BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644878|ref|NP_207048.1| oligopeptide ABC
transporter, ATP-binding protein (oppD) [Helicobacter pylori 26695]
(516 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacteria... 117 2e-27
pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding... 115 9e-27
pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Pe... 94 3e-20
pdb|1G29|1 Chain 1, Malk >gi|12084695|pdb|1G29|2 Chain 2, Malk 86 8e-18
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 84 3e-17
pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformati... 80 5e-16
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 79 9e-16
pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atp... 78 2e-15
pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B... 56 1e-08
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 55 1e-08
pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Ra... 35 0.026
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase >... 35 0.026
pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication In... 32 0.17
pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Act... 32 0.17
pdb|2FHA| Human H Chain Ferritin >gi|229918|pdb|1FHA| Fe... 30 0.85
pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfon... 29 1.1
pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bon... 29 1.1
pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomet... 28 1.9
pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Ch... 28 2.5
pdb|1HM6|A Chain A, X-Ray Structure Of Full-Length Annexin ... 27 4.2
pdb|1IMV|A Chain A, 2.85 A Crystal Structure Of Pedf 27 5.5
pdb|1JBK|A Chain A, Crystal Structure Of The First Nuceloti... 26 9.4
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 117 bits (294), Expect = 2e-27
Identities = 69/211 (32%), Positives = 122/211 (57%), Gaps = 7/211 (3%)
Query: 15 FSLQNINISLNPSERVAIVGESGSGKSSIANIIMRLNPRFKPHNGEVLFETTNLLKESEE 74
++L+N+N+++ E V+I+G SGSGKS++ NII L+ KP GEV + ++
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD---KPTEGEVYIDNIKTNDLDDD 75
Query: 75 FMQHLRGNAIAYIAQDPLSSLNPLHKIGKQMSEAYFLHYKNA-SKTLLKEQVLNAMKQVQ 133
+ +R + I ++ Q +L PL + + Y+ A S +++ L +K +
Sbjct: 76 ELTKIRRDKIGFVFQQ--FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE 133
Query: 134 LDEKFLDRYPYELSGGQRQRVCIAMGIINAPKLLICDEPTTALDAQIQNQILDLPKQLSA 193
L+E+F + P +LSGGQ+QRV IA + N P +++ D+PT ALD++ +I+ L K+L+
Sbjct: 134 LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNE 193
Query: 194 EKNIALLFISHDLKAVKRLADRVYVLKKGEI 224
E ++ ++HD+ V R +R+ LK GE+
Sbjct: 194 EDGKTVVVVTHDIN-VARFGERIIYLKDGEV 223
Score = 93.6 bits (231), Expect = 5e-20
Identities = 70/207 (33%), Positives = 110/207 (52%), Gaps = 8/207 (3%)
Query: 288 IASVNFSLKAKENIGIIGESGSGKSSLA--LGLLKLALNSGEEKILGQSVGSLNSKAFKP 345
+ +VN ++K E + I+G SGSGKS++ +G L GE I L+
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-TEGEVYIDNIKTNDLDDDELTK 79
Query: 346 YRKI-LQMVFQDPYASLNPRLSIQSILTEALRFAYPKA-SKEEWHHLAKLCLEEVCLSHE 403
R+ + VFQ +L P L+ + L F Y A S EE A CL+ L
Sbjct: 80 IRRDKIGFVFQQ--FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137
Query: 404 LLNSYAYELSGGERQRVAIARAIALKPKIILLDEPTSALDKSIQKSVLELLLDLQEKQDL 463
N +LSGG++QRVAIARA+A P IIL D+PT ALD + +++LL L E+
Sbjct: 138 FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGK 197
Query: 464 SYLFISHDLDVIKAFCDKVLVISEGKV 490
+ + ++HD++V + F ++++ + +G+V
Sbjct: 198 TVVVVTHDINVAR-FGERIIYLKDGEV 223
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 115 bits (289), Expect = 9e-27
