BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644885|ref|NP_207055.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(219 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 46 3e-06
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 38 0.001
pdb|1LKV|X Chain X, Crystal Structure Of The Middle And C-T... 36 0.003
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 31 0.097
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 31 0.097
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Del... 31 0.097
pdb|1NDD|B Chain B, Structure Of Nedd8 >gi|6729938|pdb|1NDD... 30 0.17
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Del... 30 0.17
pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck >gi|2... 30 0.17
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2... 30 0.17
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 30 0.22
pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey D... 30 0.22
pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 29 0.37
pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomeras... 29 0.37
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crysta... 29 0.37
pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-R... 29 0.37
pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 29 0.37
pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I... 29 0.37
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crysta... 29 0.37
pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I... 29 0.37
pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crysta... 29 0.37
pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoen... 29 0.48
pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus ... 29 0.48
pdb|1FXK|B Chain B, Crystal Structure Of Archaeal Prefoldin... 28 0.82
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm D... 28 0.82
pdb|1LNR|T Chain T, Crystal Structure Of The Large Ribosoma... 28 0.82
pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonucle... 28 0.82
pdb|1F1M|A Chain A, Crystal Structure Of Outer Surface Prot... 28 1.1
pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 27 1.4
pdb|1FXK|A Chain A, Crystal Structure Of Archaeal Prefoldin... 27 1.4
pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recy... 27 1.8
pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal Complex... 27 2.4
pdb|2HDH|A Chain A, Biochemical Characterization And Struct... 27 2.4
pdb|1G61|A Chain A, Crystal Structure Of M.Jannaschii Eif6 ... 27 2.4
pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein... 27 2.4
pdb|1SCJ|B Chain B, Crystal Structure Of Subtilisin-Propept... 27 2.4
pdb|3HAD|A Chain A, Biochemical Characterization And Struct... 26 3.1
pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl C... 26 3.1
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Compl... 26 3.1
pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mu... 26 3.1
pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Compl... 26 3.1
pdb|1AE1|B Chain B, Tropinone Reductase-I Complex With Nadp... 26 4.1
pdb|1CII| Colicin Ia 26 4.1
pdb|1PEH| Nmr Structure Of The Membrane-Binding Domain Of... 25 5.3
pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s ... 25 5.3
pdb|1FPS| Avian Farnesyl Diphosphate Synthase (Fps) (E.C.... 25 7.0
pdb|1UBX| Structure Of Farnesyl Pyrophosphate Synthetase 25 7.0
pdb|1UBY| Structure Of Farnesyl Pyrophosphate Synthetase ... 25 7.0
pdb|1IW7|F Chain F, Crystal Structure Of The Rna Polymerase... 25 7.0
pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Huma... 25 7.0
pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases... 25 9.1
pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free ... 25 9.1
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 46.2 bits (108), Expect = 3e-06
Identities = 38/157 (24%), Positives = 80/157 (50%), Gaps = 14/157 (8%)
Query: 12 QALFSEEAAQELLQCSAIF-ESKKAELKDDLRRLSEKEQSLRILQTENARLLDEKTDLLN 70
+ L EEAA++ LQ + + K +++DD+ + ++ L T+ +LL+E+ L
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL----TKERKLLEERVSDLT 1017
Query: 71 QKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKIGETYSKM 130
E EEK KNL + +++ +E + RLK E++ L +IK+ + + + + ++
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKK-EEKSRQELEKIKRKLEGESSDLHEQI 1076
Query: 131 KDSKSALILENLPTQNALEILMALKPQELGKILAKMD 167
+ ++ + L+ +A K +EL LA+++
Sbjct: 1077 AELQAQIA--------ELKAQLAKKEEELQAALARLE 1105
Score = 39.3 bits (90), Expect = 4e-04
Identities = 45/174 (25%), Positives = 77/174 (43%), Gaps = 22/174 (12%)
Query: 31 ESKKAELKDDLRRLSEKEQSLRILQTENARLLDEKTDLLNQKEKEVEEKLKNLAAK---- 86
E K +L ++ L EK Q+ +TE +E L K++E+EE L + A+
Sbjct: 884 EQKHTQLCEEKNLLQEKLQA----ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEE 939
Query: 87 EEAFKTLQTEEKKR------LKNLIEENEGILREIK------QAKDSKIGETYSKMKDSK 134
EE + LQ E+KK L+ +EE E ++++ K K+ + M+D
Sbjct: 940 EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999
Query: 135 SALILENLPTQNALEILMA--LKPQELGKILAKMDPKKAAALTELWQKPPKENK 186
+ L E + + L + +E K L K+ K + ++EL + KE K
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEK 1053
Score = 38.1 bits (87), Expect = 8e-04
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 39/198 (19%)
Query: 32 SKKAELKDDLR----RLSEKEQSLRILQTENARLLDEKTDLLNQKEKEVEEKLKNLAAKE 87
+KK EL++ L R+ E+E+ + LQ E ++ + DL Q E+E + K K
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV 979
Query: 88 EAFKTLQ----------------TEEKKRLK--------NLIEENEGI--LREIKQAKDS 121
A ++ T+E+K L+ NL EE E L ++K +S
Sbjct: 980 TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHES 1039
Query: 122 KIGETYSKM-KDSKSALILENL------PTQNALEILMALKPQ--ELGKILAKMDPKKAA 172
I E ++ K+ KS LE + + + E + L+ Q EL LAK + + A
Sbjct: 1040 MISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099
Query: 173 ALTELWQKPPKENKEIPK 190
AL L + ++N + K
Sbjct: 1100 ALARLEDETSQKNNALKK 1117
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 37.7 bits (86), Expect = 0.001
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 16 SEEAAQELLQCSAIFESKKAELKDDLRRLSEK----EQSLRILQTENARLLDEKTDLLNQ 71
S++AAQE L+ I S E+ ++ L+EK +Q L Q EN R + EK L Q
Sbjct: 159 SDKAAQERLK-KEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQ 217
Query: 72 KEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEE 107
+ +A EE KTL E ++ +KN +E
Sbjct: 218 EA---------VAEYEEKLKTLTVEVQEXVKNYXKE 244
Score = 30.4 bits (67), Expect = 0.17
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 21 QELLQCSAIFESKKAELKDDLRRLSEKEQSLRILQTENARLLDE------KTDLLNQKEK 74
+++ + A+ ES ++ +KD ++L K L +Q D+ K ++ N +
Sbjct: 120 KQIAELKALKESSESNIKDIKKKLEAKR--LDRIQVXXRSTSDKAAQERLKKEINNSHIQ 177
Query: 75 EVEEKLKNLAAKEEAFKTLQTEEKKRLKNL--IEENEGILRE 114
EV + +K L K ++ Q E+K+ +NL I+E EG L++
Sbjct: 178 EVVQTIKLLTEKTARYQ--QKLEEKQAENLRAIQEKEGQLQQ 217
>pdb|1LKV|X Chain X, Crystal Structure Of The Middle And C-Terminal Domains Of
The Flagellar Rotor Protein Flig
Length = 232
Score = 36.2 bits (82), Expect = 0.003
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 29/168 (17%)
