BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644884|ref|NP_207054.1| hypothetical protein
[Helicobacter pylori 26695]
(142 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 35 0.003
pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s ... 30 0.14
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 29 0.18
pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And N... 27 1.2
pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And N... 27 1.2
pdb|1LB5|A Chain A, Traf6-Rank Complex >gi|22219214|pdb|1LB... 26 2.0
pdb|1LB4|A Chain A, Traf6 Apo Structure 26 2.0
pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaper... 25 2.6
pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome... 25 3.4
pdb|1DMG|A Chain A, Crystal Structure Of Ribosomal Protein L4 25 4.5
pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprote... 24 5.8
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of B... 24 7.6
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiati... 23 10.0
pdb|1I1G|A Chain A, Crystal Structure Of The Lrp-Like Trans... 23 10.0
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 35.0 bits (79), Expect = 0.003
Identities = 30/108 (27%), Positives = 58/108 (52%), Gaps = 12/108 (11%)
Query: 16 LEKIEQKLESKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSAL-RMEIEY 74
LEKI++KLE + +L + ++ + QAQ++ K L + ++L++AL R+E E
Sbjct: 1058 LEKIKRKLEGESSDLHE---QIAELQAQIAELK------AQLAKKEEELQAALARLEDET 1108
Query: 75 YQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKE 122
Q+ N K ++ LE ++LE K K +++++ + E+ E
Sbjct: 1109 SQK--NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELE 1154
Score = 25.4 bits (54), Expect = 2.6
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 30/150 (20%)
Query: 16 LEKIEQKLESKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALR-MEIEY 74
+E+ E++ + + E ++ ++++LD + QL + E L L+ ++ ME +
Sbjct: 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQL---EEEEAARQKLQLEKVTADGKIKKMEDDI 992
Query: 75 YQQESEN--LNKDLKILEKDY--LLAN--QELEKAKIIL--------------------E 108
E +N L K+ K+LE+ L N +E EKAK + E
Sbjct: 993 LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052
Query: 109 KEKQKEQKILEKKEQALLDENAMILHWQKE 138
K +Q+ +KI K E D + I Q +
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082
>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|R Chain R, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 248
Score = 29.6 bits (65), Expect = 0.14
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 15/90 (16%)
Query: 35 REVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALRMEIEYYQQESENLNKDLKILEKDY- 93
RE L+K A + +L +K ++ +E Q +N+ +L ++ +D
Sbjct: 169 REFLEKNYTDEAIETDDL----------TIKLVIKALLEVVQSGGKNI--ELAVMRRDQS 216
Query: 94 --LLANQELEKAKIILEKEKQKEQKILEKK 121
+L +E+EK +EKEK++ +K +KK
Sbjct: 217 LKILNPEEIEKYVAEIEKEKEENEKKKQKK 246
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 29.3 bits (64), Expect = 0.18
Identities = 27/120 (22%), Positives = 52/120 (42%), Gaps = 2/120 (1%)
Query: 21 QKLESKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALRMEIEYYQQESE 80
QKL+ + + + R+ + + L + + LQT Q + EIE + ++E
Sbjct: 438 QKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAE 497
Query: 81 NLNKDLKILEKDYLLANQELE-KAKIILEKEKQKEQKILEKKEQALLD-ENAMILHWQKE 138
+ K+L + Q +E K + E KQ +K+ + Q L + E + L Q++
Sbjct: 498 SAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQ 557
>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
Length = 416
Score = 26.6 bits (57), Expect = 1.2
Identities = 29/118 (24%), Positives = 56/118 (46%), Gaps = 11/118 (9%)
Query: 12 KTLALEKIEQKLESKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALRME 71
KT++ E L S+ N K +++ KNP+L + +FL + + +
Sbjct: 208 KTISSEDEPFNLRSRNPIYSNN----FGKFFEITPEKNPQLRDLDIFLSSVDINEGALL- 262
Query: 72 IEYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQALLDEN 129
+ ++ ++ + L I E D AN EL K +K+KQ+E+ + ++ +A L E+
Sbjct: 263 LPHFNSKAIVI---LVINEGD---ANIELVGIKEQQQKQKQEEEPLEVQRYRAELSED 314
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers Complexes With N-Acetyl-D-
Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers Complexes With N-Acetyl-D-
Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers Complexes With N-Acetyl-D-
Glucosamine
Length = 416
Score = 26.6 bits (57), Expect = 1.2
Identities = 29/118 (24%), Positives = 56/118 (46%), Gaps = 11/118 (9%)
Query: 12 KTLALEKIEQKLESKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALRME 71
KT++ E L S+ N K +++ KNP+L + +FL + + +
Sbjct: 208 KTISSEDEPFNLRSRNPIYSNN----FGKFFEITPEKNPQLRDLDIFLSSVDINEGALL- 262