Identities = 70/211 (33%), Positives = 119/211 (56%), Gaps = 7/211 (3%)
Query: 15 FSLQNINISLNPSERVAIVGESGSGKSSIANIIMRLNPRFKPHNGEVLFETTNLLKESEE 74
++L+N+N+++ E V+I G SGSGKS+ NII L+ KP GEV + ++
Sbjct: 19 YALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLD---KPTEGEVYIDNIKTNDLDDD 75
Query: 75 FMQHLRGNAIAYIAQDPLSSLNPLHKIGKQMSEAYFLHYKNA-SKTLLKEQVLNAMKQVQ 133
+ +R + I ++ Q +L PL + + Y+ A S +++ L +K +
Sbjct: 76 ELTKIRRDKIGFVFQQ--FNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAE 133
Query: 134 LDEKFLDRYPYELSGGQRQRVCIAMGIINAPKLLICDEPTTALDAQIQNQILDLPKQLSA 193
L+E+F + P +LSGGQ+QRV IA + N P +++ DEPT ALD++ +I L K+L+
Sbjct: 134 LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNE 193
Query: 194 EKNIALLFISHDLKAVKRLADRVYVLKKGEI 224
E ++ ++HD+ V R +R+ LK GE+
Sbjct: 194 EDGKTVVVVTHDIN-VARFGERIIYLKDGEV 223
Score = 92.0 bits (227), Expect = 1e-19
Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 8/207 (3%)
Query: 288 IASVNFSLKAKENIGIIGESGSGKSSLA--LGLLKLALNSGEEKILGQSVGSLNSKAFKP 345
+ +VN ++K E + I G SGSGKS+ +G L GE I L+
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKP-TEGEVYIDNIKTNDLDDDELTK 79
Query: 346 YRKI-LQMVFQDPYASLNPRLSIQSILTEALRFAYPKA-SKEEWHHLAKLCLEEVCLSHE 403
R+ + VFQ +L P L+ + L F Y A S EE A CL+ L
Sbjct: 80 IRRDKIGFVFQQ--FNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEER 137
Query: 404 LLNSYAYELSGGERQRVAIARAIALKPKIILLDEPTSALDKSIQKSVLELLLDLQEKQDL 463
N +LSGG++QRVAIARA+A P IIL DEPT ALD + + +LL L E+
Sbjct: 138 FANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGK 197
Query: 464 SYLFISHDLDVIKAFCDKVLVISEGKV 490
+ + ++HD++V + F ++++ + +G+V
Sbjct: 198 TVVVVTHDINVAR-FGERIIYLKDGEV 223
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 94.4 bits (233), Expect = 3e-20
Identities = 66/248 (26%), Positives = 125/248 (49%), Gaps = 20/248 (8%)
Query: 2 LEIKNLNCVLNAHFSLQNINISLNPSERVAIVGESGSGKSSIANIIMRLNPRFKPHNGEV 61
L + +L+ H L+ +++ + ++I+G SGSGKS+ I L KP G +
Sbjct: 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE---KPSEGAI 63
Query: 62 LFETTNL---------LKESEEFMQHLRGNAIAYIAQ--DPLSSLNPLHKIGKQMSEAYF 110
+ N+ LK +++ L + + Q + S + L + + +
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 123
Query: 111 LHYKNASKTLLKEQVLNAMKQVQLDEKFLDRYPYELSGGQRQRVCIAMGIINAPKLLICD 170
L SK +E+ L + +V +DE+ +YP LSGGQ+QRV IA + P +L+ D
Sbjct: 124 L-----SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFD 178
Query: 171 EPTTALDAQIQNQILDLPKQLSAEKNIALLFISHDLKAVKRLADRVYVLKKGEIVETNLT 230
EPT+ALD ++ ++L + +QL AE+ ++ ++H++ + ++ V L +G+I E
Sbjct: 179 EPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP 237
Query: 231 KDLFNDPK 238
+ +F +P+
Sbjct: 238 EQVFGNPQ 245
Score = 92.4 bits (228), Expect = 1e-19
Identities = 68/244 (27%), Positives = 122/244 (49%), Gaps = 21/244 (8%)
Query: 287 LIASVNFSLKAKENIGIIGESGSGKSSLALGLLKLALNSGEEKIL--GQSVGSLNSK--- 341
++ V+ +A + I IIG SGSGKS+ L + E I+ GQ++ + K
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTF-LRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 79
Query: 342 -------AFKPYRKILQMVFQ--DPYASLNPRLSIQSILTEALRFAYPKASKEEWHHLAK 392
+ R L MVFQ + ++ + ++ + L + A + +LAK
Sbjct: 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAK 139
Query: 393 LCLEEVCLSHELLNSYAYELSGGERQRVAIARAIALKPKIILLDEPTSALDKSIQKSVLE 452
+ ++E Y LSGG++QRV+IARA+A++P ++L DEPTSALD + VL
Sbjct: 140 VGIDE-----RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR 194
Query: 453 LLLDLQEKQDLSYLFISHDLDVIKAFCDKVLVISEGKVVEMNTIKEVFDNPKHAYTKRLL 512
++ L E + + + ++H++ + V+ + +GK+ E ++VF NP+ ++ L
Sbjct: 195 IMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFL 253
