BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644858|ref|NP_207028.1|
CTP:CMP-3-deoxy-D-manno-octulosonate-cytidylyl-transferase (kdsB)
[Helicobacter pylori 26695]
(243 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1H7E|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Man... 127 2e-30
pdb|1K0S|A Chain A, Solution Structure Of The Chemotaxis Pr... 27 2.1
pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis... 26 3.6
pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1 26 4.8
pdb|1KZG|A Chain A, Dbscdc42(Y889f) >gi|20151150|pdb|1KZG|C... 25 8.1
pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Plecks... 25 8.1
>pdb|1H7E|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7F|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7G|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7H|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7T|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1GQC|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
pdb|1H7E|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7F|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7G|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7H|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7T|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1GQC|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
pdb|1GQ9|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1GQ9|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1H6J|A Chain A, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
pdb|1H6J|B Chain B, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
Length = 245
Score = 127 bits (318), Expect = 2e-30
Identities = 86/247 (34%), Positives = 130/247 (51%), Gaps = 12/247 (4%)
Query: 1 MIIIPARLKSSRFENKVLEDIFGLPMVVRCAKNANLVD---ECVVACDDESIMQTCQKFH 57
+I+IPAR SSR K L DI G PM+ + A V E VA DD + Q Q F
Sbjct: 4 VIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFG 63
Query: 58 IKAVLTSKHHNSGTERCLEAARILGLKNDERVLNLQGDEPFLEKEVILALLEATKNAPFM 117
KA++T H SGT+R +E ++ + +NLQGDEP + + LL+ ++ P +
Sbjct: 64 GKAIMTRNDHESGTDRLVE---VMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPAL 120
Query: 118 --ATCAKVIDEEQAKSPNLVKVVLDSQNNALYFSRSLIPFLRDFDAKRQTPLLGHIGIYG 175
AT I +A P+ VKVV++++ +ALYFSRS IP+ R+ + R L H+GIY
Sbjct: 121 PVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAEKAR---YLKHVGIYA 177
Query: 176 FHNKEILEELCALKPCVLEEIEKLEQLRALYYQKKIAVKIVQSESVGIDTQEDLQNALKI 235
+ +++L+ L + E+ E LEQLR + I V + G+DT L+ +
Sbjct: 178 Y-RRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRAL 236
Query: 236 FSPDLLE 242
+ +L E
Sbjct: 237 MAQELAE 243
>pdb|1K0S|A Chain A, Solution Structure Of The Chemotaxis Protein Chew From The
Thermophilic Organism Thermotoga Maritima
Length = 151
Score = 26.9 bits (58), Expect = 2.1
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 16/113 (14%)
Query: 37 VDECVVACDDESIMQTCQKFHIKAVLTSKHHNSGTER-------CLEAARILGLKNDER- 88
+DE +A D ++I +K I V S+H G + A+ILG+ DE+
Sbjct: 18 IDEQALAFDVDNIEMVIEKSDITPVPKSRHFVEGVINLRGRIIPVVNLAKILGISFDEQK 77
Query: 89 -----VLNLQGDEPFLEKEVILALLEATKNAPFMATCAKVIDEEQAKSPNLVK 136
V + E + +L +L T+N V D+ KS LVK
Sbjct: 78 MKSIIVARTKDVEVGFLVDRVLGVLRITEN---QLDLTNVSDKFGKKSKGLVK 127
>pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B. Data Collected Under Cryogenic
Conditions.
pdb|1EP1|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B
pdb|1EP2|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B Complexed With Orotate
Length = 311
Score = 26.2 bits (56), Expect = 3.6
Identities = 21/85 (24%), Positives = 37/85 (42%), Gaps = 8/85 (9%)
Query: 58 IKAVLTSKHHNSGTERCLEAA----RILGLKNDERVLNLQGDEPFLEKEV----ILALLE 109
+KA + T R E A +GL+N + + P+L + I+A +
Sbjct: 47 VKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIMTEKLPWLNENFPELPIIANVA 106
Query: 110 ATKNAPFMATCAKVIDEEQAKSPNL 134
++ A ++A CAK+ D K+ L
Sbjct: 107 GSEEADYVAVCAKIGDAANVKAIEL 131
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1
Length = 439
Score = 25.8 bits (55), Expect = 4.8
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 125 DEEQAKSPNLVKVVLDSQNNALYFSRSLI 153
++++ SPNL+K++ + N L+F + ++
Sbjct: 207 EDKEINSPNLLKMIRHTTNLTLWFEKCIV 235
>pdb|1KZG|A Chain A, Dbscdc42(Y889f)
pdb|1KZG|C Chain C, Dbscdc42(Y889f)
Length = 353
Score = 25.0 bits (53), Expect = 8.1
Identities = 24/87 (27%), Positives = 34/87 (38%), Gaps = 25/87 (28%)
Query: 148 FSRSLIPFLRDFDAKRQTPLLGHI-----------------GIYGFHNKEILEEL--CAL 188
+ L+ L + A+ PL+ H+ IY FHN+ L EL C
Sbjct: 26 YVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELESCID 85
Query: 189 KP-----CVLEEIEKLEQLRALYYQKK 210
P C LE +E+ Q+ Y Q K
Sbjct: 86 CPELVGRCFLERMEEF-QIYEKYCQNK 111
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|C Chain C, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|E Chain E, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|G Chain G, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 353
Score = 25.0 bits (53), Expect = 8.1
Identities = 24/87 (27%), Positives = 34/87 (38%), Gaps = 25/87 (28%)
Query: 148 FSRSLIPFLRDFDAKRQTPLLGHI-----------------GIYGFHNKEILEEL--CAL 188
+ L+ L + A+ PL+ H+ IY FHN+ L EL C
Sbjct: 26 YVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELESCID 85
Query: 189 KP-----CVLEEIEKLEQLRALYYQKK 210
P C LE +E+ Q+ Y Q K
Sbjct: 86 CPELVGRCFLERMEEF-QIYEKYCQNK 111
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.137 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,269,081
Number of Sequences: 13198
Number of extensions: 47154
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 6
length of query: 243
length of database: 2,899,336
effective HSP length: 86
effective length of query: 157
effective length of database: 1,764,308
effective search space: 276996356
effective search space used: 276996356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)