BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644859|ref|NP_207029.1| hypothetical protein
[Helicobacter pylori 26695]
         (265 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1EKR|A  Chain A, Moac Protein From E. Coli                     26  5.4
pdb|1EKS|A  Chain A, Asp128ala Variant Of Moac Protein From ...    26  5.4
pdb|1JI4|A  Chain A, Nap Protein From Helicobacter Pylori >g...    25  9.1

>pdb|1EKR|A Chain A, Moac Protein From E. Coli
          Length = 161

 Score = 25.8 bits (55), Expect = 5.4
 Identities = 11/41 (26%), Positives = 22/41 (52%)

Query: 213 DKISILEKIYSTQYDINAQKEPEDLRTKVENTTKKIFESGV 253
           D I +   +  ++ ++N Q EPE  R ++E   +   ++GV
Sbjct: 71  DLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGV 111



>pdb|1EKS|A Chain A, Asp128ala Variant Of Moac Protein From E. Coli
          Length = 161

 Score = 25.8 bits (55), Expect = 5.4
 Identities = 11/41 (26%), Positives = 22/41 (52%)

Query: 213 DKISILEKIYSTQYDINAQKEPEDLRTKVENTTKKIFESGV 253
           D I +   +  ++ ++N Q EPE  R ++E   +   ++GV
Sbjct: 71  DLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGV 111



>pdb|1JI4|A Chain A, Nap Protein From Helicobacter Pylori
 pdb|1JI4|B Chain B, Nap Protein From Helicobacter Pylori
 pdb|1JI4|C Chain C, Nap Protein From Helicobacter Pylori
 pdb|1JI4|D Chain D, Nap Protein From Helicobacter Pylori
 pdb|1JI4|E Chain E, Nap Protein From Helicobacter Pylori
 pdb|1JI4|F Chain F, Nap Protein From Helicobacter Pylori
 pdb|1JI4|G Chain G, Nap Protein From Helicobacter Pylori
 pdb|1JI4|H Chain H, Nap Protein From Helicobacter Pylori
 pdb|1JI4|I Chain I, Nap Protein From Helicobacter Pylori
 pdb|1JI4|J Chain J, Nap Protein From Helicobacter Pylori
 pdb|1JI4|K Chain K, Nap Protein From Helicobacter Pylori
 pdb|1JI4|L Chain L, Nap Protein From Helicobacter Pylori
          Length = 144

 Score = 25.0 bits (53), Expect = 9.1
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 127 IFNEIPADYAI------ELPSTNAANKDKILYIVSDPMCPHCQKELTKLRDHL 173
           IF EI  DY        EL +T     DK+    +D      QK +  L+ HL
Sbjct: 91  IFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAHL 143



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.314    0.131    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,302,023
Number of Sequences: 13198
Number of extensions: 47201
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 3
length of query: 265
length of database: 2,899,336
effective HSP length: 87
effective length of query: 178
effective length of database: 1,751,110
effective search space: 311697580
effective search space used: 311697580
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)