Query: 513 ESRL 516
+ L
Sbjct: 254 KGSL 257
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 86.3 bits (212), Expect = 8e-18
Identities = 64/229 (27%), Positives = 117/229 (50%), Gaps = 7/229 (3%)
Query: 288 IASVNFSLKAKENIGIIGESGSGKSSLALGLLKLALNSGEEKILGQSVGSLNSKAF--KP 345
+ ++ +K E + ++G SG GK++ + L S + +G + + K P
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 346 YRKILQMVFQDPYASLNPRLSIQSILTEALRFAYPKASKEEWHHLAKLCLEEVCLSHELL 405
+ + MVFQ YA L P +++ + L+ K ++E + E + L+ ELL
Sbjct: 79 KDRDIAMVFQS-YA-LYPHMTVYDNIAFPLKLR--KVPRQEIDQRVREVAELLGLT-ELL 133
Query: 406 NSYAYELSGGERQRVAIARAIALKPKIILLDEPTSALDKSIQKSVLELLLDLQEKQDLSY 465
N ELSGG+RQRVA+ RAI KP++ L+DEP S LD ++ + L LQ + ++
Sbjct: 134 NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTT 193
Query: 466 LFISHDLDVIKAFCDKVLVISEGKVVEMNTIKEVFDNPKHAYTKRLLES 514
++++HD D++ V++ G + ++ + EV+D P + + + S
Sbjct: 194 IYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGS 242
Score = 77.4 bits (189), Expect = 4e-15
Identities = 54/263 (20%), Positives = 126/263 (47%), Gaps = 8/263 (3%)
Query: 16 SLQNINISLNPSERVAIVGESGSGKSSIANIIMRLNPRFKPHNGEVLFETTNLLKESEEF 75
+++ +++ + E + ++G SG GK++ +I L +P G++ + +
Sbjct: 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE---EPSRGQIYIGDKLVADPEKGI 74
Query: 76 MQHLRGNAIAYIAQDPLSSLNPLHKIGKQMSEAYFLHYKNASKTLLKEQVLNAMKQVQLD 135
+ IA + Q +L P + + A+ L + + + ++V + + L
Sbjct: 75 FVPPKDRDIAMVFQS--YALYPHMTVYDNI--AFPLKLRKVPRQEIDQRVREVAELLGLT 130
Query: 136 EKFLDRYPYELSGGQRQRVCIAMGIINAPKLLICDEPTTALDAQIQNQILDLPKQLSAEK 195
E L+R P ELSGGQRQRV + I+ P++ + DEP + LDA+++ ++ K+L +
Sbjct: 131 E-LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL 189
Query: 196 NIALLFISHDLKAVKRLADRVYVLKKGEIVETNLTKDLFNDPKHEYSKLLIQASNLPAKN 255
+ ++++HD + DR+ V+ +G + + ++++ P + + I + + +
Sbjct: 190 GVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGSPPMNFLD 249
Query: 256 LKALDETLLEVKDFSVYYLQKRF 278
++ ++ +F + L +F
Sbjct: 250 AIVTEDGFVDFGEFRLKLLPDQF 272
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 84.3 bits (207), Expect = 3e-17
Identities = 74/225 (32%), Positives = 118/225 (51%), Gaps = 24/225 (10%)
Query: 16 SLQNINISLNPSERVAIVGESGSGKSSIANIIMRLNPRFKPHNGEVLFETTNLLKESEEF 75
+L+NIN+ + + VA+VG SGSGKS+IA++I R + GE+L + +L E
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF---YDIDEGEILMDGHDL---REYT 411
Query: 76 MQHLRGNAIAYIAQDP-LSSLNPLHKIGKQMSEAYFLHYKNASKTLLKE--QVLNAMKQV 132
+ LR N +A ++Q+ L + + I +E Y S+ ++E ++ AM +
Sbjct: 412 LASLR-NQVALVSQNVHLFNDTVANNIAYARTEQY-------SREQIEEAARMAYAMDFI 463
Query: 133 QLDEKFLDRYPYE----LSGGQRQRVCIAMGIINAPKLLICDEPTTALDAQIQNQILDLP 188
+ LD E LSGGQRQR+ IA ++ +LI DE T+ALD + + I
Sbjct: 464 NKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 523
Query: 189 KQLSAEKNIALLFISHDLKAVKRLADRVYVLKKGEIVETNLTKDL 233
+L +KN L I+H L +++ AD + V++ G IVE DL
Sbjct: 524 DEL--QKNRTSLVIAHRLSTIEK-ADEIVVVEDGVIVERGTHNDL 565
Score = 78.2 bits (191), Expect = 2e-15
Identities = 64/256 (25%), Positives = 125/256 (48%), Gaps = 13/256 (5%)
Query: 251 LPAKNLKALDETLLEVKDFSVYYLQKRFFRPSLKKPLIASVNFSLKAKENIGIIGESGSG 310
L ++ K + ++E V + F P P + ++N + A + + ++G SGSG
Sbjct: 322 LDSEQEKDEGKRVIERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSG 381
Query: 311 KSSLALGLLKLA-LNSGEEKILGQSVGSLNSKAFKPYRKILQM---VFQDPYASLNPRLS 366
KS++A + + ++ GE + G + + + ++ +F D A+
Sbjct: 382 KSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYAR 441
Query: 367 IQSILTEALRFAYPKASKEEWHHLAKLCLEEVCLSHELLNSYAYELSGGERQRVAIARAI 426
+ E + A A ++ + L+ V + +L LSGG+RQR+AIARA+