Query: 10 ILQALFSEEAAQELLQCSAIFESKKAELKDDLRRLSEKEQSLRILQT-ENARLLDEKTDL 68
IL AL EE E+L+ A+ E E+ ++ R EK+ S + +T +D ++
Sbjct: 43 ILGAL-PEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEI 101
Query: 69 LNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKIGETYS 128
+N ++ T EKK + L++EN + EI+ + + E
Sbjct: 102 MNNLDR--------------------TTEKKIMDKLVQENPELADEIR--RRMFVFEDIL 139
Query: 129 KMKDSKSALILENLPTQNALEILMALK--PQELGKILAKMDPKKAAAL 174
K+ D L+L + T+ ++ +ALK EL + + K K+AAAL
Sbjct: 140 KLDDRSIQLVLREVDTR---DLALALKGASDELKEKIFKNMSKRAAAL 184
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 31.2 bits (69), Expect = 0.097
Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 17 EEAAQELLQCSAIFE--SKKAELKDDLRRLSEKEQSLRILQTENARLLDEKTDLLNQKEK 74
EE A++L+ + E ++AEL + + +E E+ ++ + T N + L+ + + +QKE
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEG--KCAELEEEIKTV-TNNLKSLEAQAEKYSQKED 219
Query: 75 EVEEKLKNLAAKEEAFKT 92
+ EE++K L+ K + +T
Sbjct: 220 KYEEEIKVLSDKLKEAET 237
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 31.2 bits (69), Expect = 0.097
Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 17 EEAAQELLQCSAIFE--SKKAELKDDLRRLSEKEQSLRILQTENARLLDEKTDLLNQKEK 74
EE A++L+ + E ++AEL + + +E E+ ++ + T N + L+ + + +QKE
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEG--KCAELEEEIKTV-TNNLKSLEAQAEKYSQKED 219
Query: 75 EVEEKLKNLAAKEEAFKT 92
+ EE++K L+ K + +T
Sbjct: 220 KYEEEIKVLSDKLKEAET 237
>pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 31.2 bits (69), Expect = 0.097
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 42 RRLSEKEQSLRILQT---ENARLLDEKTDL---LNQKEKEVEEKLKNLAAKEEAFKTLQT 95
+RLSE + I E A +L KT+L L+ EK EE K + ++ + +QT
Sbjct: 32 QRLSEVDIQASIAYAKALEKAGILT-KTELEKILSGLEKISEELSKGVIVVTQSDEDIQT 90
Query: 96 EEKKRLKNLIEENEGILREIKQAKDSKIGETYSKMKDSKSAL------ILENLPTQNALE 149
++RLK LI + G L + + + + MK+S S + +++ L + A+E
Sbjct: 91 ANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIE 150
Query: 150 I 150
I
Sbjct: 151 I 151
>pdb|1NDD|B Chain B, Structure Of Nedd8
pdb|1NDD|A Chain A, Structure Of Nedd8
pdb|1NDD|C Chain C, Structure Of Nedd8
pdb|1NDD|D Chain D, Structure Of Nedd8
Length = 76
Score = 30.4 bits (67), Expect = 0.17
Identities = 21/68 (30%), Positives = 30/68 (43%), Gaps = 7/68 (10%)
Query: 79 KLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGI-------LREIKQAKDSKIGETYSKMK 131
K+K L KE T++ +R+K +EE EGI + KQ D K Y +
Sbjct: 4 KVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILG 63
Query: 132 DSKSALIL 139
S L+L
Sbjct: 64 GSVLHLVL 71
>pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 30.4 bits (67), Expect = 0.17
Identities = 24/93 (25%), Positives = 45/93 (47%), Gaps = 6/93 (6%)
Query: 64 EKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKI 123
E +L+ EK EE K + +++ + + T ++RLK LI + G L + D +
Sbjct: 61 ELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVV 120
Query: 124 GETYSKMKDSKSAL------ILENLPTQNALEI 150
+ MK+S S + +++ L + A+EI
Sbjct: 121 TDLKLFMKNSLSIISTHLLQLIKTLVERAAIEI 153
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 30.4 bits (67), Expect = 0.17
Identities = 24/93 (25%), Positives = 45/93 (47%), Gaps = 6/93 (6%)
Query: 64 EKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKI 123
E +L+ EK EE K + +++ + + T ++RLK LI + G L + D +
Sbjct: 61 ELEKILSGLEKISEEWSKGVFVVKQSDEDINTANERRLKELIGDIAGKLHTGRSRNDQVV 120
Query: 124 GETYSKMKDSKSAL------ILENLPTQNALEI 150
+ MK+S S + +++ L + A+EI
Sbjct: 121 TDLKLFMKNSLSIISTHLLQLIKTLVERAAIEI 153
>pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 30.4 bits (67), Expect = 0.17
Identities = 24/93 (25%), Positives = 45/93 (47%), Gaps = 6/93 (6%)
Query: 64 EKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKI 123
E +L+ EK EE K + +++ + + T ++RLK LI + G L + D +
Sbjct: 61 ELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVV 120
Query: 124 GETYSKMKDSKSAL------ILENLPTQNALEI 150
+ MK+S S + +++ L + A+EI
Sbjct: 121 TDLKLFMKNSLSIISTHLLQLIKTLVERAAIEI 153
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 30.0 bits (66), Expect = 0.22
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 26/120 (21%)
Query: 45 SEKEQSLRILQTENARLLDEKTDLLNQKEKEVE-EKLKNLAAKEEAFKTLQTEEKKRLKN 103
S++ + ILQT+ L +KEKE+E E++K +A+ A K L
Sbjct: 467 SKESMTDAILQTDQT---------LTEKEKEIEVERVKAESAQASA---------KMLHE 508
Query: 104 LIEENEGILREIKQAKDSKIGETYSKMKDSKSALILENLPTQNALEILMALKPQELGKIL 163
+ +NE ++ + +++ + + KM++ + L+ E E +ALK QE ++L
Sbjct: 509 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQ-------ERTLALKLQEQEQLL 561
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 30.0 bits (66), Expect = 0.22
Identities = 23/93 (24%), Positives = 45/93 (47%), Gaps = 6/93 (6%)
Query: 64 EKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKI 123
E +L+ EK EE K + ++ + +QT ++RLK LI + G L+ + + +
Sbjct: 59 ELEKILSGLEKISEESSKGVLVMTQSDEDIQTAIERRLKELIGDIAGKLQTGRSRNEQVV 118
Query: 124 GETYSKMKDSKSAL------ILENLPTQNALEI 150
+ +K S S + +++ L + A+EI
Sbjct: 119 TDLKLLLKSSISVISTHLLQLIKTLVERAAIEI 151
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 29.3 bits (64), Expect = 0.37
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 63 DEKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILRE 114
+EK + N + + + + A+ EA K + EEK ++K EENE +L+E
Sbjct: 88 EEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIK---EENEKLLKE 136
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 29.3 bits (64), Expect = 0.37
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 63 DEKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILRE 114
+EK + N + + + + A+ EA K + EEK ++K EENE +L+E
Sbjct: 87 EEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIK---EENEKLLKE 135
>pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 436
Score = 29.3 bits (64), Expect = 0.37
Identities = 24/93 (25%), Positives = 44/93 (46%), Gaps = 6/93 (6%)
Query: 64 EKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKI 123
E +L+ EK EE K + + + + + T ++RLK LI + G L + D +
Sbjct: 41 ELAKILSGLEKISEEWSKGVFVVKGSDEDIHTANERRLKELIGDIAGKLNTGRSRNDQVV 100
Query: 124 GETYSKMKDSKSAL------ILENLPTQNALEI 150
+ MK+S S + +++ L + A+EI
Sbjct: 101 TDLKLFMKNSLSIISTHLLQLIKTLVERAAIEI 133
>pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 1264
Score = 29.3 bits (64), Expect = 0.37
Identities = 32/144 (22%), Positives = 62/144 (42%), Gaps = 26/144 (18%)
Query: 3 KILLLGLILQALFSEEAAQELLQCSAIFESKKAELKDDLRRLSEKEQSLRILQTENARLL 62
+IL ++ +A+ E+ AQEL+Q +K LKD + + LR+ + ARLL
Sbjct: 619 RILFARIVGEAVGDEKVAQELIQMDV--PQEKNSLKDLV-----YQAFLRLGMEKTARLL 671
Query: 63 D-------------------EKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKN 103
D + + +K++ +EE + L E+A++ +++R
Sbjct: 672 DALKYYGFTLSTTSGITIGIDDAVIPEEKQRYLEEADRKLRQIEQAYEMGFLTDRERYDQ 731
Query: 104 LIEENEGILREIKQAKDSKIGETY 127
+I+ ++ QA + E Y
Sbjct: 732 VIQLWTETTEKVTQAVFNNFEENY 755
>pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex
Length = 592
Score = 29.3 bits (64), Expect = 0.37
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 63 DEKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILRE 114
