BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644869|ref|NP_207039.1| hypothetical protein
[Helicobacter pylori 26695]
(131 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2PLC| Phosphatidylinositol-Specific Phospholipase C F... 28 0.45
pdb|1AOD| Phosphatidylinositol-Specific Phospholipase C F... 28 0.45
pdb|1KIU|B Chain B, Fimh Adhesin Q133n Mutant-Fimc Chaperon... 26 1.3
pdb|1KLF|B Chain B, Fimh Adhesin-Fimc Chaperone Complex Wit... 26 1.7
pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase... 25 2.9
pdb|1I6V|C Chain C, Thermus Aquaticus Core Rna Polymerase-R... 24 5.0
pdb|1BXN|A Chain A, The Crystal Structure Of Rubisco From A... 24 5.0
pdb|1HQM|C Chain C, Crystal Structure Of Thermus Aquaticus ... 24 5.0
pdb|1L9U|C Chain C, Thermus Aquaticus Rna Polymerase Holoen... 24 5.0
pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copp... 24 6.5
pdb|1QOR|A Chain A, Quinone Oxidoreductase Complexed With N... 23 8.5
>pdb|2PLC| Phosphatidylinositol-Specific Phospholipase C From Listeria
Monocytogenes
Length = 274
Score = 27.7 bits (60), Expect = 0.45
Identities = 31/117 (26%), Positives = 48/117 (40%), Gaps = 11/117 (9%)
Query: 21 DYGIDKTLELKKDEVFKAIIKDTSN------EQTKEITLYWTLYANKGLVINMRFNHFPY 74
DY I + + KD + DTSN + +I L + K LVIN R F
Sbjct: 116 DYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSR--KFGM 173
Query: 75 QFILYTDHARNTYNLKVFEEKFSSNSTLSLVFKDFKED-KAALRLLALMPLVFSPKE 130
QF ++ YN + KF + ++ K D K L ++ L F+P++
Sbjct: 174 QFGAPNQVIQDDYNGPSVKTKF--KEIVQTAYQASKADNKLFLNHISATSLTFTPRQ 228
>pdb|1AOD| Phosphatidylinositol-Specific Phospholipase C From Listeria
Monocytogenes
Length = 289
Score = 27.7 bits (60), Expect = 0.45
Identities = 31/117 (26%), Positives = 48/117 (40%), Gaps = 11/117 (9%)
Query: 21 DYGIDKTLELKKDEVFKAIIKDTSN------EQTKEITLYWTLYANKGLVINMRFNHFPY 74
DY I + + KD + DTSN + +I L + K LVIN R F
Sbjct: 130 DYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSR--KFGM 187
Query: 75 QFILYTDHARNTYNLKVFEEKFSSNSTLSLVFKDFKED-KAALRLLALMPLVFSPKE 130
QF ++ YN + KF + ++ K D K L ++ L F+P++
Sbjct: 188 QFGAPNQVIQDDYNGPSVKTKF--KEIVQTAYQASKADNKLFLNHISATSLTFTPRQ 242
>pdb|1KIU|B Chain B, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|D Chain D, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|F Chain F, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|H Chain H, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|J Chain J, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|L Chain L, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|N Chain N, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|P Chain P, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
Length = 279
Score = 26.2 bits (56), Expect = 1.3
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 39 IIKDTSNEQTKEITLYWTLYANKGLVI 65
I+++T+N + + W +YAN +V+
Sbjct: 130 ILRNTNNYNSDDFQFVWNIYANNDVVV 156
>pdb|1KLF|B Chain B, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|D Chain D, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|F Chain F, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|H Chain H, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|J Chain J, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|L Chain L, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|N Chain N, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|P Chain P, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1QUN|B Chain B, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|D Chain D, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|F Chain F, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|H Chain H, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|J Chain J, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|L Chain L, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|N Chain N, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|P Chain P, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