Sbjct: 442 TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVL------LSGGQRQRIAIARAL 495
Query: 427 ALKPKIILLDEPTSALDKSIQKSVLELLLDLQEKQDLSYLFISHDLDVIKAFCDKVLVIS 486
I++LDE TSALD ++++ L +LQ+ + + L I+H L I+ D+++V+
Sbjct: 496 LRDSPILILDEATSALDTESERAIQAALDELQKNR--TSLVIAHRLSTIEK-ADEIVVVE 552
Query: 487 EGKVVEMNTIKEVFDN 502
+G +VE T ++ ++
Sbjct: 553 DGVIVERGTHNDLLEH 568
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 80.1 bits (196), Expect = 5e-16
Identities = 63/249 (25%), Positives = 111/249 (44%), Gaps = 17/249 (6%)
Query: 1 MLEIKNLNCVLNAHFSLQNINISLNPSERVAIVGESGSGKSSIANIIMRLNPRFKPHNGE 60
+L +N+ +L ++IS+N + I+G +GSGKS++ N+I K G
Sbjct: 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF---LKADEGR 63
Query: 61 VLFETTNLLKESEEFMQHLRGNAIAYIAQDPLSSLNPLHKI-------GKQMSEAYFLHY 113
V FE ++ + + H G + PL + L + G+ + F
Sbjct: 64 VYFENKDITNKEPAELYHY-GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKK 122
Query: 114 KNASKTLLKEQVLNAMKQVQLDEKFLDRYPYELSGGQRQRVCIAMGIINAPKLLICDEPT 173
+ + E+ ++ ++L + DR ELSGGQ + V I ++ PK+++ DEP
Sbjct: 123 WIPKEEEMVEKAFKILEFLKLSHLY-DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPI 181
Query: 174 TALDAQIQNQILDLPKQLSAEKNIALLFISHDLKAVKRLADRVYVLKKGEIVETNL---- 229
+ + + I + +L A K I L I H L V D +YV+ G+I+
Sbjct: 182 AGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEE 240
Query: 230 TKDLFNDPK 238
K++ +DPK
Sbjct: 241 IKNVLSDPK 249
Score = 73.6 bits (179), Expect = 5e-14
Identities = 62/227 (27%), Positives = 109/227 (47%), Gaps = 16/227 (7%)
Query: 291 VNFSLKAKENIGIIGESGSGKSSLALGLLKLALNSGEEKILGQSVGSLNSKAFKPYRKIL 350
V+ S+ + IIG +GSGKS+L + ++ L + E ++ ++ N + + Y +
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTL-INVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 351 QMVFQDPYASLNPRLSIQSILTEALRFAYPKAS---------KEEWHHLAKLCLEEVCLS 401
FQ P + ++ E P S +EE A LE + LS
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 144
Query: 402 HELLNSYAYELSGGERQRVAIARAIALKPKIILLDEPTSALDKSIQKSVLELLLDLQEKQ 461
H L + A ELSGG+ + V I RA+ PK+I++DEP + + + + +L+L+ K
Sbjct: 145 H-LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK- 202
Query: 462 DLSYLFISHDLDVIKAFCDKVLVISEGKVVE----MNTIKEVFDNPK 504
+++L I H LD++ + D + V+ G+++ IK V +PK
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPK 249
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 79.3 bits (194), Expect = 9e-16
Identities = 65/249 (26%), Positives = 112/249 (44%), Gaps = 17/249 (6%)
Query: 1 MLEIKNLNCVLNAHFSLQNINISLNPSERVAIVGESGSGKSSIANIIMRLNPRFKPHNGE 60
+L +N+ +L ++IS+N + I+G +GSGKS++ N+I K G
Sbjct: 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF---LKADEGR 63
Query: 61 VLFETTNLLKESEEFMQHLRGNAIAYIAQDPLSSLNPLH-----KIGKQMSEAYFLHYKN 115
V FE ++ + + H G + PL + L +I S L YK
Sbjct: 64 VYFENKDITNKEPAELYHY-GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKK 122
Query: 116 --ASKTLLKEQVLNAMKQVQLDEKFLDRYPYELSGGQRQRVCIAMGIINAPKLLICDEPT 173
+ + E+ ++ ++L + DR ELSGGQ + V I ++ PK+++ D+P
Sbjct: 123 WIPKEEEMVEKAFKILEFLKLSHLY-DRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPI 181
Query: 174 TALDAQIQNQILDLPKQLSAEKNIALLFISHDLKAVKRLADRVYVLKKGEIVETNL---- 229
+ + + I + +L A K I L I H L V D +YV+ G+I+
Sbjct: 182 AGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEE 240
Query: 230 TKDLFNDPK 238
K++ +DPK
Sbjct: 241 IKNVLSDPK 249
Score = 72.8 bits (177), Expect = 9e-14
Identities = 62/228 (27%), Positives = 112/228 (48%), Gaps = 18/228 (7%)
Query: 291 VNFSLKAKENIGIIGESGSGKSSLALGLLKLALNSGEEKILGQSVGSLNSKAFKPYRKIL 350
V+ S+ + IIG +GSGKS+L + ++ L + E ++ ++ N + + Y +
