BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644655|ref|NP_206824.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(521 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G91|A Chain A, Solution Structure Of Myeloid Progenito... 32 0.17
pdb|1L1L|A Chain A, Crystal Structure Of B-12 Dependent (Cl... 27 7.3
pdb|1LLW|A Chain A, Structural Studies On The Synchronizati... 26 9.5
>pdb|1G91|A Chain A, Solution Structure Of Myeloid Progenitor Inhibitory
Factor- 1 (Mpif-1)
Length = 77
Score = 32.0 bits (71), Expect = 0.17
Identities = 23/61 (37%), Positives = 36/61 (58%), Gaps = 9/61 (14%)
Query: 262 FNATS---CATYTTASLEC-ILDSSFKNNAYENLP--TYLTKAGIKVFWYSANDGEKNVK 315
F+ATS C +YT S+ C +L+S F+ N+ + P +LTK G + + AN +K V+
Sbjct: 4 FHATSADCCISYTPRSIPCSLLESYFETNSECSKPGVIFLTKKGRR---FCANPSDKQVQ 60
Query: 316 V 316
V
Sbjct: 61 V 61
>pdb|1L1L|A Chain A, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|B Chain B, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|C Chain C, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|D Chain D, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
Length = 739
Score = 26.6 bits (57), Expect = 7.3
Identities = 25/77 (32%), Positives = 38/77 (48%), Gaps = 13/77 (16%)
Query: 311 EKNVKVTSYLKNYELIQKCPNCEAIAPYDESLLYNLPDLLKEHSNENVLLI-LHLAGSHG 369
+ +VKV + KN EL+Q +S+ Y LPD + N LLI LH A ++
Sbjct: 196 DASVKVGAVGKN-ELVQDA----------DSIYYRLPDTREGWVLANALLIDLHFAQTN- 243
Query: 370 PNYDNKVPLNFRVFKPY 386
P+ K+ L+ +PY
Sbjct: 244 PDRKQKLILDLSDIRPY 260
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
Length = 1520
Score = 26.2 bits (56), Expect = 9.5
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 403 AYDNTIFYNDYLLDKIISMLE-----NAKQPALMIYLSDHGESLGEEAFYLHGIPKSIAP 457
AYD+ Y YL D+ ++ L NA QPA+ + + ES+ + F G+
Sbjct: 823 AYDHYELYRQYLKDRPVTALRDLLDFNADQPAISLEEVESVESI-VKRFCTGGMSLGALS 881
Query: 458 KEQYE 462
+E +E
Sbjct: 882 REAHE 886
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.139 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,941,427
Number of Sequences: 13198
Number of extensions: 118580
Number of successful extensions: 245
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 3
length of query: 521
length of database: 2,899,336
effective HSP length: 92
effective length of query: 429
effective length of database: 1,685,120
effective search space: 722916480
effective search space used: 722916480
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)