BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644870|ref|NP_207040.1| hypothetical protein
[Helicobacter pylori 26695]
(94 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribonucleas... 27 0.37
pdb|1JNR|A Chain A, Structure Of Adenylylsulfate Reductase ... 26 0.62
pdb|1HS7|A Chain A, Vam3p N-Terminal Domain Solution Structure 25 1.4
pdb|1JQ5|A Chain A, Bacillus Stearothermophilus Glycerol De... 24 2.4
pdb|1LFO| Liver Fatty Acid Binding Protein - Oleate Complex 24 3.1
pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dn... 24 3.1
pdb|1LDJ|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxsk... 24 3.1
pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxsk... 24 3.1
pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate... 23 4.0
pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a ... 23 4.0
pdb|1CGY| Cyclomaltodextrin Glucanotransferase (Cgtase) (... 23 4.0
pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodext... 23 4.0
pdb|1I4W|A Chain A, The Crystal Structure Of The Transcript... 23 4.0
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 23 4.0
pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodext... 23 4.0
pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodext... 23 4.0
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans... 23 4.0
pdb|1CDG| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19)... 23 4.0
pdb|1CGX| Cyclomaltodextrin Glucanotransferase (Cgtase) (... 23 4.0
pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodext... 23 4.0
pdb|1CGV| Cyclomaltodextrin Glucanotransferase (E.C.2.4.1... 23 4.0
pdb|1CGW| Cyclomaltodextrin Glucanotransferase (Cgtase) (... 23 4.0
pdb|1A1W| Fadd Death Effector Domain, F25y Mutant, Nmr Mi... 23 5.3
pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxida... 23 5.3
pdb|1A1Z| Fadd Death Effector Domain, F25g Mutant, Nmr Mi... 23 5.3
pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxida... 23 5.3
pdb|1FTS| Signal Recognition Particle Receptor From E. Coli 23 6.9
pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermo... 23 6.9
pdb|1CB8|A Chain A, Chondroitinase Ac Lyase From Flavobacte... 23 6.9
pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprP... 23 6.9
pdb|1HM2|A Chain A, Active Site Of Chondroitinase Ac Lyase ... 23 6.9
pdb|1TFE| Dimerization Domain Of Ef-Ts From T. Thermophilus 23 6.9
pdb|1FXK|B Chain B, Crystal Structure Of Archaeal Prefoldin... 22 9.0
pdb|1J91|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase... 22 9.0
pdb|1FXK|A Chain A, Crystal Structure Of Archaeal Prefoldin... 22 9.0
pdb|1DAW|A Chain A, Crystal Structure Of A Binary Complex O... 22 9.0
>pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribonuclease H From
Hyperthermophilic Archaeon, Thermococcus Kodakaraensis
Kod1
Length = 213
Score = 26.9 bits (58), Expect = 0.37
Identities = 22/69 (31%), Positives = 36/69 (51%), Gaps = 13/69 (18%)
Query: 9 IFEGNPLDKWNDIIFHASKKLSKKELERLL-ELLALLETFIEKE---DL---------EE 55
+ + N L K ++ SKKL+ K E+L E+L +L+ ++ E D+ E
Sbjct: 24 VVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDDYVILELPPDVIGSREGTLNEF 83
Query: 56 KFESFAKAL 64
+ E+FAKAL
Sbjct: 84 EVENFAKAL 92
>pdb|1JNR|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNR|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
Length = 643
Score = 26.2 bits (56), Expect = 0.62
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 28 KLSKKELERLLELLALLETFIEK---EDLEEKFESFAKALRI 66
K ++K L+R LELLA L+ +EK DL E ++ R+
Sbjct: 537 KTNEKMLQRALELLAFLKEDLEKLAARDLHELMRAWELVHRV 578
>pdb|1HS7|A Chain A, Vam3p N-Terminal Domain Solution Structure
Length = 97
Score = 25.0 bits (53), Expect = 1.4
Identities = 15/42 (35%), Positives = 25/42 (58%)
Query: 35 ERLLELLALLETFIEKEDLEEKFESFAKALRIDEELQQKIES 76
++ EL L+ETF E+ + EK + + R +EL+ KIE+
Sbjct: 3 QKTKELSNLIETFAEQSRVLEKECTKIGSKRDSKELRYKIET 44