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTL-INVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 351 QMVFQDPYASLNPRLSIQSILTEALR--------FAYPK--ASKEEWHHLAKLCLEEVCL 400
FQ P L ++++L + Y K +EE A LE + L
Sbjct: 85 VRTFQTPQP-LKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL 143
Query: 401 SHELLNSYAYELSGGERQRVAIARAIALKPKIILLDEPTSALDKSIQKSVLELLLDLQEK 460
SH L + A ELSGG+ + V I RA+ PK+I++D+P + + + + +L+L+ K
Sbjct: 144 SH-LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAK 202
Query: 461 QDLSYLFISHDLDVIKAFCDKVLVISEGKVVE----MNTIKEVFDNPK 504
+++L I H LD++ + D + V+ G+++ IK V +PK
Sbjct: 203 -GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPK 249
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 78.2 bits (191), Expect = 2e-15
Identities = 63/219 (28%), Positives = 106/219 (47%), Gaps = 26/219 (11%)
Query: 17 LQNINISLNPSERVAIVGESGSGKSSIANIIMRLNPRFKPHNGEVLFETTNLLKESEEFM 76
LQ + +L P E A+VG +GSGKS++A ++ L ++P G++L + L + ++
Sbjct: 33 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL---YQPTGGQLLLDGKPLPQYEHRYL 89
Query: 77 QHLRGNAIAYIAQDPLSSLNPLHKIGKQMSEAYFLHYKNASKTLLKEQVLNAMKQ----- 131
+A + Q+P G+ + E + Y K ++E A+K
Sbjct: 90 HR----QVAAVGQEP-------QVFGRSLQEN--IAYGLTQKPTMEEITAAAVKSGAHSF 136
Query: 132 ----VQLDEKFLDRYPYELSGGQRQRVCIAMGIINAPKLLICDEPTTALDAQIQNQILDL 187
Q + +D +LSGGQRQ V +A +I P +LI D+ T+ALDA Q Q+ L
Sbjct: 137 ISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQL 196
Query: 188 PKQLSAEKNIALLFISHDLKAVKRLADRVYVLKKGEIVE 226
+ + ++L I+ L V++ AD + L+ G I E
Sbjct: 197 LYESPERYSRSVLLITQHLSLVEQ-ADHILFLEGGAIRE 234
Score = 69.3 bits (168), Expect = 1e-12
Identities = 65/244 (26%), Positives = 114/244 (46%), Gaps = 15/244 (6%)
Query: 261 ETLLEVKDFSVYYLQKRFFRPSLKKPLIASVNFSLKAKENIGIIGESGSGKSSLALGLLK 320
E L++ +D S Y RP + ++ + F+L+ E ++G +GSGKS++A L
Sbjct: 12 EGLVQFQDVSFAYPN----RPDVL--VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 65
Query: 321 LALNSGEEKILGQSVGSLNSKAFKPYRKILQMVFQDPYA---SLNPRLSIQSILTEALRF 377
L +G + +L L + + + V Q+P SL ++ +
Sbjct: 66 LYQPTGGQLLLDGK--PLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE 123
Query: 378 AYPKASKEEWHHLAKLCLEEVCLSHELLNSYAYELSGGERQRVAIARAIALKPKIILLDE 437
A K H + + S +LSGG+RQ VA+ARA+ KP +++LD+
Sbjct: 124 ITAAAVKSGAHSFISGLPQGYDTEVDEAGS---QLSGGQRQAVALARALIRKPCVLILDD 180
Query: 438 PTSALDKSIQKSVLELLLDLQEKQDLSYLFISHDLDVIKAFCDKVLVISEGKVVEMNTIK 497
TSALD + Q V +LL + E+ S L I+ L +++ D +L + G + E T +
Sbjct: 181 ATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHILFLEGGAIREGGTHQ 239
Query: 498 EVFD 501
++ +
Sbjct: 240 QLME 243
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 55.8 bits (133), Expect = 1e-08
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 111 LHYKNASKTLLKEQVLNAMKQVQLDEKFLDRYPYELSGGQRQRVCIAMGIIN-------A 163
LH + ++T L V A+ LD+K L R +LSGG+ QRV +A ++ A
Sbjct: 96 LHQHDKTRTELLNDVAGALA---LDDK-LGRSTNQLSGGEWQRVRLAAVVLQITPQANPA 151
Query: 164 PKLLICDEPTTALDAQIQNQILDLPKQLSAEKNIALLFISHDLKAVKRLADRVYVLKKGE 223
+LL+ DEP +LD Q LD ++ +A++ SHDL R A R ++LK G+
Sbjct: 152 GQLLLLDEPXNSLDV-AQQSALDKILSALCQQGLAIVXSSHDLNHTLRHAHRAWLLKGGK 210
Query: 224 IVETNLTKDLFNDP 237
+ + +++ P
Sbjct: 211 XLASGRREEVLTPP 224
Score = 53.5 bits (127), Expect = 5e-08
Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 23/220 (10%)
Query: 295 LKAKENIGIIGESGSGKSSLALGLLKLALNSGEEKILGQSVGSLNSKAFKPYRKILQMVF 354
++A E + ++G +G+GKS+L G + GQ + + ++ +R L
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQ 82
Query: 355 QDPYASLNPRLSIQSILTEALRFAYPKASKEEWHHLA-KLCLEEVCLSHELLNSYAYELS 413
