BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644883|ref|NP_207053.1| adenylosuccinate synthetase
(purA) [Helicobacter pylori 26695]
(411 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Mu... 340 2e-94
pdb|1KKF|A Chain A, Complex Of E. Coli Adenylosuccinate Syn... 338 7e-94
pdb|1ADE|A Chain A, Structure Of Adenylosuccinate Synthetas... 338 7e-94
pdb|1DJ3|A Chain A, Structures Of Adenylosuccinate Syntheta... 337 1e-93
pdb|1CG1|A Chain A, Structure Of The Mutant (K16q) Of Adeny... 337 2e-93
pdb|1CG3|A Chain A, Structure Of The Mutant (R143l) Of Aden... 335 4e-93
pdb|1CG4|A Chain A, Structure Of The Mutant (R303l) Of Aden... 335 4e-93
pdb|1DJ2|A Chain A, Structures Of Adenylosuccinate Syntheta... 334 1e-92
pdb|1GGJ|A Chain A, Crystal Structure Of Catalase Hpii From... 26 7.2
pdb|1GGH|A Chain A, Crystal Structure Of Catalase Hpii From... 26 7.2
pdb|1GG9|A Chain A, Crystal Structure Of Catalase Hpii From... 26 7.2
pdb|1GGE|A Chain A, Crystal Structure Of Catalase Hpii From... 26 7.2
pdb|1GGK|A Chain A, Crystal Structure Of Catalase Hpii From... 26 7.2
pdb|1CF9|A Chain A, Structure Of The Mutant Val169cys Of Ca... 26 7.2
pdb|1QF7|A Chain A, Structure Of The Mutant His392gln Of Ca... 26 7.2
pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrat... 26 7.2
pdb|2RMC|A Chain A, Cyclophilin C Complexed With Cyclospori... 26 9.4
>pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1IWE|B Chain B, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1LNY|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LNY|B Chain B, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LON|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Hadacidin
pdb|1LOO|A Chain A, Crystal Structure Of The Mouse-Muscle Adenylosuccinate
Synthetase Ligated With Gtp
pdb|1MEZ|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Samp, Gdp, So4(2-), And Mg(2+)
pdb|1MF0|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp, Gdp, Hpo4(2-), And Mg(2+)
pdb|1MF1|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp
pdb|1J4B|A Chain A, Recombinant Mouse-Muscle Adenylosuccinate Synthetase
Length = 457
Score = 340 bits (872), Expect = 2e-94
Identities = 186/427 (43%), Positives = 260/427 (60%), Gaps = 24/427 (5%)
Query: 4 VVVGIQWGDEGKGKIVDRIAKDYDFVVRYQGGHNAGHTIVHKGVKHSLHLMPSGVLYPKC 63
VV+G QWGDEGKGK+VD +A D D V R QGG+NAGHT+V G ++ HL+PSG++ K
Sbjct: 35 VVLGAQWGDEGKGKVVDLLATDADIVSRCQGGNNAGHTVVVDGKEYDFHLLPSGIINTKA 94
Query: 64 KNIISSAVVVSVKDLCEEISAFE-----DLENRLFVSDRAHVILPYHAKKDAFKE----- 113
+ I + VV+ + L EE E D E RL +SDRAH++ +H D +E
Sbjct: 95 VSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAVDGLQEVQRQA 154
Query: 114 -KSQNIGTTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHFKAIEPFKKAYDLGEN 172
+ +NIGTTKKGIGP Y K AR+G+R+ DLL D ++ +A FK + + +
Sbjct: 155 QEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDF---DEFSARFKNLA--HQHQSMFPT 209
