BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644873|ref|NP_207043.1| hypothetical protein
[Helicobacter pylori 26695]
(105 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J8M|F Chain F, Signal Recognition Particle Conserved G... 25 0.99
pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved G... 25 0.99
pdb|1HDH|A Chain A, Arylsulfatase From Pseudomonas Aerugino... 25 1.7
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 24 2.9
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus The... 23 3.7
pdb|2DPM|A Chain A, Dpnm Dna Adenine Methyltransferase From... 23 4.9
pdb|1NNT| Ovotransferrin (Monoferric N-Terminal Half-Mole... 23 6.4
pdb|1QQL|A Chain A, The Crystal Structure Of Fibroblast Gro... 23 6.4
pdb|1AIV| Apo Ovotransferrin >gi|1127086|pdb|1OVT| Mol_i... 23 6.4
pdb|2DVH| The Y64a Mutant Of Cytochrome C553 From Desulfo... 22 8.3
pdb|1EJQ|A Chain A, Solution Structure Of The Syndecan-4 Wh... 22 8.3
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 25.4 bits (54), Expect = 0.99
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 76 KDTLSKELSGNFGYSEMLFNFLKEQEK 102
+DT+ K L+G+ Y + + +F+KE +K
Sbjct: 8 RDTVRKFLTGSSSYDKAVEDFIKELQK 34
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 25.4 bits (54), Expect = 0.99
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 76 KDTLSKELSGNFGYSEMLFNFLKEQEK 102
+DT+ K L+G+ Y + + +F+KE +K
Sbjct: 8 RDTVRKFLTGSSSYDKAVEDFIKELQK 34
>pdb|1HDH|A Chain A, Arylsulfatase From Pseudomonas Aeruginosa
pdb|1HDH|B Chain B, Arylsulfatase From Pseudomonas Aeruginosa
Length = 536
Score = 24.6 bits (52), Expect = 1.7
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 75 YKDTLSKELSGNFGYSEMLFNFLKEQEKQKP 105
Y DTL + + + + L +LKE+++ +P
Sbjct: 170 YLDTLPEGFYSSDAFGDKLLQYLKERDQSRP 200
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 23.9 bits (50), Expect = 2.9
Identities = 16/65 (24%), Positives = 32/65 (48%), Gaps = 8/65 (12%)
Query: 13 NVSKLASEEKLKALAQNKNDKLLKEQTDSFEALLLKFMLDSAMKMDNPLYPKAPGDEIYA 72
++S L + + + A+NK +K ++ ++ EAL ++++ L A E+
Sbjct: 1124 HISDLQEDLESEKAARNKAEKQKRDLSEELEAL--------KTELEDTLDTTATQQELRG 1175
Query: 73 SMYKD 77
S YKD
Sbjct: 1176 SDYKD 1180
>pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
Length = 878
Score = 23.5 bits (49), Expect = 3.7
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 4 NNKAMLEQYNVSKLASEEKLKALAQNKNDKLLKEQTDSFEALLLKFMLDSAMKMDNPLY 62
+ +A+LE V + + E K + LK+ T+ EAL + + M+ N LY
Sbjct: 698 DREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALY 756
>pdb|2DPM|A Chain A, Dpnm Dna Adenine Methyltransferase From Streptoccocus
Pneumoniae Complexed With S-Adenosylmethionine
Length = 284
Score = 23.1 bits (48), Expect = 4.9
Identities = 12/53 (22%), Positives = 23/53 (42%)
Query: 11 QYNVSKLASEEKLKALAQNKNDKLLKEQTDSFEALLLKFMLDSAMKMDNPLYP 63
+Y K+ EE + A++ N+ L+ + FE ++ + D P P
Sbjct: 147 RYKNPKIVDEELISAISVYINNNQLEIKVGDFEKAIVDVRTGDFVYFDPPYIP 199
>pdb|1NNT| Ovotransferrin (Monoferric N-Terminal Half-Molecule)
Length = 328
Score = 22.7 bits (47), Expect = 6.4
Identities = 15/54 (27%), Positives = 27/54 (49%), Gaps = 5/54 (9%)
Query: 3 NNNKAMLEQYNVS-----KLASEEKLKALAQNKNDKLLKEQTDSFEALLLKFML 51
NN + + +Q +S K + +KA+A N+ D + + +FEA L + L
Sbjct: 17 NNLRDLTQQERISLTCVQKATYLDCIKAIANNEADAISLDGGQAFEAGLAPYKL 70
>pdb|1QQL|A Chain A, The Crystal Structure Of Fibroblast Growth Factor 71
Chimera
Length = 140
Score = 22.7 bits (47), Expect = 6.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 26 LAQNKNDKLLKEQTDSFEALLLK 48
LA NK KL +QT + E L L+
Sbjct: 65 LAMNKEGKLYAKQTPNEECLFLE 87
>pdb|1AIV| Apo Ovotransferrin
pdb|1OVT| Mol_id: 1; Molecule: Ovotransferrin; Chain: Null; Synonym:
Conalbumin; Heterogen: Iron (Fe); Heterogen:
Bicarbonate (Co3); Other_details: Diferric Form
Length = 686
Score = 22.7 bits (47), Expect = 6.4
Identities = 15/54 (27%), Positives = 27/54 (49%), Gaps = 5/54 (9%)
Query: 3 NNNKAMLEQYNVS-----KLASEEKLKALAQNKNDKLLKEQTDSFEALLLKFML 51
NN + + +Q +S K + +KA+A N+ D + + +FEA L + L
Sbjct: 21 NNLRDLTQQERISLTCVQKATYLDCIKAIANNEADAISLDGGQAFEAGLAPYKL 74
>pdb|2DVH| The Y64a Mutant Of Cytochrome C553 From Desulfovibrio Vulgaris
Hildenborough, Nmr, 39 Structures
Length = 79
Score = 22.3 bits (46), Expect = 8.3
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 6 KAMLEQYNVSKLASEEKLKALA 27
KAM+ N K AS+E+LKALA
Sbjct: 54 KAMMT--NAVKKASDEELKALA 73
>pdb|1EJQ|A Chain A, Solution Structure Of The Syndecan-4 Whole Cytoplasmic
Domain In The Presence Of Phosphatidylinositol 4,5-
Bisphosphate
pdb|1EJQ|B Chain B, Solution Structure Of The Syndecan-4 Whole Cytoplasmic
Domain In The Presence Of Phosphatidylinositol 4,5-
Bisphosphate
pdb|1EJP|A Chain A, Solution Structure Of The Syndecan-4 Whole Cytoplasmic
Domain
pdb|1EJP|B Chain B, Solution Structure Of The Syndecan-4 Whole Cytoplasmic
Domain
Length = 28
Score = 22.3 bits (46), Expect = 8.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 60 PLYPKAPGDEIYA 72
P+Y KAP +E YA
Sbjct: 16 PIYKKAPTNEFYA 28
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.310 0.128 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 555,032
Number of Sequences: 13198
Number of extensions: 19758
Number of successful extensions: 48
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 11
length of query: 105
length of database: 2,899,336
effective HSP length: 81
effective length of query: 24
effective length of database: 1,830,298
effective search space: 43927152
effective search space used: 43927152
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)