>pdb|1JQ5|A Chain A, Bacillus Stearothermophilus Glycerol Dehydrogenase Complex
With Nad+
pdb|1JPU|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Glycerol
Dehydrogenase
pdb|1JQA|A Chain A, Bacillus Stearothermophilus Glycerol Dehydrogenase Complex
With Glycerol
Length = 370
Score = 24.3 bits (51), Expect = 2.4
Identities = 13/42 (30%), Positives = 25/42 (58%)
Query: 25 ASKKLSKKELERLLELLALLETFIEKEDLEEKFESFAKALRI 66
A ++ S++E+ER +EL L+ + ED++ K S L++
Sbjct: 287 ALEEHSQQEIERYIELYLCLDLPVTLEDIKLKDASREDILKV 328
>pdb|1LFO| Liver Fatty Acid Binding Protein - Oleate Complex
Length = 128
Score = 23.9 bits (50), Expect = 3.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 54 EEKFESFAKALRIDEELQQK 73
+E FE F KA+ + E+L QK
Sbjct: 13 QENFEPFMKAMGLPEDLIQK 32
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 23.9 bits (50), Expect = 3.1
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 19 NDIIFHASKKLSKKELERLLELLALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRK 78
N++ +++ + + +LL+ L + +E +DLEEK ++F L +E+ E+RK
Sbjct: 27 NEVEKMLKNQVNTRRIHQLLKELD--DPLLENKDLEEKLQAF---LDYVKEIPNLPEARK 81
Query: 79 TDIVIQSMANI 89
+ +S+ I
Sbjct: 82 RYRIQKSLEMI 92
>pdb|1LDJ|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 23.9 bits (50), Expect = 3.1
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 19 NDIIFHASKKLSKKELERLLELLALLETFIEKEDLEEKFESFAKAL 64
+ ++ +SK + ELE L + ++ +IE +D+ +KF +AK L
Sbjct: 411 DSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKF--YAKML 454
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 366
Score = 23.9 bits (50), Expect = 3.1
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 19 NDIIFHASKKLSKKELERLLELLALLETFIEKEDLEEKFESFAKAL 64
+ ++ +SK + ELE L + ++ +IE +D+ +KF +AK L
Sbjct: 17 DSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKF--YAKML 60
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 23.5 bits (49), Expect = 4.0
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 46 TFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANILSG 92
TFI+ D+E S A ++++ L + SR + +SG
Sbjct: 322 TFIDNHDMERFHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSG 368
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 23.5 bits (49), Expect = 4.0
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 46 TFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANILSG 92
TFI+ D+E S A ++++ L + SR + +SG
Sbjct: 322 TFIDNHDMERFHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSG 368
>pdb|1CGY| Cyclomaltodextrin Glucanotransferase (Cgtase) (E.C.2.4.1.19)
Mutant With Tyr 195 Replaced By Trp (Y195w)
Length = 686
Score = 23.5 bits (49), Expect = 4.0
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 46 TFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANILSG 92
TFI+ D+E S A ++++ L + SR + +SG
Sbjct: 322 TFIDNHDMERFHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSG 368
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 23.5 bits (49), Expect = 4.0
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 46 TFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANILSG 92
TFI+ D+E S A ++++ L + SR + +SG
Sbjct: 322 TFIDNHDMERFHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSG 368
>pdb|1I4W|A Chain A, The Crystal Structure Of The Transcription Factor Sc-Mttfb
Offers Intriguing Insights Into Mitochondrial
Transcription
Length = 353
Score = 23.5 bits (49), Expect = 4.0
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 3 DYSELEIFEGNPLDKWNDIIFHASK 27
D +EL+ F+ +++W+ I+F A++
Sbjct: 221 DANELKGFDSQCIEEWDPILFSAAE 245
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 23.5 bits (49), Expect = 4.0
Identities = 15/57 (26%), Positives = 28/57 (48%), Gaps = 5/57 (8%)
Query: 27 KKLSKKELERLLELLALLETF-----IEKEDLEEKFESFAKALRIDEELQQKIESRK 78
K L +++L+ EL A E +K++LEE + +EE Q++++ K
Sbjct: 894 KNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEK 950
Score = 23.1 bits (48), Expect = 5.3
