BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644871|ref|NP_207041.1| neutrophil activating
protein (napA) (bacterioferritin) [Helicobacter pylori 26695]
(144 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JI4|A Chain A, Nap Protein From Helicobacter Pylori >g... 291 2e-80
pdb|1JI5|A Chain A, Dlp-1 From Bacillus Anthracis >gi|21730... 95 3e-21
pdb|1QGH|A Chain A, The X-Ray Structure Of The Unusual Dode... 90 1e-19
pdb|1JIG|A Chain A, Dlp-2 From Bacillus Anthracis >gi|21730... 88 3e-19
pdb|1DPS|A Chain A, The Crystal Structure Of Dps, A Ferriti... 52 3e-08
pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmurama... 29 0.18
pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltrans... 27 0.70
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd (Dic... 27 1.2
pdb|1MAB|B Chain B, Rat Liver F1-Atpase 27 1.2
pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Coval... 27 1.2
pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Coval... 27 1.2
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (... 27 1.2
pdb|1F6K|A Chain A, Crystal Structure Analysis Of N-Acetyln... 26 2.0
pdb|6CA2| Carbonic Anhydrase II (Carbonate Dehydratase) (... 25 4.5
pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And F... 25 4.5
pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoen... 25 4.5
pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-R... 25 4.5
pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus ... 25 4.5
pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase... 25 4.5
pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-... 24 5.9
pdb|7CA2| Carbonic Anhydrase II (Carbonate Dehydratase) (... 24 5.9
pdb|8CA2| Carbonic Anhydrase II (Carbonate Dehydratase) (... 24 5.9
pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannasch... 24 5.9
pdb|1QK1|A Chain A, Crystal Structure Of Human Ubiquitous M... 24 7.7
pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonucle... 24 7.7
pdb|1AX8| Human Obesity Protein, Leptin 24 7.7
pdb|1BAG| Alpha-Amylase From Bacillus Subtilis Complexed ... 24 7.7
>pdb|1JI4|A Chain A, Nap Protein From Helicobacter Pylori
pdb|1JI4|B Chain B, Nap Protein From Helicobacter Pylori
pdb|1JI4|C Chain C, Nap Protein From Helicobacter Pylori
pdb|1JI4|D Chain D, Nap Protein From Helicobacter Pylori
pdb|1JI4|E Chain E, Nap Protein From Helicobacter Pylori
pdb|1JI4|F Chain F, Nap Protein From Helicobacter Pylori
pdb|1JI4|G Chain G, Nap Protein From Helicobacter Pylori
pdb|1JI4|H Chain H, Nap Protein From Helicobacter Pylori
pdb|1JI4|I Chain I, Nap Protein From Helicobacter Pylori
pdb|1JI4|J Chain J, Nap Protein From Helicobacter Pylori
pdb|1JI4|K Chain K, Nap Protein From Helicobacter Pylori
pdb|1JI4|L Chain L, Nap Protein From Helicobacter Pylori
Length = 144
Score = 291 bits (745), Expect = 2e-80
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQ 60
MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQ
Sbjct: 1 MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQ 60
Query: 61 LGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKV 120
LGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKV
Sbjct: 61 LGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKV 120
Query: 121 TVTYADDQLAKLQKSIWMLQAHLA 144
TVTYADDQLAKLQKSIWMLQAHLA
Sbjct: 121 TVTYADDQLAKLQKSIWMLQAHLA 144
>pdb|1JI5|A Chain A, Dlp-1 From Bacillus Anthracis
pdb|1JI5|B Chain B, Dlp-1 From Bacillus Anthracis
pdb|1JI5|C Chain C, Dlp-1 From Bacillus Anthracis
pdb|1JI5|D Chain D, Dlp-1 From Bacillus Anthracis
Length = 142
Score = 95.1 bits (235), Expect = 3e-21
Identities = 49/142 (34%), Positives = 82/142 (57%), Gaps = 1/142 (0%)
Query: 2 KTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQL 61
+ E+L AD VLF K+HNFHW VKG FF +H+ EE+Y E A D++AERI+ +
Sbjct: 1 QVIEVLNKQVADWSVLFTKLHNFHWYVKGPQFFTLHEKFEELYTESATHIDEIAERILAI 60
Query: 62 GHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVT 121