Query: 173 YEKDLMGYFKT---YAPKICPFIKDTTSMLIEA-NQKGEKILLEGAQGTLLDIDLGTYPF 228
E D+ G K +A +I P ++D + EA + +K+L+EGA LLDID GTYPF
Sbjct: 210 LEIDVEGQLKRLKGFAERIRPMVRDGVYFMYEALHGPPKKVLVEGANAALLDIDFGTYPF 269
Query: 229 VTSSNTTSASACVSTGLNPKAINEVIGITKAYSTRVGNGPFPSEDTTPMGDHLRTKGAEF 288
VTSSN T C G+ P+ I +V G+ KAY+TRVG G FP+E +GD L+ +G E+
Sbjct: 270 VTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAYTTRVGIGAFPTEQINEIGDLLQNRGHEW 329
Query: 289 GTTTKRPRRCGWLDLVALKYACALNGCTQLALMKLDVLDGIDAIKVCVAYERKGERLEIF 348
G TT R RRCGWLDL+ L+YA +NG T LAL KLD+LD + IKV ++Y+ G+R+ F
Sbjct: 330 GVTTGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILDVLSEIKVGISYKLNGKRIPYF 389
Query: 349 PSD---LKDCVPIYQTFKGWE-KSVGVRKLDDLEPNVREYIRFIEKEVGVKIRLISTSPE 404
P++ L+ Y+T GW+ + G RK +DL P + Y+RF+E +GV ++ +
Sbjct: 390 PANQEILQKVEVEYETLPGWKADTTGARKWEDLPPQAQSYVRFVENHMGVAVKWVGVGKS 449
Query: 405 REDTIFL 411
RE I L
Sbjct: 450 RESMIQL 456
>pdb|1KKF|A Chain A, Complex Of E. Coli Adenylosuccinate Synthetase With Imp,
Hadacidin, Pyrophosphate, And Mg
pdb|1KKB|A Chain A, Complex Of Escherichia Coli Adenylosuccinate Synthetase
With Imp And Hadacidin
pdb|1KJX|A Chain A, Imp Complex Of E. Coli Adenylosuccinate Synthetase
Length = 432
Score = 338 bits (867), Expect = 7e-94
Identities = 192/426 (45%), Positives = 258/426 (60%), Gaps = 23/426 (5%)
Query: 4 VVVGIQWGDEGKGKIVDRIAKDYDFVVRYQGGHNAGHTIVHKGVKHSLHLMPSGVLYPKC 63
VV+G QWGDEGKGKIVD + + +VVRYQGGHNAGHT+V G K LHL+PSG+L
Sbjct: 6 VVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENV 65
Query: 64 KNIISSAVVVSVKDLCEEISAFED----LENRLFVSDRAHVILPYHAKKDAFKEKSQN-- 117
+II + VV+S L +E+ ED + RL +S+ +IL YH D +EK++
Sbjct: 66 TSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAK 125
Query: 118 -IGTTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHFKAIEPFKKAYDLGENYEKD 176
IGTT +GIGP YEDK+AR G+R+GDL D + EKL K + + + L Y+ +
Sbjct: 126 AIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKL----KEVMEYHN-FQLVNYYKAE 180
Query: 177 LMGYFKTY------APKICPFIKDTTSMLIEANQKGEKILLEGAQGTLLDIDLGTYPFVT 230
+ Y K A + + D + +L +A Q+G+ ++ EGAQGTLLDID GTYP+VT
Sbjct: 181 AVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVT 240
Query: 231 SSNTTSASACVSTGLNPKAINEVIGITKAYSTRVGNGPFPSEDTTPMGDHLRTKGAEFGT 290
SSNTT+ +GL P+ ++ V+GI KAYSTRVG GPFP+E G+ L +G EFG
Sbjct: 241 SSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGA 300
Query: 291 TTKRPRRCGWLDLVALKYACALNGCTQLALMKLDVLDGIDAIKVCVAYE----RKGERLE 346
TT R RR GWLD VA++ A LN + L KLDVLDG+ +K+CVAY R+
Sbjct: 301 TTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTP 360
Query: 347 IFPSDLKDCVPIYQTFKGW-EKSVGVRKLDDLEPNVREYIRFIEKEVGVKIRLISTSPER 405
+ D K PIY+T GW E + GV+ L YI+ IE+ GV I +IST P+R
Sbjct: 361 LAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDR 420
Query: 406 EDTIFL 411
+T+ L
Sbjct: 421 TETMIL 426
>pdb|1ADE|A Chain A, Structure Of Adenylosuccinate Synthetase Ph7 At 25 Degrees
Celsius