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 38 LELLALLETFIE--KEDLEEKFESFAKALRIDEELQQKIESRKTDI 81
L+ + LE+ I +EDLE + + KA + +L +++E+ KT++
Sbjct: 1115 LKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 23.5 bits (49), Expect = 4.0
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 46 TFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANILSG 92
TFI+ D+E S A ++++ L + SR + +SG
Sbjct: 322 TFIDNHDMERFHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSG 368
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 23.5 bits (49), Expect = 4.0
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 46 TFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANILSG 92
TFI+ D+E S A ++++ L + SR + +SG
Sbjct: 322 TFIDNHDMERFHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSG 368
>pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1CXF| Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM Bacillus
Circulans Strain 251 With Maltotetraose At 120 K And Ph
9.1 Obtained After Soaking The Crystal With
Alpha-Cyclodextrin
Length = 686
Score = 23.5 bits (49), Expect = 4.0
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 46 TFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANILSG 92
TFI+ D+E S A ++++ L + SR + +SG
Sbjct: 322 TFIDNHDMERFHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSG 368
>pdb|1CDG| Cyclodextrin Glycosyltransferase (E.C.2.4.1.19) (Cgtase)
pdb|1CXE| Complex Of Cgtase With Maltotetraose At Room Temperature And Ph
9.1 Based On Diffraction Data Of A Crystal Soaked With
Alpha-Cyclodextrin
pdb|1CXI| Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120 K And
Ph 7.55
pdb|1CXH| Complex Of Cgtase With Maltotetraose At Room Temperature And Ph
9.6 Based On Diffraction Data Of A Crystal Soaked With
Maltoheptaose
pdb|2CXG| Cyclodextrin Glycosyltransferase Complexed To The Inhibitor
Acarbose
Length = 686
Score = 23.5 bits (49), Expect = 4.0
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 46 TFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANILSG 92
TFI+ D+E S A ++++ L + SR + +SG
Sbjct: 322 TFIDNHDMERFHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSG 368
>pdb|1CGX| Cyclomaltodextrin Glucanotransferase (Cgtase) (E.C.2.4.1.19)
Mutant With Tyr 195 Replaced By Leu (Y195l)
Length = 686
Score = 23.5 bits (49), Expect = 4.0
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 46 TFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANILSG 92
TFI+ D+E S A ++++ L + SR + +SG
Sbjct: 322 TFIDNHDMERFHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSG 368
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 23.5 bits (49), Expect = 4.0
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 46 TFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANILSG 92
TFI+ D+E S A ++++ L + SR + +SG
Sbjct: 322 TFIDNHDMERFHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSG 368
>pdb|1CGV| Cyclomaltodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Mutant With Tyr 195 Replaced By Phe (Y195f)
pdb|2DIJ| Complex Of A Y195f Mutant Cgtase From B. Circulans Strain 251
Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 23.5 bits (49), Expect = 4.0
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 46 TFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANILSG 92
TFI+ D+E S A ++++ L + SR + +SG
Sbjct: 322 TFIDNHDMERFHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSG 368
>pdb|1CGW| Cyclomaltodextrin Glucanotransferase (Cgtase) (E.C.2.4.1.19)
Mutant With Tyr 195 Replaced By Gly (Y195g)
Length = 686
Score = 23.5 bits (49), Expect = 4.0
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 46 TFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANILSG 92
TFI+ D+E S A ++++ L + SR + +SG
Sbjct: 322 TFIDNHDMERFHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSG 368
>pdb|1A1W| Fadd Death Effector Domain, F25y Mutant, Nmr Minimized Average
Structure
Length = 91