P+A+ + LT + K E + +A L L+ + L +LS
Sbjct: 83 TPPFAT-----PVWHYLT---LHQHDKTRTELLNDVAGALALD------DKLGRSTNQLS 128
Query: 414 GGERQRVAIARAI-ALKP------KIILLDEPTSALDKSIQKSVLELLLDLQEKQDLSYL 466
GGE QRV +A + + P +++LLDEP ++LD + Q+S L+ +L +Q L+ +
Sbjct: 129 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVA-QQSALDKILSALCQQGLAIV 187
Query: 467 FISHDLDVIKAFCDKVLVISEGKVVEMNTIKEVFDNPKHA 506
SHDL+ + ++ GK + +EV P A
Sbjct: 188 XSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLA 227
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 55.5 bits (132), Expect = 1e-08
Identities = 49/236 (20%), Positives = 111/236 (46%), Gaps = 12/236 (5%)
Query: 1 MLEIKNLNCVLNAHFSLQNINISLNPSERVAIVGESGSGKSSIANIIMRLNPRFKPHNGE 60
+LE+++L+ A +++ I++ + + V ++G +G+GK++ + I L + G+
Sbjct: 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL---VRAQKGK 62
Query: 61 VLFETTNLLKESEEFMQHLRGNAIAYIAQDPLSSLNPLHKIGKQMSEAYFLHYKNASKTL 120
++F ++ + + IA + + + P + + + Y K
Sbjct: 63 IIFNGQDITNKPAHVINRX---GIALVPEG--RRIFPELTVYENLXXGA---YNRKDKEG 114
Query: 121 LKEQVLNAMKQVQLDEKFLDRYPYELSGGQRQRVCIAMGIINAPKLLICDEPTTALDAQI 180
+K + ++ L + LSGG++Q + I + + PKLL DEP+ L +
Sbjct: 115 IKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPIL 174
Query: 181 QNQILDLPKQLSAEKNIALLFISHDLKAVKRLADRVYVLKKGEIVETNLTKDLFND 236
+++ ++ ++++ E LL + L A+K +A YVL+ G+IV +L ++
Sbjct: 175 VSEVFEVIQKINQEGTTILLVEQNALGALK-VAHYGYVLETGQIVLEGKASELLDN 229
Score = 51.6 bits (122), Expect = 2e-07
Identities = 55/244 (22%), Positives = 101/244 (40%), Gaps = 16/244 (6%)
Query: 259 LDETLLEVKDFSVYYLQKRFFRPSLKKPLIASVNFSLKAKENIGIIGESGSGKSSLALGL 318
+ + +LEV+ VYY I ++ + + + +IG +G+GK++ +
Sbjct: 2 VSDIVLEVQSLHVYYGAIH---------AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAI 52
Query: 319 LKLALNSGEEKILGQSVGSLNSKAFKPYRKILQMVFQDPYASLNPRLSIQSILTEALRFA 378
L + + + KI+ N A R + +V + + P L++ L A
Sbjct: 53 AGL-VRAQKGKIIFNGQDITNKPAHVINRXGIALVPEG--RRIFPELTVYENLXXG---A 106
Query: 379 YPKASKEEWHHLAKLCLEEVCLSHELLNSYAYELSGGERQRVAIARAIALKPKIILLDEP 438
Y + KE + E L LSGGE+Q +AI RA+ +PK++ DEP
Sbjct: 107 YNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEP 166
Query: 439 TSALDKSIQKSVLELLLDLQEKQDLSYLFISHDLDVIKAFCDKVLVISEGKVVEMNTIKE 498
+ L + V E++ + ++ L + L +K V+ G++V E
Sbjct: 167 SLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKV-AHYGYVLETGQIVLEGKASE 225
Query: 499 VFDN 502
+ DN
Sbjct: 226 LLDN 229
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 34.7 bits (78), Expect = 0.026
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 412 LSGGERQRVAIARAIAL------KPKIILLDEPTSALDKSIQKSVLELLLDLQEKQDLSY 465
LSGGER + +A +A+ + +++LDEPT LD+ ++ ++ +++ K+
Sbjct: 84 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQV 142
Query: 466 LFISHDLDVIKAFCDKVLVIS 486
+ +SHD + +K D V+ IS
Sbjct: 143 ILVSHD-EELKDAADHVIRIS 162
Score = 32.0 bits (71), Expect = 0.17
Identities = 23/77 (29%), Positives = 43/77 (54%), Gaps = 8/77 (10%)
Query: 146 LSGGQRQ------RVCIAMGIINAPKLLICDEPTTALDAQIQNQILDLPKQLSAEKNIAL 199
LSGG+R R+ +++ + LLI DEPT LD + + +++ + ++ +K +
Sbjct: 84 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-LKKIPQV 142
Query: 200 LFISHDLKAVKRLADRV 216
+ +SHD + +K AD V
Sbjct: 143 ILVSHD-EELKDAADHV 158
>pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2T|B Chain B, Crystal Structure Of Atp-Free Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 34.7 bits (78), Expect = 0.026
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 412 LSGGERQRVAIARAIAL------KPKIILLDEPTSALDKSIQKSVLELLLDLQEKQDLSY 465
LSGGER + +A +A+ + +++LDEPT LD+ ++ ++ +++ K+