pdb|1ADE|B Chain B, Structure Of Adenylosuccinate Synthetase Ph7 At 25 Degrees
Celsius
pdb|1QF5|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1QF4|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1HOO|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph6.5 And 25
Degrees Celsius
pdb|1HOO|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph6.5 And 25
Degrees Celsius
pdb|1HOP|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At
Ph6.5 And 25 Degrees Celsius
pdb|1HOP|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At
Ph6.5 And 25 Degrees Celsius
pdb|1HON|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At
Ph6.5 And 25 Degree Celsius
pdb|1HON|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At
Ph6.5 And 25 Degree Celsius
pdb|1CIB|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Gdp, Imp, Hadacidin, And No3
pdb|1ADI|A Chain A, Structure Of Adenylosuccinate Synthetase At Ph6.5 And 25
Degrees Celsius
pdb|1ADI|B Chain B, Structure Of Adenylosuccinate Synthetase At Ph6.5 And 25
Degrees Celsius
pdb|1CH8|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With A Stringent Effector, Ppg2':3'p
pdb|1GIM| Crystal Structure Of Adenylosuccinate Synthetase From Escherichia
Coli Complexed With Gdp, Imp, Hadacidin, No3-, And Mg2+.
Data Collected At 100k (Ph6.5)
pdb|1CG0|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Hadacidin, Gdp, 6-Phosphoryl-Imp, And
Mg2+
pdb|1NHT| Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli Data Collected At 100k
pdb|1SON| Adenylosuccinate Synthetase In Complex With The Natural Feedback
Inhibitor Amp
pdb|1SOO| Adenylosuccinate Synthetase Inhibited By Hydantocidin
5'-Monophosphate
pdb|1JUY| Refined Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Hydantocidin
5'-Phosphate Gdp, Hpo4(2-), Mg2+, And Hadacidin
pdb|1GIN| Crystal Structure Of Adenylosuccinate Synthetase From Escherichia
Coli Complexed With Gdp, Imp, Hadacidin, No3-, And Mg2+.
Data Collected At 298k (Ph6.5).
pdb|1KSZ| Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli, Data Collected At 298k
Length = 431
Score = 338 bits (867), Expect = 7e-94
Identities = 192/426 (45%), Positives = 258/426 (60%), Gaps = 23/426 (5%)
Query: 4 VVVGIQWGDEGKGKIVDRIAKDYDFVVRYQGGHNAGHTIVHKGVKHSLHLMPSGVLYPKC 63
VV+G QWGDEGKGKIVD + + +VVRYQGGHNAGHT+V G K LHL+PSG+L
Sbjct: 5 VVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENV 64
Query: 64 KNIISSAVVVSVKDLCEEISAFED----LENRLFVSDRAHVILPYHAKKDAFKEKSQN-- 117
+II + VV+S L +E+ ED + RL +S+ +IL YH D +EK++
Sbjct: 65 TSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAK 124
Query: 118 -IGTTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHFKAIEPFKKAYDLGENYEKD 176
IGTT +GIGP YEDK+AR G+R+GDL D + EKL K + + + L Y+ +
Sbjct: 125 AIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKL----KEVMEYHN-FQLVNYYKAE 179
Query: 177 LMGYFKTY------APKICPFIKDTTSMLIEANQKGEKILLEGAQGTLLDIDLGTYPFVT 230
+ Y K A + + D + +L +A Q+G+ ++ EGAQGTLLDID GTYP+VT