G P+ T+ E ++++ + +E ++ + + I++DY+ + E K+ A+ D++T
Sbjct: 61 GGKPVATMKEYLEISSI-QEAAYGETAEGMVEAIMKDYEMMLVELKKGMEIAQNSDDEMT 119
Query: 122 VTYADDQLAKLQKSIWMLQAHL 143
+L+K WML+A L
Sbjct: 120 SDLLLGIYTELEKHAWMLRAFL 141
>pdb|1QGH|A Chain A, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|B Chain B, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|C Chain C, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|D Chain D, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|E Chain E, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|F Chain F, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|G Chain G, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|H Chain H, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|I Chain I, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|J Chain J, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|K Chain K, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|L Chain L, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site
Length = 156
Score = 89.7 bits (221), Expect = 1e-19
Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 1/142 (0%)
Query: 3 TFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLG 62
T E L H A+ V +K+H HW ++G +FF +H+ +++Y EF + D++AER++ +G
Sbjct: 9 TKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIG 68
Query: 63 HHPLVTLSEAIKLTRVKEETKTSFHSKD-IFKEILEDYKYLEKEFKELSNTAEKEGDKVT 121
P TL E ++ V+E T + D + ++++ + L E+K+ +KEGD VT
Sbjct: 69 GSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVT 128
Query: 122 VTYADDQLAKLQKSIWMLQAHL 143
A + K IWM +A L
Sbjct: 129 NDMLIAFKASIDKHIWMFKAFL 150
>pdb|1JIG|A Chain A, Dlp-2 From Bacillus Anthracis
pdb|1JIG|B Chain B, Dlp-2 From Bacillus Anthracis
pdb|1JIG|C Chain C, Dlp-2 From Bacillus Anthracis
pdb|1JIG|D Chain D, Dlp-2 From Bacillus Anthracis
Length = 146
Score = 88.2 bits (217), Expect = 3e-19
Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 64
E+L A+ VL++K+HN+HW V G FF +H+ EE Y E D+LAERI+ L
Sbjct: 8 EVLNKQVANWNVLYVKLHNYHWYVTGPHFFTLHEKFEEFYNEAGTYIDELAERILALEGK 67
Query: 65 PLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTY 124
PL T+ E + + V E T ++++ + ++ DY L +E KE A + GD T
Sbjct: 68 PLATMKEYLATSSVNEGTSKE-SAEEMVQTLVNDYSALIQELKEGMEVAGEAGD---ATS 123
Query: 125 ADDQLA---KLQKSIWMLQAHL 143
AD LA L++ +WML A L
Sbjct: 124 ADMLLAIHTTLEQHVWMLSAFL 145
>pdb|1DPS|A Chain A, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|D Chain D, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|B Chain B, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|C Chain C, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|E Chain E, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|F Chain F, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|G Chain G, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|H Chain H, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|I Chain I, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|J Chain J, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|K Chain K, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
pdb|1DPS|L Chain L, The Crystal Structure Of Dps, A Ferritin Homolog That
Binds And Protects Dna
Length = 167
Score = 52.0 bits (123), Expect = 3e-08
Identities = 35/141 (24%), Positives = 60/141 (41%), Gaps = 3/141 (2%)
Query: 3 TFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLG 62
T E+L I L + HWN++G +F VH+ + D D +AER VQLG
Sbjct: 29 TVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLG 88
Query: 63 HHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTV 122
L T T +K + +D KE+ + Y + + ++ A+ + +
Sbjct: 89 GVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADIL 148
Query: 123 TYADDQLAKLQKSIWMLQAHL 143
T A L K +W ++ ++
Sbjct: 149 TAAS---RDLDKFLWFIECNI 166
>pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmuramate--Alanine Ligase
(Tm0231) From Thermotoga Maritima At 2.3 A Resolution
Length = 469
