BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644876|ref|NP_207046.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(362 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J5V|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluc... 28 2.1
pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannasch... 27 3.6
pdb|1JFR|A Chain A, Crystal Structure Of The Streptomyces E... 27 4.7
pdb|1F1M|A Chain A, Crystal Structure Of Outer Surface Prot... 27 4.7
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 26 6.2
>pdb|1J5V|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase
(Tm0067) From Thermotoga Maritima At 2.3 A Resolution
pdb|1J5V|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase
(Tm0067) From Thermotoga Maritima At 2.3 A Resolution
pdb|1J5V|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase
(Tm0067) From Thermotoga Maritima At 2.3 A Resolution
pdb|1J5V|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase
(Tm0067) From Thermotoga Maritima At 2.3 A Resolution
Length = 351
Score = 27.7 bits (60), Expect = 2.1
Identities = 27/111 (24%), Positives = 50/111 (44%), Gaps = 5/111 (4%)
Query: 119 GKNQGIFRNDAINVMDSRGLTVSIELTVQYRLNPQTTPQTIATYGLSWEQKIINPVVRDV 178
GK + DA+ V + +G+TVS +L + RL + Q + + +I +
Sbjct: 152 GKELPLILEDALKVANEKGVTVSCDLNYRARLWTKEEAQKVXIPFXEYVDVLI--ANEED 209
Query: 179 VRSVVGRYPAEDLPIKRNEIAALINSGINKEVSKLPNTPVELSSIQLREIV 229
+ V+G E L +K ++ + I +EV++ N + I LRE +
Sbjct: 210 IEKVLG-ISVEGLDLKTGKLNREAYAKIAEEVTRKYN--FKTVGITLRESI 257
>pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannaschii
pdb|1A77| Flap Endonuclease-1 From Methanococcus Jannaschii
Length = 326
Score = 26.9 bits (58), Expect = 3.6
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 194 KRNEIAALINSGINKEVSKLPN--TPVELSSIQLREIVLPAKIKEQIEKVQIARQESERV 251
++ EI + N K + L N TP+ + + P K+KE+ KV+ +E +
Sbjct: 50 RKGEITSAYNGVFYKTIHLLENDITPIWVFDGE------PPKLKEKTRKVRREMKEKAEL 103
Query: 252 KYEVERSKQEAQKQAALAK 270
K + K++ ++ A AK
Sbjct: 104 KMKEAIKKEDFEEAAKYAK 122
>pdb|1JFR|A Chain A, Crystal Structure Of The Streptomyces Exfoliatus Lipase At
1.9a Resolution: A Model For A Family Of Platelet-
Activating Factor Acetylhydrolases
pdb|1JFR|B Chain B, Crystal Structure Of The Streptomyces Exfoliatus Lipase At
1.9a Resolution: A Model For A Family Of Platelet-
Activating Factor Acetylhydrolases
Length = 262
Score = 26.6 bits (57), Expect = 4.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 142 IELTVQYRLNPQTTPQTIATYGLSWEQKIINPVVR 176
+EL P T+ TIA Y +SW ++ I+ R
Sbjct: 202 LELRGASHFTPNTSDTTIAKYSISWLKRFIDSDTR 236
>pdb|1F1M|A Chain A, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|B Chain B, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|C Chain C, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|D Chain D, Crystal Structure Of Outer Surface Protein C (Ospc)
Length = 164
Score = 26.6 bits (57), Expect = 4.7
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 189 EDLPIKRNEIAALINSGINKEVSKLPNTPVELSSIQLREIVLPAKIKEQIEKVQIARQES 248
E L +E+A I I +VS L N S+ ++ I ++I ++ +S
Sbjct: 26 ETLLTSIDELAKAIGKKIKSDVS-LDNEADHNGSLMSGAYLISTLITKKISAIK----DS 80
Query: 249 ERVKYEVERSKQEAQKQAALAKGE 272
+K E+E++K+ +++ A KGE
Sbjct: 81 GELKAEIEKAKKCSEEFTAKLKGE 104
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 26.2 bits (56), Expect = 6.2
Identities = 19/83 (22%), Positives = 41/83 (48%), Gaps = 13/83 (15%)
Query: 208 KEVSKLPNTPVELSSIQLREIVLPAKIKEQIEKV-------------QIARQESERVKYE 254
K ++KL N + S + K ++++EK+ QIA +++ + +
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087
Query: 255 VERSKQEAQKQAALAKGEADANR 277
+ +K+E + QAALA+ E + ++
Sbjct: 1088 AQLAKKEEELQAALARLEDETSQ 1110
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.132 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,915,807
Number of Sequences: 13198
Number of extensions: 74314
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 6
length of query: 362
length of database: 2,899,336
effective HSP length: 89
effective length of query: 273
effective length of database: 1,724,714
effective search space: 470846922
effective search space used: 470846922
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)