Sbjct: 180 AVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVT 239
Query: 231 SSNTTSASACVSTGLNPKAINEVIGITKAYSTRVGNGPFPSEDTTPMGDHLRTKGAEFGT 290
SSNTT+ +GL P+ ++ V+GI KAYSTRVG GPFP+E G+ L +G EFG
Sbjct: 240 SSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGA 299
Query: 291 TTKRPRRCGWLDLVALKYACALNGCTQLALMKLDVLDGIDAIKVCVAYE----RKGERLE 346
TT R RR GWLD VA++ A LN + L KLDVLDG+ +K+CVAY R+
Sbjct: 300 TTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTP 359
Query: 347 IFPSDLKDCVPIYQTFKGW-EKSVGVRKLDDLEPNVREYIRFIEKEVGVKIRLISTSPER 405
+ D K PIY+T GW E + GV+ L YI+ IE+ GV I +IST P+R
Sbjct: 360 LAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDR 419
Query: 406 EDTIFL 411
+T+ L
Sbjct: 420 TETMIL 425
>pdb|1DJ3|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ3|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 442
Score = 337 bits (864), Expect = 1e-93
Identities = 180/419 (42%), Positives = 255/419 (59%), Gaps = 13/419 (3%)
Query: 5 VVGIQWGDEGKGKIVDRIAKDYDFVVRYQGGHNAGHTIVH-KGVKHSLHLMPSGVLYPKC 63
V+G QWGDEGKGK+VD +A +D V R QGG NAGHTI + +G K +LHL+PSG+L+
Sbjct: 23 VLGSQWGDEGKGKLVDVLAPRFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILHEGT 82
Query: 64 KNIISSAVVVSVKDLCEEISAFED----LENRLFVSDRAHVILPYHAKKDAFKEK---SQ 116
++ + V+ V EI + + R+ VSDRAH++ H D +E +
Sbjct: 83 LCVVGNGAVIHVPGFFGEIDGLQSNGVSCDGRILVSDRAHLLFDLHQTVDGLREAELANS 142
Query: 117 NIGTTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHFKAIEPFKKAYDLGENYEKD 176
IGTTK+GIGPCY K+ R+G+R+ DL +KL+ F+ + + + K+
Sbjct: 143 FIGTTKRGIGPCYSSKVTRNGLRVCDLRHMDTFGDKLDVLFEDAAARFEGFKYSKGMLKE 202
Query: 177 LMGYFKTYAPKICPFIKDTTSMLIEANQKGEKILLEGAQGTLLDIDLGTYPFVTSSNTTS 236
+ +K +A ++ PFI DT +L E+ ++ +KIL+EG Q T+LDID GTYPFVTSS+ ++
Sbjct: 203 EVERYKKFAERLEPFIADTVHVLNESIRQKKKILVEGGQATMLDIDFGTYPFVTSSSPSA 262
Query: 237 ASACVSTGLNPKAINEVIGITKAYSTRVGNGPFPSEDTTPMGDHLRTKGAEFGTTTKRPR 296
C G+ P+ I ++IG+ KAY+TRVG+GPFP+E GD LR G EFGTTT RPR
Sbjct: 263 GGICTGLGIAPRVIGDLIGVVKAYTTRVGSGPFPTELLGEEGDVLRKAGMEFGTTTGRPR 322
Query: 297 RCGWLDLVALKYACALNGCTQLALMKLDVLDGIDAIKVCVAY-ERKGERLEIFPSDLKDC 355
RCGWLD+VALKY C +NG + L L KLDVL G+ IK+ V+Y + GE+L+ FP DL
Sbjct: 323 RCGWLDIVALKYCCDINGFSSLNLTKLDVLSGLPEIKLGVSYNQMDGEKLQSFPGDLDTL 382
Query: 356 VPI---YQTFKGWEKSV-GVRKLDDLEPNVREYIRFIEKEVGVKIRLISTSPEREDTIF 410
+ Y+ GW+ + VR +L R Y+ IE+ GV + I P R+ I+
Sbjct: 383 EQVQVNYEVLPGWDSDISSVRSYSELPQAARRYVERIEELAGVPVHYIGVGPGRDALIY 441
>pdb|1CG1|A Chain A, Structure Of The Mutant (K16q) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6- Phosphoryl-Imp, And Mg2+
Length = 431
Score = 337 bits (863), Expect = 2e-93
Identities = 191/426 (44%), Positives = 258/426 (59%), Gaps = 23/426 (5%)
Query: 4 VVVGIQWGDEGKGKIVDRIAKDYDFVVRYQGGHNAGHTIVHKGVKHSLHLMPSGVLYPKC 63
VV+G QWGDEG+GKIVD + + +VVRYQGGHNAGHT+V G K LHL+PSG+L
Sbjct: 5 VVLGTQWGDEGQGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENV 64
