BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644861|ref|NP_207031.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(390 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1AKE|A Chain A, Adenylate Kinase (E.C.2.7.4.3) Complex ... 28 1.8
pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapol... 28 1.8
pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E.... 28 1.8
pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. ... 28 1.8
pdb|1ID5|I Chain I, Crystal Structure Of Bovine Thrombin Co... 28 2.3
pdb|1QEX|A Chain A, Bacteriophage T4 Gene Product 9 (Gp9), ... 27 3.0
pdb|1ECY| Protease Inhibitor Ecotin >gi|1942366|pdb|1ECZ|... 27 4.0
pdb|1IFG|A Chain A, Crystal Structure Of A Monomeric Form O... 27 4.0
pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 1... 27 4.0
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant... 26 6.8
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli ... 26 6.8
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Betwee... 26 6.8
pdb|1SLX|A Chain A, Rat Anionic N143h, E151h Trypsin Comple... 26 8.8
>pdb|1AKE|A Chain A, Adenylate Kinase (E.C.2.7.4.3) Complex With The Inhibitor
Ap5a
pdb|1AKE|B Chain B, Adenylate Kinase (E.C.2.7.4.3) Complex With The Inhibitor
Ap5a
pdb|1ANK|A Chain A, Adenylate Kinase (Adk) (E.C.2.7.4.3)
pdb|1ANK|B Chain B, Adenylate Kinase (Adk) (E.C.2.7.4.3)
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
Length = 214
Score = 28.1 bits (61), Expect = 1.8
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 12 KTLEEIGLDWHTNDDMSSYIADEMVVVSQKEADAYYDACNE-LYDMFVETAEEA------ 64
K+ E+G D + DE+V+ KE A D N L D F T +A
Sbjct: 40 KSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA 99
Query: 65 -IQNDRFFELDIPNALI 80
I D E D+P+ LI
Sbjct: 100 GINVDYVLEFDVPDELI 116
>pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapolitana
pdb|1A0E|D Chain D, Xylose Isomerase From Thermotoga Neapolitana
Length = 443
Score = 28.1 bits (61), Expect = 1.8
Identities = 25/93 (26%), Positives = 44/93 (46%), Gaps = 11/93 (11%)
Query: 54 YDMFVETAEEAIQN---DRFFELDIPNALIPMIKQSFEEEVHW-HIYGRFDLAGGLDGKP 109
YD V TA +++ D +F+ +I + +F+ E+ I G+ G +D
Sbjct: 242 YDFDVATAYAFLKSHGLDEYFKFNIEANHATLAGHTFQHELRMARILGKL---GSIDANQ 298
Query: 110 IKLLEFNADT---PTMLYETAVIQWALLKANGY 139
LL DT PT +Y+T + + ++KA G+
Sbjct: 299 GDLL-LGWDTDQFPTNVYDTTLAMYEVIKAGGF 330
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 28.1 bits (61), Expect = 1.8
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 12 KTLEEIGLDWHTNDDMSSYIADEMVVVSQKEADAYYDACNE-LYDMFVETAEEA------ 64
K+ E+G D + DE+V+ KE A D N L D F T +A
Sbjct: 40 KSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA 99
Query: 65 -IQNDRFFELDIPNALI 80
I D E D+P+ LI
Sbjct: 100 GINVDYVLEFDVPDELI 116
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 28.1 bits (61), Expect = 1.8
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 12 KTLEEIGLDWHTNDDMSSYIADEMVVVSQKEADAYYDACNE-LYDMFVETAEEA------ 64
K+ E+G D + DE+V+ KE A D N L D F T +A
Sbjct: 40 KSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA 99
Query: 65 -IQNDRFFELDIPNALI 80
I D E D+P+ LI
Sbjct: 100 GINVDYVLEFDVPDELI 116
>pdb|1ID5|I Chain I, Crystal Structure Of Bovine Thrombin Complex With
Protease Inhibitor Ecotin
Length = 142
Score = 27.7 bits (60), Expect = 2.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 9 LDNKTLEEIGLDWHTNDDMSSYIADEMVVVSQKEADAYYDA 49
L+NKTLE G D++ D +SS ++ M K+ + A
Sbjct: 59 LENKTLEGWGYDYYVFDKVSSPVSTRMACPDGKKEKKFVTA 99
>pdb|1QEX|A Chain A, Bacteriophage T4 Gene Product 9 (Gp9), The Trigger Of Tail
Contraction And The Long Tail Fibers Connector
pdb|1QEX|B Chain B, Bacteriophage T4 Gene Product 9 (Gp9), The Trigger Of Tail
Contraction And The Long Tail Fibers Connector
Length = 288
Score = 27.3 bits (59), Expect = 3.0
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 105 LDGKPIKLLEFNADTPTMLYETAVIQWALLKANGYDENKQFNNLYEALGENF 156
+DG+ IK E N T+ E ++A+++ E + N+ ++ EN+
Sbjct: 209 VDGRKIKTAEINILVDTVNSEVISSEYAVMRVGNETEEDEIANIAFSIKENY 260
>pdb|1ECY| Protease Inhibitor Ecotin
pdb|1ECZ|A Chain A, Protease Inhibitor Ecotin
pdb|1ECZ|B Chain B, Protease Inhibitor Ecotin
pdb|1AZZ|C Chain C, Fiddler Crab Collagenase Complexed To Ecotin
pdb|1AZZ|D Chain D, Fiddler Crab Collagenase Complexed To Ecotin
Length = 142
Score = 26.9 bits (58), Expect = 4.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 9 LDNKTLEEIGLDWHTNDDMSSYIADEMVVVSQKEADAYYDA 49