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQV 116
Query: 466 LFISHDLDVIKAFCDKVLVIS 486
+ +SHD + +K D V+ IS
Sbjct: 117 ILVSHD-EELKDAADHVIRIS 136
Score = 32.0 bits (71), Expect = 0.17
Identities = 23/77 (29%), Positives = 43/77 (54%), Gaps = 8/77 (10%)
Query: 146 LSGGQRQ------RVCIAMGIINAPKLLICDEPTTALDAQIQNQILDLPKQLSAEKNIAL 199
LSGG+R R+ +++ + LLI DEPT LD + + +++ + ++ +K +
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-LKKIPQV 116
Query: 200 LFISHDLKAVKRLADRV 216
+ +SHD + +K AD V
Sbjct: 117 ILVSHD-EELKDAADHV 132
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 32.0 bits (71), Expect = 0.17
Identities = 34/176 (19%), Positives = 74/176 (41%), Gaps = 17/176 (9%)
Query: 16 SLQNINISLNPSERVAIVGESGSGKSSIANIIMRLNPRFKPHNGEVLFETTNLLKESEEF 75
+L+N+ NP + I G G+GK+ +++ K V++ + + ++
Sbjct: 29 ALENLGSLYNP---IFIYGSVGTGKT---HLLQAAGNEAKKRGYRVIYSSADDFAQAX-- 80
Query: 76 MQHLRGNAI-----AYIAQDPLSSLNPLHKIGKQMSEAYFLHYKNASKTLLKEQVLNAMK 130
++HL+ I Y + D L + GK+ ++ F H N L K+ +L + +
Sbjct: 81 VEHLKKGTINEFRNXYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140
Query: 131 QVQLDEKFLDRYPYELSGGQRQRVCIAMGIINAPKLLICDEPTTALDAQIQNQILD 186
Q + DR GG + + + + N + I E + +++ +++D
Sbjct: 141 HPQKLDGVSDRLVSRFEGG----ILVEIELDNKTRFKIIKEKLKEFNLELRKEVID 192
>pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
pdb|1EKU|A Chain A, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
Length = 265
Score = 32.0 bits (71), Expect = 0.17
Identities = 38/162 (23%), Positives = 65/162 (39%), Gaps = 14/162 (8%)
Query: 189 KQLSAEKNIALLFISHDLKAVKRLADRVYVLKKGEIVETNLTKDLFNDPKH---EYSKLL 245
K+ S K + +S K K D + K E ++ ++ FN K ++ KL
Sbjct: 38 KEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLT 97
Query: 246 IQASNLPAKNLKALDETLLEVKDFSVYYLQKRFFRPSLKKPLIASVNFSLKAKENIGIIG 305
+ KA+DE + + +FS Q+ P + +LK N G
Sbjct: 98 NYSVTDLNVQRKAIDELIQVMAEFSTEEQQEG--------PYVKEAE-NLKKYFNAGHSD 148
Query: 306 ESGSGKSSLALGLLKLALNSGEEKILGQSVGSLNSKAFKPYR 347
+ +G +L LG+LK + KI+ + S K FK ++
Sbjct: 149 VADNG--TLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFK 188
>pdb|2FHA| Human H Chain Ferritin
pdb|1FHA| Ferritin (H-Chain) Mutant (Lys 86 Replaced By Gln) (K86q)
Length = 183
Score = 29.6 bits (65), Expect = 0.85
Identities = 20/67 (29%), Positives = 35/67 (51%), Gaps = 8/67 (11%)
Query: 176 LDAQIQNQILDLPKQLSAEKN-------IALLFISHDLKAVKRLADRVYVLKKGEIVETN 228
L+ + +L+L K L+ +KN I +++ +KA+K L D V L+K E+
Sbjct: 107 LEKNVNQSLLELHK-LATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESG 165
Query: 229 LTKDLFN 235
L + LF+
Sbjct: 166 LAEYLFD 172
>pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
Length = 444
Score = 29.3 bits (64), Expect = 1.1
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 252 PAKNLKALDETLL---EVKDFSVYYLQKRFFRPSLKKPLIASVNFSLKAKENIGIIGESG 308
P + + LD+ ++ + K L+ R+ R L++PL V +NI +IG +G
Sbjct: 6 PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVT-----PKNILMIGPTG 60
Query: 309 SGKSSLALGLLKLA 322
GK+ +A L KLA
Sbjct: 61 VGKTEIARRLAKLA 74
>pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bond Conformation Of
Phoq Kinase Domain
Length = 152
Score = 29.3 bits (64), Expect = 1.1
Identities = 13/44 (29%), Positives = 23/44 (51%)
Query: 4 IKNLNCVLNAHFSLQNINISLNPSERVAIVGESGSGKSSIANII 47
+ NL LN + + +NISL+ S ++ VGE + N++
Sbjct: 10 LDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVL 53
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 28.5 bits (62), Expect = 1.9
Identities = 23/74 (31%), Positives = 37/74 (49%), Gaps = 8/74 (10%)