Query: 64 KNIISSAVVVSVKDLCEEISAFED----LENRLFVSDRAHVILPYHAKKDAFKEKSQN-- 117
+II + VV+S L +E+ ED + RL +S+ +IL YH D +EK++
Sbjct: 65 TSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAK 124
Query: 118 -IGTTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHFKAIEPFKKAYDLGENYEKD 176
IGTT +GIGP YEDK+AR G+R+GDL D + EKL K + + + L Y+ +
Sbjct: 125 AIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKL----KEVMEYHN-FQLVNYYKAE 179
Query: 177 LMGYFKTY------APKICPFIKDTTSMLIEANQKGEKILLEGAQGTLLDIDLGTYPFVT 230
+ Y K A + + D + +L +A Q+G+ ++ EGAQGTLLDID GTYP+VT
Sbjct: 180 AVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVT 239
Query: 231 SSNTTSASACVSTGLNPKAINEVIGITKAYSTRVGNGPFPSEDTTPMGDHLRTKGAEFGT 290
SSNTT+ +GL P+ ++ V+GI KAYSTRVG GPFP+E G+ L +G EFG
Sbjct: 240 SSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGA 299
Query: 291 TTKRPRRCGWLDLVALKYACALNGCTQLALMKLDVLDGIDAIKVCVAYE----RKGERLE 346
TT R RR GWLD VA++ A LN + L KLDVLDG+ +K+CVAY R+
Sbjct: 300 TTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTP 359
Query: 347 IFPSDLKDCVPIYQTFKGW-EKSVGVRKLDDLEPNVREYIRFIEKEVGVKIRLISTSPER 405
+ D K PIY+T GW E + GV+ L YI+ IE+ GV I +IST P+R
Sbjct: 360 LAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDR 419
Query: 406 EDTIFL 411
+T+ L
Sbjct: 420 TETMIL 425
>pdb|1CG3|A Chain A, Structure Of The Mutant (R143l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6- Phosphoryl-Imp, And Mg2+
Length = 431
Score = 335 bits (860), Expect = 4e-93
Identities = 191/426 (44%), Positives = 257/426 (59%), Gaps = 23/426 (5%)
Query: 4 VVVGIQWGDEGKGKIVDRIAKDYDFVVRYQGGHNAGHTIVHKGVKHSLHLMPSGVLYPKC 63
VV+G QWGDEGKGKIVD + + +VVRYQGGHNAGHT+V G K LHL+PSG+L
Sbjct: 5 VVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENV 64
Query: 64 KNIISSAVVVSVKDLCEEISAFED----LENRLFVSDRAHVILPYHAKKDAFKEKSQN-- 117
+II + VV+S L +E+ ED + RL +S+ +IL YH D +EK++
Sbjct: 65 TSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAK 124
Query: 118 -IGTTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHFKAIEPFKKAYDLGENYEKD 176
IGTT +GIGP YEDK+A G+R+GDL D + EKL K + + + L Y+ +
Sbjct: 125 AIGTTGRGIGPAYEDKVALRGLRVGDLFDKETFAEKL----KEVMEYHN-FQLVNYYKAE 179
Query: 177 LMGYFKTY------APKICPFIKDTTSMLIEANQKGEKILLEGAQGTLLDIDLGTYPFVT 230
+ Y K A + + D + +L +A Q+G+ ++ EGAQGTLLDID GTYP+VT
Sbjct: 180 AVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVT 239
Query: 231 SSNTTSASACVSTGLNPKAINEVIGITKAYSTRVGNGPFPSEDTTPMGDHLRTKGAEFGT 290
SSNTT+ +GL P+ ++ V+GI KAYSTRVG GPFP+E G+ L +G EFG
Sbjct: 240 SSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGA 299
Query: 291 TTKRPRRCGWLDLVALKYACALNGCTQLALMKLDVLDGIDAIKVCVAYE----RKGERLE 346
TT R RR GWLD VA++ A LN + L KLDVLDG+ +K+CVAY R+
Sbjct: 300 TTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTP 359
Query: 347 IFPSDLKDCVPIYQTFKGW-EKSVGVRKLDDLEPNVREYIRFIEKEVGVKIRLISTSPER 405
+ D K PIY+T GW E + GV+ L YI+ IE+ GV I +IST P+R
Sbjct: 360 LAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDR 419