L+NKTLE G D++ D +SS ++ M K+ + A
Sbjct: 59 LENKTLEGWGYDYYVFDKVSSPVSTMMACPDGKKEKKFVTA 99
>pdb|1IFG|A Chain A, Crystal Structure Of A Monomeric Form Of General
Protease Inhibitor, Ecotin In Absence Of A Protease
Length = 140
Score = 26.9 bits (58), Expect = 4.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 9 LDNKTLEEIGLDWHTNDDMSSYIADEMVVVSQKEADAYYDA 49
L+NKTLE G D++ D +SS ++ M K+ + A
Sbjct: 54 LENKTLEGWGYDYYVFDKVSSPVSTMMACPDGKKEKKFVTA 94
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With
13(S)-Hydroperoxy-9(Z) ,11(E)-Octadecadienoic Acid
pdb|1BYT| Lipoxygenase-3 (Soybean) Complex With 4-Nitrocatechol
pdb|1LNH| Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 26.9 bits (58), Expect = 4.0
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 39 SQKEADAYYDACNELYDMFVE------TAEEAIQNDRFFELDIPNALIPMIKQ 85
S+ ++ Y D +++ +E T +EAIQN R F LD + ++P +++
Sbjct: 387 SKLDSQVYGDHTSQITKEHLEPNLEGLTVDEAIQNKRLFLLDHHDPIMPYLRR 439
>pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 26.2 bits (56), Expect = 6.8
Identities = 18/70 (25%), Positives = 34/70 (47%), Gaps = 8/70 (11%)
Query: 67 NDRFFE-LDIPNALIPMIKQSFEEEVHWHIYGRFDLAGGLDGKPIKLLEFNADTPTMLYE 125
+D+ E LDIP ++P +++S E +YG+ ++ GG G I + D L+
Sbjct: 200 DDKMLEVLDIPREMLPEVRRSSE------VYGQTNI-GGKGGTRIPISGIAGDQQAALFG 252
Query: 126 TAVIQWALLK 135
++ + K
Sbjct: 253 QLCVKEGMAK 262
>pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 26.2 bits (56), Expect = 6.8
Identities = 18/70 (25%), Positives = 34/70 (47%), Gaps = 8/70 (11%)
Query: 67 NDRFFE-LDIPNALIPMIKQSFEEEVHWHIYGRFDLAGGLDGKPIKLLEFNADTPTMLYE 125
+D+ E LDIP ++P +++S E +YG+ ++ GG G I + D L+
Sbjct: 200 DDKMLEVLDIPREMLPEVRRSSE------VYGQTNI-GGKGGTRIPISGIAGDQQAALFG 252
Query: 126 TAVIQWALLK 135
++ + K
Sbjct: 253 QLCVKEGMAK 262
>pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6- Bisphosphate.
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6- Bisphosphate.
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6- Bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6- Bisphosphate.
pdb|1GLB|G Chain G, Glycerol Kinase (E.C.2.7.1.30) Complex With Glycerol, Adp,
And The (Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc)
pdb|1GLA|G Chain G, Glycerol Kinase (E.C.2.7.1.30) Complex With Glycerol And
The (Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc)
pdb|1GLC|G Chain G, Glycerol Kinase (E.C.2.7.1.30) Complexed With The
(Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc), Glycerol-3-Phosphate, Adenosine Diphosphate,
Mg(Ii) And Zn(Ii)
pdb|1GLD|G Chain G, Glycerol Kinase (E.C.2.7.1.30) Complexed With The
(Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc), Glycerol-3-Phosphate, Adenosine Diphosphate
And Mn(Ii)
pdb|1GLE|G Chain G, Glycerol Kinase (E.C.2.7.1.30) Complexed With The
(Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc), Glycerol-3-Phosphate, Adenosine Diphosphate
And Zn(Ii)
Length = 501
Score = 26.2 bits (56), Expect = 6.8
Identities = 18/70 (25%), Positives = 34/70 (47%), Gaps = 8/70 (11%)
Query: 67 NDRFFE-LDIPNALIPMIKQSFEEEVHWHIYGRFDLAGGLDGKPIKLLEFNADTPTMLYE 125
+D+ E LDIP ++P +++S E +YG+ ++ GG G I + D L+
Sbjct: 200 DDKMLEVLDIPREMLPEVRRSSE------VYGQTNI-GGKGGTRIPISGIAGDQQAALFG 252
Query: 126 TAVIQWALLK 135
++ + K
Sbjct: 253 QLCVKEGMAK 262
>pdb|1SLX|A Chain A, Rat Anionic N143h, E151h Trypsin Complexed To A86h
Ecotin; Zinc-Bound
pdb|1SLU|A Chain A, Rat Anionic N143h, E151h Trypsin Complexed To A86h
Ecotin
pdb|1SLV|A Chain A, Rat Anionic N143h, E151h Trypsin Complexed To A86h
Ecotin; Copper-Bound
pdb|1SLW|A Chain A, Rat Anionic N143h, E151h Trypsin Complexed To A86h
Ecotin; Nickel-Bound
Length = 142
Score = 25.8 bits (55), Expect = 8.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 9 LDNKTLEEIGLDWHTNDDMSSYIADEM 35
L+NKTLE G D++ D +SS ++ M
Sbjct: 59 LENKTLEGWGYDYYVFDKVSSPVSTMM 85
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,366,770
Number of Sequences: 13198
Number of extensions: 104252
Number of successful extensions: 212
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 15
length of query: 390
length of database: 2,899,336
effective HSP length: 90
effective length of query: 300
effective length of database: 1,711,516
effective search space: 513454800
effective search space used: 513454800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)