BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644849|ref|NP_207019.1| nifU-like protein
[Helicobacter pylori 26695]
(326 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V ... 28 1.9
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 27 3.2
pdb|1FSP| Nmr Solution Structure Of Bacillus Subtilis Spo... 27 3.2
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosp... 27 4.2
pdb|1F51|F Chain F, A Transient Interaction Between Two Pho... 26 5.4
pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resi... 26 5.4
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 26 7.1
pdb|1BVY|F Chain F, Complex Of The Heme And Fmn-Binding Dom... 26 7.1
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 27.7 bits (60), Expect = 1.9
Identities = 21/68 (30%), Positives = 28/68 (40%), Gaps = 9/68 (13%)
Query: 30 GVITEEQAKAKNAK--LIVADYGAEACGDAVRLYWLVDE-------STDRIVDAKFKSFG 80
G+ E +KN ++V YG E YWLV S + AK K+
Sbjct: 150 GIYFEPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNH 209
Query: 81 CGTAIASS 88
CG A A+S
Sbjct: 210 CGIATAAS 217
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 26.9 bits (58), Expect = 3.2
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 18/95 (18%)
Query: 203 GGHEKRDYYLVDILKEVREEMEAEKLKAT------ANKSQSGELAFREM--------TMV 248
G ++ D Y + LK+ +E++E + KAT A+ ++ +L E+ T +
Sbjct: 52 GTEDELDKYS-EALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATAL 110
Query: 249 QKIKAVDKVIDENIRPMLMMDG---GDLEILDIKE 280
QK++ +K DE+ R M +++ D E ++I+E
Sbjct: 111 QKLEEAEKAADESERGMKVIESRAQKDEEKMEIQE 145
>pdb|1FSP| Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein, 20
Structures
pdb|2FSP| Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
pdb|1NAT| Crystal Structure Of Spoof From Bacillus Subtilis
Length = 124
Score = 26.9 bits (58), Expect = 3.2
Identities = 23/80 (28%), Positives = 38/80 (46%), Gaps = 12/80 (15%)
Query: 209 DYYLVDILKEVREEMEAEKLKATANKSQSGELAFRE----MTMVQKIKAVD--------K 256
D Y + IL E + AN Q+ ++ +E + + KI +D K
Sbjct: 11 DQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMK 70
Query: 257 VIDENIRPMLMMDGGDLEIL 276
VIDENIR ++M G+L+++
Sbjct: 71 VIDENIRVIIMTAYGELDMI 90
>pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate
5-Phosphatase Domain (Ipp5c) Of Spsynaptojanin In
Complex With Inositol (1,4)-Bisphosphate And Calcium
Ion
pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate
5-Phosphatase Domain (Ipp5c) Of Spsynaptojanin
Length = 347
Score = 26.6 bits (57), Expect = 4.2
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 35 EQAKAKNAKLIVADYGAEACGDAVRL-YWLVDEST 68
E ++ KN K+ VA Y C +L WL E+T
Sbjct: 18 EFSEHKNVKIFVASYNLNGCSATTKLENWLFPENT 52
>pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 26.2 bits (56), Expect = 5.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 256 KVIDENIRPMLMMDGGDLEIL 276
KVIDENIR ++M G+L+++
Sbjct: 68 KVIDENIRVIIMTAYGELDMI 88
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
Length = 124
Score = 26.2 bits (56), Expect = 5.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 256 KVIDENIRPMLMMDGGDLEIL 276
KVIDENIR ++M G+L+++
Sbjct: 70 KVIDENIRVIIMTAYGELDMI 90
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 25.8 bits (55), Expect = 7.1
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 17/84 (20%)
Query: 214 DILKEVREEMEAEKLKATANKSQSGEL-----AFRE---------MTMVQKIKAVDKVID 259
+ LK+ +E++E + KAT ++ L F E T +QK++ +K D
Sbjct: 62 EALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAAD 121
Query: 260 ENIRPMLMMDG---GDLEILDIKE 280
E+ R M +++ D E ++I+E
Sbjct: 122 ESERGMKVIESRAQKDEEKMEIQE 145
>pdb|1BVY|F Chain F, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
Length = 191
Score = 25.8 bits (55), Expect = 7.1
Identities = 15/57 (26%), Positives = 24/57 (41%), Gaps = 5/57 (8%)
Query: 27 THLGVITEEQAKAKNAKLIVADYGAEACGDAVRLY-WLVDESTDRIVDAKFKSFGCG 82
+H G + E A ++ A Y +A + WL S D + ++ FGCG
Sbjct: 60 SHAGNLPREGA----VLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCG 112
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,833,538
Number of Sequences: 13198
Number of extensions: 72245
Number of successful extensions: 192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 8
length of query: 326
length of database: 2,899,336
effective HSP length: 88
effective length of query: 238
effective length of database: 1,737,912
effective search space: 413623056
effective search space used: 413623056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)