Score = 29.3 bits (64), Expect = 0.18
Identities = 17/74 (22%), Positives = 38/74 (50%), Gaps = 3/74 (4%)
Query: 64 HPLVTLSEAIKLTR-VKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEK--EGDKV 120
+ L + EA++ R V +FH + +++DY + E + L TA++ E +K+
Sbjct: 294 YDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENEKI 353
Query: 121 TVTYADDQLAKLQK 134
V + + ++L++
Sbjct: 354 VVIFQPHRYSRLER 367
>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
pdb|1COZ|B Chain B, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
Length = 129
Score = 27.3 bits (59), Expect = 0.70
Identities = 21/66 (31%), Positives = 36/66 (53%), Gaps = 6/66 (9%)
Query: 54 LAERIVQLGHHPLVTLS-EAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNT 112
L ER QLG + +V +S + L ++ K ++HS + K ILE +Y+++ E N
Sbjct: 20 LLERAKQLGDYLVVAISTDEFNL----QKQKKAYHSYEHRKLILETIRYVDEVIPE-KNW 74
Query: 113 AEKEGD 118
+K+ D
Sbjct: 75 EQKKQD 80
>pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 26.6 bits (57), Expect = 1.2
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 54 LAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFK---EILEDYKYLEKEFKELS 110
L+ I +LG +P V ++ +R+ + D+ + +IL+DYK L+ L
Sbjct: 339 LSRAIAELGIYPAVDPLDST--SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILG 396
Query: 111 NTAEKEGDKVTVTYA 125
E DK+TV+ A
Sbjct: 397 MDELSEEDKLTVSRA 411
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
Length = 479
Score = 26.6 bits (57), Expect = 1.2
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 54 LAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFK---EILEDYKYLEKEFKELS 110
L+ I +LG +P V ++ +R+ + D+ + +IL+DYK L+ L
Sbjct: 335 LSRAIAELGIYPAVDPLDST--SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILG 392
Query: 111 NTAEKEGDKVTVTYA 125
E DK+TV+ A
Sbjct: 393 MDELSEEDKLTVSRA 407
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 26.6 bits (57), Expect = 1.2
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 54 LAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFK---EILEDYKYLEKEFKELS 110
L+ I +LG +P V ++ +R+ + D+ + +IL+DYK L+ L
Sbjct: 339 LSRAIAELGIYPAVDPLDST--SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILG 396
Query: 111 NTAEKEGDKVTVTYA 125
E DK+TV+ A
Sbjct: 397 MDELSEEDKLTVSRA 411
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 26.6 bits (57), Expect = 1.2
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 54 LAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFK---EILEDYKYLEKEFKELS 110
L+ I +LG +P V ++ +R+ + D+ + +IL+DYK L+ L
Sbjct: 339 LSRAIAELGIYPAVDPLDST--SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILG 396
Query: 111 NTAEKEGDKVTVTYA 125
E DK+TV+ A
Sbjct: 397 MDELSEEDKLTVSRA 411
>pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 482
Score = 26.6 bits (57), Expect = 1.2
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 54 LAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFK---EILEDYKYLEKEFKELS 110
L+ I +LG +P V ++ +R+ + D+ + +IL+DYK L+ L
Sbjct: 339 LSRAIAELGIYPAVDPLDST--SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILG 396
Query: 111 NTAEKEGDKVTVTYA 125
E DK+TV+ A
Sbjct: 397 MDELSEEDKLTVSRA 411
>pdb|1F6K|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii
pdb|1F74|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii Complexed
With 4-Deoxy-Sialic Acid
pdb|1F74|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii Complexed
With 4-Deoxy-Sialic Acid
pdb|1F7B|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii In Complex
With 4-Oxo-Sialic Acid
pdb|1F5Z|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F6P|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F73|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F7B|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii In Complex
With 4-Oxo-Sialic Acid
pdb|1F6K|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii
Length = 293
Score = 25.8 bits (55), Expect = 2.0
Identities = 26/88 (29%), Positives = 37/88 (41%), Gaps = 9/88 (10%)