+EK + N + + + + A+ EA K + EEK ++K EENE +L+E
Sbjct: 116 EEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIK---EENEKLLKE 164
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 29.3 bits (64), Expect = 0.37
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 63 DEKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILRE 114
+EK + N + + + + A+ EA K + EEK ++K EENE +L+E
Sbjct: 115 EEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIK---EENEKLLKE 163
>pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 434
Score = 29.3 bits (64), Expect = 0.37
Identities = 24/93 (25%), Positives = 44/93 (46%), Gaps = 6/93 (6%)
Query: 64 EKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKI 123
E +L+ EK EE K + + + + + T ++RLK LI + G L + D +
Sbjct: 43 ELAKILSGLEKISEEWSKGVFVVKGSDEDIHTANERRLKELIGDIAGKLNTGRSRNDQVV 102
Query: 124 GETYSKMKDSKSAL------ILENLPTQNALEI 150
+ MK+S S + +++ L + A+EI
Sbjct: 103 TDLKLFMKNSLSIISTHLLQLIKTLVERAAIEI 135
>pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I In Non-Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 29.3 bits (64), Expect = 0.37
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 63 DEKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILRE 114
+EK + N + + + + A+ EA K + EEK ++K EENE +L+E
Sbjct: 115 EEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIK---EENEKLLKE 163
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 424
Score = 29.3 bits (64), Expect = 0.37
Identities = 24/93 (25%), Positives = 44/93 (46%), Gaps = 6/93 (6%)
Query: 64 EKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKI 123
E +L+ EK EE K + + + + + T ++RLK LI + G L + D +
Sbjct: 29 ELAKILSGLEKISEEWSKGVFVVKGSDEDIHTANERRLKELIGDIAGKLNTGRSRNDQVV 88
Query: 124 GETYSKMKDSKSAL------ILENLPTQNALEI 150
+ MK+S S + +++ L + A+EI
Sbjct: 89 TDLKLFMKNSLSIISTHLLQLIKTLVERAAIEI 121
>pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|M Chain M, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|D Chain D, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 1524
Score = 28.9 bits (63), Expect = 0.48
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 26/144 (18%)
Query: 3 KILLLGLILQALFSEEAAQELLQCSAIFESKKAELKDDLRRLSEKEQSLRILQTENARLL 62
+IL ++ +A+ E+ AQEL+Q +K LKD + + LR+ + ARLL
Sbjct: 879 RILFARIVGEAVGDEKVAQELIQMDV--PQEKNSLKDLV-----YQAFLRLGMEKTARLL 931
Query: 63 D-------------------EKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKN 103
D + + +K++ +EE + L E+A++ +++R
Sbjct: 932 DALKYYGFTLSTTSGITIGIDDAVIPEEKQRYLEEADRKLRQIEQAYEMGFLTDRERYDQ 991
Query: 104 LIEENEGILREIKQAKDSKIGETY 127
+I+ ++ QA E Y
Sbjct: 992 VIQLWTETTEKVTQAVFKNFEENY 1015
>pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
Length = 1265
Score = 28.9 bits (63), Expect = 0.48
Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 27/145 (18%)
Query: 3 KILLLGLILQALFSEEAAQELLQCSAIFESKKAELKDDLRRLSEKEQSLRILQTENARLL 62
+IL ++ +A+ E+ AQEL+Q +K LKD + + LR+ + ARLL
Sbjct: 619 RILFARIVGEAVGDEKVAQELIQMDV--PQEKNSLKDLV-----YQAFLRLGMEKTARLL 671
Query: 63 D--------------------EKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLK 102
D + + +K++ +EE + L E+A++ +++R
Sbjct: 672 DALKYYGFTLSTTSGIITIGIDDAVIPEEKQRYLEEADRKLRQIEQAYEMGFLTDRERYD 731
Query: 103 NLIEENEGILREIKQAKDSKIGETY 127
+I+ ++ QA + E Y
Sbjct: 732 QVIQLWTETTEKVTQAVFNNFEENY 756
>pdb|1FXK|B Chain B, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 109
Score = 28.1 bits (61), Expect = 0.82