Score = 23.1 bits (48), Expect = 5.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 28 KLSKKELERLLELLALLETFIEKEDLE 54
++ K++LER+ L L +E+ DLE
Sbjct: 30 RVGKRKLERVQSGLDLFSMLLEQNDLE 56
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1IVU|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1AVK| Crystal Structures Of The Copper-Containing Amine Oxidase From
Arthrobacter Globiformis In The Holo- And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 23.1 bits (48), Expect = 5.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 53 LEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANILSG 92
LEE+FE + L DE + + +R D+ +A + +G
Sbjct: 101 LEEEFEVVEQLLATDERWLKALAARNLDVSKVRVAPLSAG 140
>pdb|1A1Z| Fadd Death Effector Domain, F25g Mutant, Nmr Minimized Average
Structure
Length = 91
Score = 23.1 bits (48), Expect = 5.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 28 KLSKKELERLLELLALLETFIEKEDLE 54
++ K++LER+ L L +E+ DLE
Sbjct: 30 RVGKRKLERVQSGLDLFSMLLEQNDLE 56
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVV|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVW|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVW|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVX|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IVX|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1AV4| Crystal Structures Of The Copper-Containing Amine Oxidase From
Arthrobacter Globiformis In The Holo- And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|1AVL| Crystal Structures Of The Copper-Containing Amine Oxidase From
Arthrobacter Globiformis In The Holo- And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 23.1 bits (48), Expect = 5.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 53 LEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANILSG 92
LEE+FE + L DE + + +R D+ +A + +G
Sbjct: 101 LEEEFEVVEQLLATDERWLKALAARNLDVSKVRVAPLSAG 140
>pdb|1FTS| Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 22.7 bits (47), Expect = 6.9
Identities = 14/52 (26%), Positives = 31/52 (58%), Gaps = 5/52 (9%)
Query: 42 ALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRK--TDIVIQSMANILS 91
+LL+T KE+L F S + +ID++L +++E + D+ +++ I++
Sbjct: 2 SLLKT---KENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIT 50
>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|G Chain G, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|H Chain H, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|D Chain D, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 196
Score = 22.7 bits (47), Expect = 6.9
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 26 SKKLSKKELERLLELLALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQ 84
++K+++ L++ LE + LLE K+D +++ E +QQ I +IV++
Sbjct: 139 AEKIAEGRLKKYLEEVVLLEQPFVKDD----------KVKVKELIQQAIAKIGENIVVR 187
>pdb|1CB8|A Chain A, Chondroitinase Ac Lyase From Flavobacterium Heparinum
Length = 678
Score = 22.7 bits (47), Expect = 6.9
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 14 PLDKWNDIIFHASKKLSKKELERLLELLALLETFIEKEDL----EEKFESFAKALR 65
P W D+ + + LL+L +++ +IEK+ ++ F+ +KA +
Sbjct: 37 PDGSWKDVPYKDDAMTNWLPNNHLLQLETIIQAYIEKDSHYYGDDKVFDQISKAFK 92
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
Thermotoga Maritima
Length = 225
Score = 22.7 bits (47), Expect = 6.9
Identities = 16/48 (33%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Query: 15 LDKWNDIIFHASKK--LSKKELERLLELLALLETFIEKEDLEEKFESF 60
LD + SK+ L+KKE + L L+ + KE+L+E SF
Sbjct: 136 LDTATKKAYRGSKEIDLTKKEYQILEYLVXNKNRVVTKEELQEHLWSF 183
>pdb|1HM2|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HMU|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HM3|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HMW|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
Length = 700
Score = 22.7 bits (47), Expect = 6.9
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 14 PLDKWNDIIFHASKKLSKKELERLLELLALLETFIEKEDL----EEKFESFAKALR 65