Query: 72 IEYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQALLDEN 129
+ ++ ++ + L I E D AN EL K +K+KQ+E+ + ++ +A L E+
Sbjct: 263 LPHFNSKAIVI---LVINEGD---ANIELVGIKEQQQKQKQEEEPLEVQRYRAELSED 314
>pdb|1LB5|A Chain A, Traf6-Rank Complex
pdb|1LB6|A Chain A, Traf6-Cd40 Complex
Length = 160
Score = 25.8 bits (55), Expect = 2.0
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 23 LESKRLELQQNEREVLDKQAQLSAFKNPEL 52
L+ ++QN E++D + +L AF+ P +
Sbjct: 89 LDQSEAPVRQNHEEIMDAKPELLAFQRPTI 118
>pdb|1LB4|A Chain A, Traf6 Apo Structure
Length = 159
Score = 25.8 bits (55), Expect = 2.0
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 23 LESKRLELQQNEREVLDKQAQLSAFKNPEL 52
L+ ++QN E++D + +L AF+ P +
Sbjct: 88 LDQSEAPVRQNHEEIMDAKPELLAFQRPTI 117
>pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
pdb|1QSD|B Chain B, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
Length = 106
Score = 25.4 bits (54), Expect = 2.6
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 68 LRMEIEYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEK 120
L E YYQQE ++ + L++D + +L+K + +L+ K+ + EK
Sbjct: 16 LTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEK 68
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
Length = 254
Score = 25.0 bits (53), Expect = 3.4
Identities = 15/60 (25%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 64 LKSALRMEIEYYQQESENLNKDLKILEKDYL-LANQELEKAKIILEKEKQKEQKILEKKE 122
+K +R +E Q ++N+ + + D + L+++E+ + +E+EKQ++Q+ +KK+
Sbjct: 192 VKLTVRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQEKQEQQEQDKKKK 251
>pdb|1DMG|A Chain A, Crystal Structure Of Ribosomal Protein L4
Length = 225
Score = 24.6 bits (52), Expect = 4.5
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 79 SENLNKDLKILEKDYLLANQELEKAKIIL-----EKEKQKEQKILEKKEQALLDENAMIL 133
S+ LNK +K L L+ + E ++L E+ K K K + + Q + ++L
Sbjct: 97 SKKLNKKMKKLALRSALSVKYRENKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVL 156
Query: 134 HWQKEG 139
W++EG
Sbjct: 157 PWKEEG 162
>pdb|1AV1|A Chain A, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|B Chain B, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|C Chain C, Crystal Structure Of Human Apolipoprotein A-I
pdb|1AV1|D Chain D, Crystal Structure Of Human Apolipoprotein A-I
Length = 201
Score = 24.3 bits (51), Expect = 5.8
Identities = 34/125 (27%), Positives = 55/125 (43%), Gaps = 20/125 (16%)
Query: 16 LEKIEQKLESKRLELQQNEREVL-DKQAQLSAFKNPELGGMSLFLQTQQLKSALRMEIEY 74
+E QK+E R ELQ+ R+ L + Q +LS G + + + ALR +
Sbjct: 70 MELYRQKVEPLRAELQEGARQKLHELQEKLSPL------GEEMRDRARAHVDALRTHLAP 123
Query: 75 YQQE-SENLNKDLKILEKD--------YLLANQEL----EKAKIILEKEKQKEQKILEKK 121
Y E + L L+ L+++ + A + L EKAK LE +Q +LE
Sbjct: 124 YSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESF 183
Query: 122 EQALL 126
+ + L
Sbjct: 184 KVSFL 188
>pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'-Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'-Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 23.9 bits (50), Expect = 7.6
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 53 GGMSLFLQTQQLKSALRMEIE----YYQQESENLNKDLKILEKDYLLANQELEKAKIILE 108
GG+ + + ++ A R EIE Y Q++ N N D + + A Q LEK+
Sbjct: 66 GGIGIIHKNMSIE-AQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKN 124
Query: 109 KEKQKE 114
E +++
Sbjct: 125 AEHKED 130
>pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
Length = 594
Score = 23.5 bits (49), Expect = 10.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 29 ELQQNEREVLDKQAQLSAFKNPELG 53
+L E +++DK A++ KNP+ G
Sbjct: 565 DLTDEELDLMDKIAEIKRKKNPDWG 589
>pdb|1I1G|A Chain A, Crystal Structure Of The Lrp-Like Transcriptional
Regulator From The Archaeon Pyrococcus Furiosus
pdb|1I1G|B Chain B, Crystal Structure Of The Lrp-Like Transcriptional
Regulator From The Archaeon Pyrococcus Furiosus
Length = 141
Score = 23.5 bits (49), Expect = 10.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 86 LKILEKDYLLANQELEKAKIILEKEKQKEQKILEKK 121
L+ILEKD E+ K I E +K K LE+K
Sbjct: 10 LEILEKDARTPFTEIAKKLGISETAVRKRVKALEEK 45
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.310 0.128 0.323
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 668,540
Number of Sequences: 13198
Number of extensions: 23102
Number of successful extensions: 69
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 60
Number of HSP's gapped (non-prelim): 15
length of query: 142
length of database: 2,899,336
effective HSP length: 79
effective length of query: 63
effective length of database: 1,856,694
effective search space: 116971722
effective search space used: 116971722
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.5 bits)