Length = 279
Score = 25.8 bits (55), Expect = 1.7
Identities = 8/27 (29%), Positives = 16/27 (58%)
Query: 39 IIKDTSNEQTKEITLYWTLYANKGLVI 65
I++ T+N + + W +YAN +V+
Sbjct: 130 ILRQTNNYNSDDFQFVWNIYANNDVVV 156
>pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|M Chain M, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1119
Score = 25.0 bits (53), Expect = 2.9
Identities = 13/42 (30%), Positives = 26/42 (60%), Gaps = 6/42 (14%)
Query: 6 RYGLIFLFFLKAFGLDYGIDKTLELKKDEV------FKAIIK 41
R+G + ++ L+A+G + + + L LK D++ ++AIIK
Sbjct: 1031 RFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIK 1072
>pdb|1I6V|C Chain C, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 1118
Score = 24.3 bits (51), Expect = 5.0
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 6 RYGLIFLFFLKAFGLDYGIDKTLELKKDEV------FKAIIK 41
R+G + ++ L+A+G + + + L +K D++ ++AIIK
Sbjct: 1030 RFGEMEVWALEAYGAAHTLQEMLTIKSDDIEGRNAAYQAIIK 1071
>pdb|1BXN|A Chain A, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms.
pdb|1BXN|C Chain C, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms.
pdb|1BXN|E Chain E, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms.
pdb|1BXN|G Chain G, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms
Length = 485
Score = 24.3 bits (51), Expect = 5.0
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 73 PYQFILYTDHARNTYNLKVFEEKFSSNSTLSLVFK--DFKEDKAA 115
P QF Y Y+L +FEE +N T S++ FK KAA
Sbjct: 96 PEQFFCYV-----AYDLSLFEEGSIANLTASIIGNVFSFKPIKAA 135
>pdb|1HQM|C Chain C, Crystal Structure Of Thermus Aquaticus Core Rna Polymerase-
Includes Complete Structure With Side-Chains (Except For
Disordered Regions)-Further Refined From Original
Deposition-Contains Additional Sequence Information
Length = 1119
Score = 24.3 bits (51), Expect = 5.0
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 6 RYGLIFLFFLKAFGLDYGIDKTLELKKDEV------FKAIIK 41
R+G + ++ L+A+G + + + L +K D++ ++AIIK
Sbjct: 1031 RFGEMEVWALEAYGAAHTLQEMLTIKSDDIEGRNAAYQAIIK 1072
>pdb|1L9U|C Chain C, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|L Chain L, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|C Chain C, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 1118
Score = 24.3 bits (51), Expect = 5.0
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 6 RYGLIFLFFLKAFGLDYGIDKTLELKKDEV------FKAIIK 41
R+G + ++ L+A+G + + + L +K D++ ++AIIK
Sbjct: 1030 RFGEMEVWALEAYGAAHTLQEMLTIKSDDIEGRNAAYQAIIK 1071
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From
E. Coli Involved In Copper Homeostasis
Length = 488
Score = 23.9 bits (50), Expect = 6.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 37 KAIIKDTSNEQTKEITLYW 55
KA+ D N+ T+E TL+W
Sbjct: 56 KAVTVDIYNQLTEETTLHW 74
>pdb|1QOR|A Chain A, Quinone Oxidoreductase Complexed With Nadph
pdb|1QOR|B Chain B, Quinone Oxidoreductase Complexed With Nadph
Length = 327
Score = 23.5 bits (49), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 14 FLKAFGLDYGIDKTLELKKDEVF 36
FLK + Y + KT E+K DE F
Sbjct: 122 FLKGLTVYYLLRKTYEIKPDEQF 144
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.142 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 714,800
Number of Sequences: 13198
Number of extensions: 27519
Number of successful extensions: 77
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 11
length of query: 131
length of database: 2,899,336
effective HSP length: 78
effective length of query: 53
effective length of database: 1,869,892
effective search space: 99104276
effective search space used: 99104276
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)