Query: 252 PAKNLKALDETLL---EVKDFSVYYLQKRFFRPSLKKPLIASVNFSLKAKENIGIIGESG 308
P + + LD+ ++ + K L+ R+ R L++PL V +NI IG +G
Sbjct: 6 PREIVSELDQHIIGQADAKRAVAIALRNRWRRXQLQEPLRHEVT-----PKNILXIGPTG 60
Query: 309 SGKSSLALGLLKLA 322
GK+ +A L KLA
Sbjct: 61 VGKTEIARRLAKLA 74
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
Length = 758
Score = 28.1 bits (61), Expect = 2.5
Identities = 53/225 (23%), Positives = 95/225 (41%), Gaps = 21/225 (9%)
Query: 275 QKRFFRPSLKKPLIASVNFSLKAKENIGIIGE-SGSGKSSLALGLLKLALNSGEEKILGQ 333
+KRF +L K L N L E IIG + SG A L+K L+SG+ +++G
Sbjct: 264 EKRF--KALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGS 321
Query: 334 SVGSLNSKAFKPYRKILQMVFQDPYASLNPRLSI-QSILTEALRFAYPKASKEEWHHLAK 392
+ S F+ R + + FQ ++ I + + E ++ K E HH +
Sbjct: 322 TTYQEFSNIFEKDRALARR-FQ--------KIDITEPSIEETVQIINGLKPKYEAHHDVR 372
Query: 393 LCLEEVCLSHELLNSYAYELSGGERQRVAIARAIALKPKIILLDEPTSALDKSIQKSVLE 452
+ V + EL Y + ++ I A A + +++ + + ++ + +SV+
Sbjct: 373 YTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGA-RARLMPVSKRKKTVNVADIESVVA 431
Query: 453 LLLDLQEKQDLSYLFISHDLDVIKAFCD--KVLVISEGKVVEMNT 495
+ + EK D D +K D K+LV + K +E T
Sbjct: 432 RIARIPEKS-----VSQSDRDTLKNLGDRLKMLVFGQDKAIEALT 471
>pdb|1HM6|A Chain A, X-Ray Structure Of Full-Length Annexin 1
pdb|1HM6|B Chain B, X-Ray Structure Of Full-Length Annexin 1
Length = 346
Score = 27.3 bits (59), Expect = 4.2
Identities = 43/216 (19%), Positives = 85/216 (38%), Gaps = 29/216 (13%)
Query: 71 ESEEFMQHLRGN-------AIAYIAQDPLSSLNPLHKI--GKQMSEAYFLHYKNASKTLL 121
E +E+++ ++G+ Y +P S + LHK K + EA +
Sbjct: 17 EEQEYIKTVKGSKGGPGSAVSPYPTFNPSSDVEALHKAITVKGVDEATIIEILTKRTNAQ 76
Query: 122 KEQVLNAMKQVQLDEKFLDRYPYELSGGQRQRVCIAMGIINAPKLLICDEPTTALDAQIQ 181
++Q+ A Q + K LD + G + V +A+ + P DE A+
Sbjct: 77 RQQIKAAYLQEK--GKPLDEALKKALTGHLEEVALAL--LKTPAQFDADELRAAM----- 127
Query: 182 NQILDLPKQLSAEKNIALLFISHDLKAVKRLADRVYVLKKGEIVETNLTKDLFNDPKHEY 241
K L +++ ++ R +RVY E ++ +L KD+ +D +Y
Sbjct: 128 -------KGLGTDEDTLNEILASRTNREIREINRVYK----EELKRDLAKDITSDTSGDY 176
Query: 242 SKLLIQASNLPAKNLKALDETLLEVKDFSVYYLQKR 277
K L+ + A+++ L + ++Y +R
Sbjct: 177 QKALLSLAKGDRSEDLAINDDLADTDARALYEAGER 212
>pdb|1IMV|A Chain A, 2.85 A Crystal Structure Of Pedf
Length = 398
Score = 26.9 bits (58), Expect = 5.5
Identities = 29/102 (28%), Positives = 42/102 (40%), Gaps = 10/102 (9%)
Query: 172 PTTALDAQIQNQILDLPK---QLSAEKNIAL--LFISHDLKAVKRLADRVYVLKKGEIVE 226
P L A + N DL + +S N+ L L ++ L A+ AD + I+
Sbjct: 30 PVNKLAAAVSNFGYDLYRVRSSMSPTTNVLLSPLSVATALSALSLGADE----RTESIIH 85
Query: 227 TNLTKDLFNDPK-HEYSKLLIQASNLPAKNLKALDETLLEVK 267
L DL + P H K L+ P KNLK+ + E K
Sbjct: 86 RALYYDLISSPDIHGTYKELLDTVTAPQKNLKSASRIVFEKK 127
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 26.2 bits (56), Expect = 9.4
Identities = 18/49 (36%), Positives = 29/49 (58%), Gaps = 3/49 (6%)
Query: 296 KAKENIGIIGESGSGKSSLALGLLKLALNSGE--EKILGQSVGSLNSKA 342
+ K N +IGE G GK+++ GL + +N GE E + G+ V +L+ A
Sbjct: 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIIN-GEVPEGLKGRRVLALDMGA 88
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.135 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,715,704
Number of Sequences: 13198
Number of extensions: 106355
Number of successful extensions: 465
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 41
length of query: 516
length of database: 2,899,336
effective HSP length: 92
effective length of query: 424
effective length of database: 1,685,120
effective search space: 714490880
effective search space used: 714490880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)