Identities = 25/102 (24%), Positives = 44/102 (42%), Gaps = 6/102 (5%)
Query: 17 EEAAQELLQCSAIFESKKAELKDDLRRLSEKEQSLRILQTENARLLDEKTDLLNQKEKEV 76
++ AQ + E + E + L LS + ++ L+ D L + E+
Sbjct: 13 QQQAQAISVQKQTVEXQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTE---EL 69
Query: 77 EEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQA 118
+EKL+ L +E KT++ +E++ K L E I K A
Sbjct: 70 QEKLETLQLRE---KTIERQEERVXKKLQEXQVNIQEAXKGA 108
>pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
Length = 297
Score = 28.1 bits (61), Expect = 0.82
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 16 SEEAAQELLQCSAIFESKKAELKDDLRRLSEKEQSLRILQTENARLLDEKTDLLNQKEKE 75
SEE QE+ Q + K+A L D++ E L + A+ D ++
Sbjct: 90 SEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQ-AKYGDYNKEIHKPGYLA 148
Query: 76 VEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILRE------IKQAKDSKI-GETYS 128
+ L ++ Q EE R++N EE+ G+LRE +K A+D ++ G Y
Sbjct: 149 NDRLLPQRVLEQHKLTKEQWEE--RIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYF 206
Query: 129 KMKDSK 134
++K+ K
Sbjct: 207 EIKNKK 212
>pdb|1LNR|T Chain T, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 237
Score = 28.1 bits (61), Expect = 0.82
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 8 GLILQALFSEEAAQELLQCSAIFESKKAELKDD 40
GL+ SEEAA+ +L+ A E KAE +D
Sbjct: 192 GLVAAGELSEEAAEAVLEGDASLEEVKAEASED 224
>pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
Length = 230
Score = 28.1 bits (61), Expect = 0.82
Identities = 17/48 (35%), Positives = 27/48 (55%), Gaps = 2/48 (4%)
Query: 73 EKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKD 120
EKE EE+LK L K+ K L ++ LK L+E + + I +A++
Sbjct: 26 EKEREEELKKLGVKDS--KELTKNKRAYLKKLLENLGYVEKRILEAEE 71
>pdb|1F1M|A Chain A, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|B Chain B, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|C Chain C, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|D Chain D, Crystal Structure Of Outer Surface Protein C (Ospc)
Length = 164
Score = 27.7 bits (60), Expect = 1.1
Identities = 25/102 (24%), Positives = 44/102 (42%), Gaps = 5/102 (4%)
Query: 27 SAIFESKKAELKDDLRRLSEKEQSLRILQTENARLLDEKTDLLNQKEKEVEEKLKNLAAK 86
S + K + +KD +E E++ + + A+L E TDL KE ++ K K
Sbjct: 67 STLITKKISAIKDSGELKAEIEKAKKCSEEFTAKLKGEHTDL--GKEGVTDDNAKKAILK 124
Query: 87 EEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKIGETYS 128
KT +E L+ L E + + + K+ + + E S
Sbjct: 125 TNNDKTKGADE---LEKLFESVKNLSKAAKEMLTNSVKELTS 163
>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1
Length = 76
Score = 27.3 bits (59), Expect = 1.4
Identities = 21/68 (30%), Positives = 29/68 (41%), Gaps = 7/68 (10%)
Query: 79 KLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGI-------LREIKQAKDSKIGETYSKMK 131
K+K L KE T+ R+K +EE EGI + KQ D K + Y+
Sbjct: 4 KVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEG 63
Query: 132 DSKSALIL 139
S L+L
Sbjct: 64 GSVLHLVL 71
>pdb|1FXK|A Chain A, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 107
Score = 27.3 bits (59), Expect = 1.4
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 17 EEAAQELLQCSAIFESKKAELKDDLRRLSEKEQSLRILQTENARLLDEKTDLLNQKEKEV 76
++ AQ + E + E + L LS + ++ L+ D L + E+
Sbjct: 14 QQQAQAISVQKQTVEXQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTE---EL 70
Query: 77 EEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIK 116
+EKL+ L +E KT++ +E++ K L E I K
Sbjct: 71 QEKLETLQLRE---KTIERQEERVXKKLQEXQVNIQEAXK 107
>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor
Length = 184