P W D+ + + LL+L +++ +IEK+ ++ F+ +KA +
Sbjct: 59 PDGSWKDVPYKDDAMTNWLPNNHLLQLETIIQAYIEKDSHYYGDDKVFDQISKAFK 114
>pdb|1TFE| Dimerization Domain Of Ef-Ts From T. Thermophilus
Length = 145
Score = 22.7 bits (47), Expect = 6.9
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 26 SKKLSKKELERLLELLALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQ 84
++K+++ L++ LE + LLE K+D +++ E +QQ I +IV++
Sbjct: 85 AEKIAEGRLKKYLEEVVLLEQPFVKDD----------KVKVKELIQQAIAKIGENIVVR 133
>pdb|1FXK|B Chain B, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 109
Score = 22.3 bits (46), Expect = 9.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 20 DIIFHASKKLSKKELERLLELLALLETFIEKED 52
+I+ +K +EL+ LE L L E IE+++
Sbjct: 55 NILIRVAKDELTEELQEKLETLQLREKTIERQE 87
>pdb|1J91|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Atp-Competitive Inhibitor 4,5,6,7-
Tetrabromobenzotriazole
pdb|1J91|B Chain B, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In
Complex With The Atp-Competitive Inhibitor 4,5,6,7-
Tetrabromobenzotriazole
pdb|1JAM|A Chain A, Crystal Structure Of Apo-Form Of Z. Mays Ck2 Protein
Kinase Alpha Subunit
pdb|1LP4|A Chain A, Crystal Structure Of A Binary Complex Of The Catalytic
Subunit Of Protein Kinase Ck2 With Mg-Amppnp
pdb|1LPU|A Chain A, Low Temperature Crystal Structure Of The Apo-Form Of The
Catalytic Subunit Of Protein Kinase Ck2 From Zea Mays
pdb|1LR4|A Chain A, Room Temperature Crystal Structure Of The Apo-Form Of
The Catalytic Subunit Of Protein Kinase Ck2 From Zea
Mays
pdb|1F0Q|A Chain A, Crystal Structure Of The Alpha Subunit Of Protein Kinase
Ck2 In Complex With The Nucleotide Competitive
Inhibitor Emodin
pdb|1DS5|A Chain A, Dimeric Crystal Structure Of The Alpha Subunit In
Complex With Two Beta Peptides Mimicking The
Architecture Of The Tetrameric Protein Kinase Ck2
Holoenzyme.
pdb|1DS5|B Chain B, Dimeric Crystal Structure Of The Alpha Subunit In
Complex With Two Beta Peptides Mimicking The
Architecture Of The Tetrameric Protein Kinase Ck2
Holoenzyme.
pdb|1DS5|C Chain C, Dimeric Crystal Structure Of The Alpha Subunit In
Complex With Two Beta Peptides Mimicking The
Architecture Of The Tetrameric Protein Kinase Ck2
Holoenzyme.
pdb|1DS5|D Chain D, Dimeric Crystal Structure Of The Alpha Subunit In
Complex With Two Beta Peptides Mimicking The
Architecture Of The Tetrameric Protein Kinase Ck2
Holoenzyme
Length = 332
Score = 22.3 bits (46), Expect = 9.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 8 EIFEGNPLDKWNDIIFHASKKLSKKELERLLELL 41
E+FEG ++ I K + KK+++R +++L
Sbjct: 47 EVFEGINVNNNEKCIIKILKPVKKKKIKREIKIL 80
>pdb|1FXK|A Chain A, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 107
Score = 22.3 bits (46), Expect = 9.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 20 DIIFHASKKLSKKELERLLELLALLETFIEKED 52
+I+ +K +EL+ LE L L E IE+++
Sbjct: 56 NILIRVAKDELTEELQEKLETLQLREKTIERQE 88
>pdb|1DAW|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase
Ck2 (Alpha-Subunit) And Mg-Amppnp
pdb|1DAY|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase
Ck2 (Alpha-Subunit) And Mg-Gmppnp
Length = 327
Score = 22.3 bits (46), Expect = 9.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 8 EIFEGNPLDKWNDIIFHASKKLSKKELERLLELL 41
E+FEG ++ I K + KK+++R +++L
Sbjct: 46 EVFEGINVNNNEKCIIKILKPVKKKKIKREIKIL 79
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.134 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,857
Number of Sequences: 13198
Number of extensions: 15169
Number of successful extensions: 69
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 37
length of query: 94
length of database: 2,899,336
effective HSP length: 70
effective length of query: 24
effective length of database: 1,975,476
effective search space: 47411424
effective search space used: 47411424
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)