Query: 19 MKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRV 78
MKV + V G+ N +TEE E F D+ ++I + V L EA++L +
Sbjct: 37 MKVDGLY--VGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKY 94
Query: 79 KEE-------TKTSFHSKDIFKEILEDY 99
E T F+ K F EI Y
Sbjct: 95 ATELGYDCLSAVTPFYYKFSFPEIKHYY 122
>pdb|6CA2| Carbonic Anhydrase II (Carbonate Dehydratase) (HCA II)
(E.C.4.2.1.1) Mutant With Val 143 Replaced With Phe
(V143F)
Length = 260
Score = 24.6 bits (52), Expect = 4.5
Identities = 21/82 (25%), Positives = 38/82 (45%), Gaps = 5/82 (6%)
Query: 20 KVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVK 79
++H HWN K DF + + + F +F L + G +V + ++IK T+ K
Sbjct: 117 ELHLVHWNTKYGDFGKAVQQPDGL--AFLGIF--LKVGSAKPGLQKVVDVLDSIK-TKGK 171
Query: 80 EETKTSFHSKDIFKEILEDYKY 101
T+F + + E L+ + Y
Sbjct: 172 SADFTNFDPRGLLPESLDYWTY 193
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 24.6 bits (52), Expect = 4.5
Identities = 17/63 (26%), Positives = 35/63 (54%), Gaps = 10/63 (15%)
Query: 61 LGHHPLVTLS---EAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEG 117
+G+H L + I++ ++K + + H K + + +LE+ EK+ +E+ AEKE
Sbjct: 285 MGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQMERAMLEN----EKKKREM---AEKEK 337
Query: 118 DKV 120
+K+
Sbjct: 338 EKI 340
>pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|M Chain M, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|D Chain D, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 1524
Score = 24.6 bits (52), Expect = 4.5
Identities = 23/105 (21%), Positives = 49/105 (45%), Gaps = 8/105 (7%)
Query: 38 KATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILE 97
KA + E D+ D++ + + ++ H +V L+ A L R+ + +F + + ++
Sbjct: 671 KAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQ---AFQPVLVEGQSIQ 727
Query: 98 DYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAH 142
+ + + F A+ +GD++ V A+ + I ML AH
Sbjct: 728 LHPLVCEAFN-----ADFDGDQMAVHVPLSSFAQAEARIQMLSAH 767
>pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 1264
Score = 24.6 bits (52), Expect = 4.5
Identities = 23/105 (21%), Positives = 49/105 (45%), Gaps = 8/105 (7%)
Query: 38 KATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILE 97
KA + E D+ D++ + + ++ H +V L+ A L R+ + +F + + ++
Sbjct: 411 KAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQ---AFQPVLVEGQSIQ 467
Query: 98 DYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAH 142
+ + + F A+ +GD++ V A+ + I ML AH
Sbjct: 468 LHPLVCEAFN-----ADFDGDQMAVHVPLSSFAQAEARIQMLSAH 507
>pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
Length = 1265
Score = 24.6 bits (52), Expect = 4.5
Identities = 23/105 (21%), Positives = 49/105 (45%), Gaps = 8/105 (7%)
Query: 38 KATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILE 97
KA + E D+ D++ + + ++ H +V L+ A L R+ + +F + + ++
Sbjct: 411 KAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQ---AFQPVLVEGQSIQ 467
Query: 98 DYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAH 142
+ + + F A+ +GD++ V A+ + I ML AH
Sbjct: 468 LHPLVCEAFN-----ADFDGDQMAVHVPLSSFAQAEARIQMLSAH 507
>pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|N Chain N, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1524
Score = 24.6 bits (52), Expect = 4.5
Identities = 23/105 (21%), Positives = 49/105 (45%), Gaps = 8/105 (7%)
Query: 38 KATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILE 97
KA + E D+ D++ + + ++ H +V L+ A L R+ + +F + + ++
Sbjct: 671 KAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQ---AFQPVLVEGQSIQ 727
Query: 98 DYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQAH 142
+ + + F A+ +GD++ V A+ + I ML AH
Sbjct: 728 LHPLVCEAFN-----ADFDGDQMAVHVPLSSFAQAEARIQMLSAH 767
>pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
Length = 343
Score = 24.3 bits (51), Expect = 5.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 83 KTSFHSKDIFKEILEDYKYLEKEFKELSNTAEK 115