Score = 26.9 bits (58), Expect = 1.8
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 2/43 (4%)
Query: 36 ELKDDLRRLSE--KEQSLRILQTENARLLDEKTDLLNQKEKEV 76
E+ ++L +SE K+++L LQ + +DE L+ KEKE+
Sbjct: 139 EMIEELEGISEDEKKRALERLQKLTDKYIDEINKLMEAKEKEI 181
>pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 79
Score = 26.6 bits (57), Expect = 2.4
Identities = 15/66 (22%), Positives = 34/66 (50%), Gaps = 10/66 (15%)
Query: 57 ENARLLDEKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIK 116
ENA +E+ + + +E EE+ K K E EE++ ++ I + G+ +++K
Sbjct: 12 ENA---EEEAAAIEEARREAEERRKEKHRKME-------EEREEMRQTIRDKYGLKKKVK 61
Query: 117 QAKDSK 122
+ +++
Sbjct: 62 EEPEAE 67
>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|2HDH|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 293
Score = 26.6 bits (57), Expect = 2.4
Identities = 21/88 (23%), Positives = 38/88 (42%), Gaps = 12/88 (13%)
Query: 61 LLDEKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKD 120
L+D+ D+L + +K +EE L+ +A +KK +N +E + + +
Sbjct: 32 LVDQTEDILAKSKKGIEESLRKVA------------KKKFAENPKAGDEFVAKTLSTIAT 79
Query: 121 SKIGETYSKMKDSKSALILENLPTQNAL 148
S + D I+ENL +N L
Sbjct: 80 STDAASVVHSTDLVVEAIVENLKVKNEL 107
>pdb|1G61|A Chain A, Crystal Structure Of M.Jannaschii Eif6
pdb|1G61|B Chain B, Crystal Structure Of M.Jannaschii Eif6
Length = 228
Score = 26.6 bits (57), Expect = 2.4
Identities = 18/53 (33%), Positives = 30/53 (55%), Gaps = 3/53 (5%)
Query: 91 KTLQTEEKKRLKNLIEENEGILR-EIKQAKDSKIGETYSKMKDSKSALILENL 142
K ++ EE R+KN ++EN L EI ++K++ +G + + K ALI L
Sbjct: 74 KIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLI--LTNDKGALISPEL 124
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 26.6 bits (57), Expect = 2.4
Identities = 16/74 (21%), Positives = 35/74 (46%)
Query: 61 LLDEKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKD 120
+LDE + LN + EK+ N K++ + + NL ++ G IK +
Sbjct: 152 ILDEADEXLNXGFIKDVEKILNACNKDKRILLFSATXPREILNLAKKYXGDYSFIKAKIN 211
Query: 121 SKIGETYSKMKDSK 134
+ I ++Y ++ +++
Sbjct: 212 ANIEQSYVEVNENE 225
>pdb|1SCJ|B Chain B, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 71
Score = 26.6 bits (57), Expect = 2.4
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 46 EKEQSLRILQTENARLLDEKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLK 102
EK+ + QT +A +K D+++QK +VE++ K + A A TL + K LK
Sbjct: 1 EKKYIVGFKQTMSAMSSAKKKDVISQKGGKVEKQFKYVNA---AAATLDEKAVKELK 54
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 26.2 bits (56), Expect = 3.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 61 LLDEKTDLLNQKEKEVEEKLKNLAAKEEA 89
L+D+ D+L + +K +EE L+ +A K+ A
Sbjct: 43 LVDQTEDILAKSKKGIEESLRKVAKKKFA 71
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 26.2 bits (56), Expect = 3.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 61 LLDEKTDLLNQKEKEVEEKLKNLAAKEEA 89
L+D+ D+L + +K +EE L+ +A K+ A
Sbjct: 43 LVDQTEDILAKSKKGIEESLRKVAKKKFA 71
>pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
Length = 310
Score = 26.2 bits (56), Expect = 3.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 61 LLDEKTDLLNQKEKEVEEKLKNLAAKEEA 89
L+D+ D+L + +K +EE L+ +A K+ A
Sbjct: 43 LVDQTEDILAKSKKGIEESLRKVAKKKFA 71
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human
L-3- Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human
L-3- Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 26.2 bits (56), Expect = 3.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 61 LLDEKTDLLNQKEKEVEEKLKNLAAKEEA 89
L+D+ D+L + +K +EE L+ +A K+ A