Query: 406 EDTIFL 411
+T+ L
Sbjct: 420 TETMIL 425
>pdb|1CG4|A Chain A, Structure Of The Mutant (R303l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With, Gdp,
6-Phosphoryl- Imp, And Mg2+
Length = 431
Score = 335 bits (860), Expect = 4e-93
Identities = 191/426 (44%), Positives = 257/426 (59%), Gaps = 23/426 (5%)
Query: 4 VVVGIQWGDEGKGKIVDRIAKDYDFVVRYQGGHNAGHTIVHKGVKHSLHLMPSGVLYPKC 63
VV+G QWGDEGKGKIVD + + +VVRYQGGHNAGHT+V G K LHL+PSG+L
Sbjct: 5 VVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENV 64
Query: 64 KNIISSAVVVSVKDLCEEISAFED----LENRLFVSDRAHVILPYHAKKDAFKEKSQN-- 117
+II + VV+S L +E+ ED + RL +S+ +IL YH D +EK++
Sbjct: 65 TSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAK 124
Query: 118 -IGTTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHFKAIEPFKKAYDLGENYEKD 176
IGTT +GIGP YEDK+AR G+R+GDL D + EKL K + + + L Y+ +
Sbjct: 125 AIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKL----KEVMEYHN-FQLVNYYKAE 179
Query: 177 LMGYFKTY------APKICPFIKDTTSMLIEANQKGEKILLEGAQGTLLDIDLGTYPFVT 230
+ Y K A + + D + +L +A Q+G+ ++ EGAQGTLLDID GTYP+VT
Sbjct: 180 AVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVT 239
Query: 231 SSNTTSASACVSTGLNPKAINEVIGITKAYSTRVGNGPFPSEDTTPMGDHLRTKGAEFGT 290
SSNTT+ +GL P+ ++ V+GI KAYSTRVG GPFP+E G+ L +G EFG
Sbjct: 240 SSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGA 299
Query: 291 TTKRPRRCGWLDLVALKYACALNGCTQLALMKLDVLDGIDAIKVCVAYE----RKGERLE 346
TT RR GWLD VA++ A LN + L KLDVLDG+ +K+CVAY R+
Sbjct: 300 TTGLRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTP 359
Query: 347 IFPSDLKDCVPIYQTFKGW-EKSVGVRKLDDLEPNVREYIRFIEKEVGVKIRLISTSPER 405
+ D K PIY+T GW E + GV+ L YI+ IE+ GV I +IST P+R
Sbjct: 360 LAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDR 419
Query: 406 EDTIFL 411
+T+ L
Sbjct: 420 TETMIL 425
>pdb|1DJ2|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ2|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 443
Score = 334 bits (856), Expect = 1e-92
Identities = 179/419 (42%), Positives = 257/419 (60%), Gaps = 13/419 (3%)
Query: 5 VVGIQWGDEGKGKIVDRIAKDYDFVVRYQGGHNAGHTIVH-KGVKHSLHLMPSGVLYPKC 63
V+G QWGDEGKGK+VD +A+ +D V R QGG NAGHTI + +G K +LHL+PSG+L
Sbjct: 24 VLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILNEDT 83
Query: 64 KNIISSAVVVSVKDLCEEISAFED----LENRLFVSDRAHVILPYHAKKDAFKEKS---Q 116
+I + VVV + L +EI E + R+ VSDRAH++ +H + D +E
Sbjct: 84 TCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILVSDRAHLLFDFHQEVDGLRESELAKS 143
Query: 117 NIGTTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHFKAIEPFKKAYDLGENYEKD 176
IGTTK+GIGP Y K+ R+GIR+GDL L +KL+ + + ++
Sbjct: 144 FIGTTKRGIGPAYSSKVIRNGIRVGDLRHMDTLPQKLDLLLSDAAARFQGFKYTPEMLRE 203
Query: 177 LMGYFKTYAPKICPFIKDTTSMLIEANQKGEKILLEGAQGTLLDIDLGTYPFVTSSNTTS 236
+ +K YA ++ P+I DT + ++ + +K+L+EG Q T+LDID GTYPFVTSS+ ++
Sbjct: 204 EVEAYKRYADRLEPYITDTVHFINDSISQKKKVLVEGGQATMLDIDFGTYPFVTSSSPSA 263