K KD++ EI + L++ KEL T EK
Sbjct: 193 KRKMPGKDVYVEIKPELVVLDEVLKELKITREK 225
>pdb|7CA2| Carbonic Anhydrase II (Carbonate Dehydratase) (HCA II)
(E.C.4.2.1.1) Mutant With Val 143 Replaced With Gly
(V143G)
Length = 260
Score = 24.3 bits (51), Expect = 5.9
Identities = 22/82 (26%), Positives = 39/82 (46%), Gaps = 5/82 (6%)
Query: 20 KVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVK 79
++H HWN K DF KA ++ + A + L + G +V + ++IK T+ K
Sbjct: 117 ELHLVHWNTKYGDF---GKAVQQ-PDGLAGLGIFLKVGSAKPGLQKVVDVLDSIK-TKGK 171
Query: 80 EETKTSFHSKDIFKEILEDYKY 101
T+F + + E L+ + Y
Sbjct: 172 SADFTNFDPRGLLPESLDYWTY 193
>pdb|8CA2| Carbonic Anhydrase II (Carbonate Dehydratase) (HCA II)
(E.C.4.2.1.1) Mutant With Val 143 Replaced With His
(V143H)
Length = 260
Score = 24.3 bits (51), Expect = 5.9
Identities = 22/82 (26%), Positives = 39/82 (46%), Gaps = 5/82 (6%)
Query: 20 KVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVK 79
++H HWN K DF KA ++ + A + L + G +V + ++IK T+ K
Sbjct: 117 ELHLVHWNTKYGDF---GKAVQQ-PDGLAHLGIFLKVGSAKPGLQKVVDVLDSIK-TKGK 171
Query: 80 EETKTSFHSKDIFKEILEDYKY 101
T+F + + E L+ + Y
Sbjct: 172 SADFTNFDPRGLLPESLDYWTY 193
>pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannaschii
pdb|1A77| Flap Endonuclease-1 From Methanococcus Jannaschii
Length = 326
Score = 24.3 bits (51), Expect = 5.9
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 42 EIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKY 101
E+ E+ DDL + + +G + I R E ++ +KD+ K+ +E Y
Sbjct: 202 EVLEDLRISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRSGV-AKDVLKKEVEYYDE 260
Query: 102 LEKEFKE 108
+++ FKE
Sbjct: 261 IKRIFKE 267
>pdb|1QK1|A Chain A, Crystal Structure Of Human Ubiquitous Mitochondrial
Creatine Kinase
pdb|1QK1|B Chain B, Crystal Structure Of Human Ubiquitous Mitochondrial
Creatine Kinase
pdb|1QK1|C Chain C, Crystal Structure Of Human Ubiquitous Mitochondrial
Creatine Kinase
pdb|1QK1|D Chain D, Crystal Structure Of Human Ubiquitous Mitochondrial
Creatine Kinase
pdb|1QK1|E Chain E, Crystal Structure Of Human Ubiquitous Mitochondrial
Creatine Kinase
pdb|1QK1|F Chain F, Crystal Structure Of Human Ubiquitous Mitochondrial
Creatine Kinase
pdb|1QK1|G Chain G, Crystal Structure Of Human Ubiquitous Mitochondrial
Creatine Kinase
pdb|1QK1|H Chain H, Crystal Structure Of Human Ubiquitous Mitochondrial
Creatine Kinase
Length = 379
Score = 23.9 bits (50), Expect = 7.7
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 41 EEIYEEFADMFDDLAE 56
EE YE FAD+FD + +
Sbjct: 74 EETYEVFADLFDPVIQ 89
>pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
Length = 230
Score = 23.9 bits (50), Expect = 7.7
Identities = 11/38 (28%), Positives = 21/38 (54%)
Query: 71 EAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKE 108
E +K VK+ + + + + K++LE+ Y+EK E
Sbjct: 31 EELKKLGVKDSKELTKNKRAYLKKLLENLGYVEKRILE 68
>pdb|1AX8| Human Obesity Protein, Leptin
Length = 146
Score = 23.9 bits (50), Expect = 7.7
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 62 GHHPLVTLSEAIKLTRVKEETKTSFHSKDIFK 93
G HP++TLS+ + V ++ TS S+++ +
Sbjct: 44 GLHPILTLSKMDQTLAVYQQILTSMPSRNVIQ 75
>pdb|1BAG| Alpha-Amylase From Bacillus Subtilis Complexed With Maltopentaose
Length = 425
Score = 23.9 bits (50), Expect = 7.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 99 YKYLEKEFKELSNTAEKEGDKVTV 122
Y E+EFKE+ AE+ G KV V
Sbjct: 73 YLGTEQEFKEMCAAAEEYGIKVIV 96
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.134 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 801,482
Number of Sequences: 13198
Number of extensions: 29629
Number of successful extensions: 138
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 27
length of query: 144
length of database: 2,899,336
effective HSP length: 80
effective length of query: 64
effective length of database: 1,843,496
effective search space: 117983744
effective search space used: 117983744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)