BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644850|ref|NP_207020.1| hypothetical protein
[Helicobacter pylori 26695]
         (73 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1E7K|A  Chain A, Crystal Structure Of The Spliceosomal 1...    26  0.71
pdb|1EKJ|G  Chain G, The X-Ray Crystallographic Structure Of...    23  6.0

>pdb|1E7K|A Chain A, Crystal Structure Of The Spliceosomal 15.5kd Protein
          Bound To A U4 Snrna Fragment
 pdb|1E7K|B Chain B, Crystal Structure Of The Spliceosomal 15.5kd Protein
          Bound To A U4 Snrna Fragment
          Length = 128

 Score = 26.2 bits (56), Expect = 0.71
 Identities = 14/46 (30%), Positives = 24/46 (51%)

Query: 23 PKADANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSYIKRYILKA 68
          P ADA+   + + L      Y++L K ANE  +++   I  +I+ A
Sbjct: 12 PLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMA 57



>pdb|1EKJ|G Chain G, The X-Ray Crystallographic Structure Of Beta Carbonic
          Anhydrase From The C3 Dicot Pisum Sativum
 pdb|1EKJ|C Chain C, The X-Ray Crystallographic Structure Of Beta Carbonic
          Anhydrase From The C3 Dicot Pisum Sativum
 pdb|1EKJ|F Chain F, The X-Ray Crystallographic Structure Of Beta Carbonic
          Anhydrase From The C3 Dicot Pisum Sativum
 pdb|1EKJ|B Chain B, The X-Ray Crystallographic Structure Of Beta Carbonic
          Anhydrase From The C3 Dicot Pisum Sativum
 pdb|1EKJ|E Chain E, The X-Ray Crystallographic Structure Of Beta Carbonic
          Anhydrase From The C3 Dicot Pisum Sativum
 pdb|1EKJ|D Chain D, The X-Ray Crystallographic Structure Of Beta Carbonic
          Anhydrase From The C3 Dicot Pisum Sativum
 pdb|1EKJ|H Chain H, The X-Ray Crystallographic Structure Of Beta Carbonic
          Anhydrase From The C3 Dicot Pisum Sativum
 pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic
          Anhydrase From The C3 Dicot Pisum Sativum
          Length = 221

 Score = 23.1 bits (48), Expect = 6.0
 Identities = 8/23 (34%), Positives = 16/23 (68%)

Query: 23 PKADANKKTRAVSLYFSDEQYQK 45
          PK++A+++ +   L+F  E+Y K
Sbjct: 9  PKSEASERIKTGFLHFKKEKYDK 31



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.306    0.125    0.320 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,418
Number of Sequences: 13198
Number of extensions: 11003
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 2
length of query: 73
length of database: 2,899,336
effective HSP length: 49
effective length of query: 24
effective length of database: 2,252,634
effective search space: 54063216
effective search space used: 54063216
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 47 (22.7 bits)