Query: 237 ASACVSTGLNPKAINEVIGITKAYSTRVGNGPFPSEDTTPMGDHLRTKGAEFGTTTKRPR 296
C G+ P + ++IG+ KAY+TRVG+GPFP+E+ GD LR G EFGTTT RPR
Sbjct: 264 GGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDLLRLAGQEFGTTTGRPR 323
Query: 297 RCGWLDLVALKYACALNGCTQLALMKLDVLDGIDAIKVCVAYERK-GERLEIFPSDLKDC 355
RCGWLD+VALK++C +NG L L KLDVL ++ I++ VAY+R G ++ FP DL+
Sbjct: 324 RCGWLDIVALKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVKSFPGDLRLL 383
Query: 356 VPI---YQTFKGWEKSV-GVRKLDDLEPNVREYIRFIEKEVGVKIRLISTSPEREDTIF 410
+ Y+ GW+ + VR DL ++Y+ IE+ VGV I I P R+ I+
Sbjct: 384 EELHVEYEVLPGWKSDISSVRNYSDLPKAAQQYVERIEELVGVPIHYIGIGPGRDALIY 442
>pdb|1GGJ|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201ala Variant.
pdb|1GGJ|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201ala Variant.
pdb|1GGJ|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201ala Variant.
pdb|1GGJ|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201ala Variant
Length = 753
Score = 26.2 bits (56), Expect = 7.2
Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 120 TTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHF 157
TT +G+ + R+G R LL+D IL EK+ HF
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKI-THF 117
>pdb|1GGH|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128ala Variant.
pdb|1GGH|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128ala Variant.
pdb|1GGH|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128ala Variant.
pdb|1GGH|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128ala Variant
Length = 753
Score = 26.2 bits (56), Expect = 7.2
Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 120 TTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHF 157
TT +G+ + R+G R LL+D IL EK+ HF
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKI-THF 117
>pdb|1GG9|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128asn Variant.
pdb|1GG9|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128asn Variant.
pdb|1GG9|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128asn Variant.
pdb|1GG9|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128asn Variant.
pdb|1GGF|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Variant His128asn, Complex With Hydrogen Peroxide.
pdb|1GGF|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Variant His128asn, Complex With Hydrogen Peroxide.
pdb|1GGF|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Variant His128asn, Complex With Hydrogen Peroxide.
pdb|1GGF|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Variant His128asn, Complex With Hydrogen Peroxide
Length = 753
Score = 26.2 bits (56), Expect = 7.2
Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 120 TTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHF 157
TT +G+ + R+G R LL+D IL EK+ HF
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKI-THF 117
>pdb|1GGE|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Native Structure At 1.9 A Resolution.
pdb|1GGE|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Native Structure At 1.9 A Resolution.
pdb|1GGE|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Native Structure At 1.9 A Resolution.
pdb|1GGE|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Native Structure At 1.9 A Resolution.
pdb|1IPH|A Chain A, Structure Of Catalase Hpii From Escherichia Coli
pdb|1IPH|B Chain B, Structure Of Catalase Hpii From Escherichia Coli
pdb|1IPH|C Chain C, Structure Of Catalase Hpii From Escherichia Coli
pdb|1IPH|D Chain D, Structure Of Catalase Hpii From Escherichia Coli
Length = 753
Score = 26.2 bits (56), Expect = 7.2
Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 120 TTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHF 157
TT +G+ + R+G R LL+D IL EK+ HF
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKI-THF 117
>pdb|1GGK|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201his Variant.
pdb|1GGK|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201his Variant.
pdb|1GGK|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201his Variant.
pdb|1GGK|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201his Variant
Length = 753
Score = 26.2 bits (56), Expect = 7.2
Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 120 TTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHF 157
TT +G+ + R+G R LL+D IL EK+ HF
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKI-THF 117
>pdb|1CF9|A Chain A, Structure Of The Mutant Val169cys Of Catalase Hpii From
Escherichia Coli
pdb|1CF9|B Chain B, Structure Of The Mutant Val169cys Of Catalase Hpii From
Escherichia Coli
pdb|1CF9|C Chain C, Structure Of The Mutant Val169cys Of Catalase Hpii From
Escherichia Coli
pdb|1CF9|D Chain D, Structure Of The Mutant Val169cys Of Catalase Hpii From
Escherichia Coli
Length = 753
Score = 26.2 bits (56), Expect = 7.2
Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 120 TTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHF 157
TT +G+ + R+G R LL+D IL EK+ HF
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKI-THF 117
>pdb|1QF7|A Chain A, Structure Of The Mutant His392gln Of Catalase Hpii From E.
Coli
pdb|1QF7|B Chain B, Structure Of The Mutant His392gln Of Catalase Hpii From E.
Coli
pdb|1QF7|C Chain C, Structure Of The Mutant His392gln Of Catalase Hpii From E.
Coli
pdb|1QF7|D Chain D, Structure Of The Mutant His392gln Of Catalase Hpii From E.
Coli
Length = 753
Score = 26.2 bits (56), Expect = 7.2
Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 120 TTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHF 157
TT +G+ + R+G R LL+D IL EK+ HF
Sbjct: 81 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKI-THF 117
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1VID| Catechol O-Methyltransferase
Length = 221
Score = 26.2 bits (56), Expect = 7.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 349 PSDLKDCVPIYQTFKGWEKSVGVRKLDDLEPNVREYIRFIEKEVG 393
P + + + Y T K W +VG K ++ +REY + E+G
Sbjct: 22 PQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELG 66
>pdb|2RMC|A Chain A, Cyclophilin C Complexed With Cyclosporin A
pdb|2RMC|C Chain C, Cyclophilin C Complexed With Cyclosporin A
pdb|2RMC|E Chain E, Cyclophilin C Complexed With Cyclosporin A
pdb|2RMC|G Chain G, Cyclophilin C Complexed With Cyclosporin A
Length = 182
Score = 25.8 bits (55), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (49%), Gaps = 3/48 (6%)
Query: 283 TKGAEFGTTTKRPRRCGWLDLVALKYACALNGCTQLALMKLDVLDGID 330
T G++F T +P WLD + + L+G T + ++L DG D
Sbjct: 111 TNGSQFFITLTKPT---WLDGKHVVFGKVLDGMTVVHSIELQATDGHD 155
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,481,309
Number of Sequences: 13198
Number of extensions: 108056
Number of successful extensions: 272
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 17
length of query: 411
length of database: 2,899,336
effective HSP length: 90
effective length of query: 321
effective length of database: 1,711,516
effective search space: 549396636
effective search space used: 549396636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)