Sbjct: 43 LVDQTEDILAKSKKGIEESLRKVAKKKFA 71
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 26.2 bits (56), Expect = 3.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 61 LLDEKTDLLNQKEKEVEEKLKNLAAKEEA 89
L+D+ D+L + +K +EE L+ +A K+ A
Sbjct: 43 LVDQTEDILAKSKKGIEESLRKVAKKKFA 71
>pdb|1AE1|B Chain B, Tropinone Reductase-I Complex With Nadp
pdb|1AE1|A Chain A, Tropinone Reductase-I Complex With Nadp
Length = 273
Score = 25.8 bits (55), Expect = 4.1
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 56 TENARLLDEKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEK--KRLKNLIEENEGILR 113
+ N + LDE ++ +K VE + +L ++ E K +QT N++ N G++
Sbjct: 52 SRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVI 111
Query: 114 EIKQAKD 120
K+AKD
Sbjct: 112 H-KEAKD 117
>pdb|1CII| Colicin Ia
Length = 602
Score = 25.8 bits (55), Expect = 4.1
Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 69 LNQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLI---EENEGILREIKQAKDSKIGE 125
+ +++KE+ L+A+++ + +TE KRL I E++E L+ ++
Sbjct: 48 IEKRDKEITAYKNTLSAQQKENENKRTEAGKRLSAAIAAREKDENTLKTLRAGNADAADI 107
Query: 126 TYSKMKDSKSALILENLPTQ----NALEILMALKPQELGKILAKMDPKKAAALTELWQKP 181
T + + ++ L T+ +AL + + ++ P++A +L E +K
Sbjct: 108 TRQEFRLLQAELREYGFRTEIAGYDALRLHTESRMLFADADSLRISPREARSLIEQAEKR 167
Query: 182 PKENKEIPKTTA 193
K+ + K A
Sbjct: 168 QKDAQNADKKAA 179
>pdb|1PEH| Nmr Structure Of The Membrane-Binding Domain Of Ctp
Phosphocholine Cytidylyltransferase, 10 Structures
Length = 35
Score = 25.4 bits (54), Expect = 5.3
Identities = 12/27 (44%), Positives = 16/27 (58%)
Query: 62 LDEKTDLLNQKEKEVEEKLKNLAAKEE 88
L E+ D + +K K+VEEK K K E
Sbjct: 8 LQERVDKVKKKVKDVEEKSKEWVQKVE 34
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 25.4 bits (54), Expect = 5.3
Identities = 19/61 (31%), Positives = 33/61 (53%), Gaps = 6/61 (9%)
Query: 40 DLRRLSEKEQSLRILQTENARLLDEKTDLLNQKEKEVEEKLKNLAAKEEAFKTLQTEEKK 99
D+ +LS ++ + L EN KT + K+KEVE+ +K +EEA + +EK+
Sbjct: 202 DVSKLSAEKVEIATLTRENG-----KTVIRVLKQKEVEQLIKK-HEEEEAKAEREKKEKE 255
Query: 100 R 100
+
Sbjct: 256 Q 256
>pdb|1FPS| Avian Farnesyl Diphosphate Synthase (Fps) (E.C.2.5.1.10)
Length = 348
Score = 25.0 bits (53), Expect = 7.0
Identities = 20/67 (29%), Positives = 32/67 (46%), Gaps = 6/67 (8%)
Query: 49 QSLRILQTENARLLDEKTDLLNQKEKEVEEKLKNL---AAKEEAFKTLQTEEKKRLKNLI 105
Q L+ + E +LL+ D +KE E K+K L AF+ + +RL+ LI
Sbjct: 268 QCLQRVTPEQRQLLE---DNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELI 324
Query: 106 EENEGIL 112
E++ L
Sbjct: 325 EKHSNRL 331
>pdb|1UBX| Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 25.0 bits (53), Expect = 7.0
Identities = 20/67 (29%), Positives = 32/67 (46%), Gaps = 6/67 (8%)
Query: 49 QSLRILQTENARLLDEKTDLLNQKEKEVEEKLKNL---AAKEEAFKTLQTEEKKRLKNLI 105
Q L+ + E +LL+ D +KE E K+K L AF+ + +RL+ LI
Sbjct: 287 QCLQRVTPEQRQLLE---DNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELI 343
Query: 106 EENEGIL 112
E++ L
Sbjct: 344 EKHSNRL 350
>pdb|1UBY| Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBW| Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBV| Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 25.0 bits (53), Expect = 7.0
Identities = 20/67 (29%), Positives = 32/67 (46%), Gaps = 6/67 (8%)
Query: 49 QSLRILQTENARLLDEKTDLLNQKEKEVEEKLKNL---AAKEEAFKTLQTEEKKRLKNLI 105
Q L+ + E +LL+ D +KE E K+K L AF+ + +RL+ LI
Sbjct: 287 QCLQRVTPEQRQLLE---DNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELI 343
Query: 106 EENEGIL 112
E++ L
Sbjct: 344 EKHSNRL 350
>pdb|1IW7|F Chain F, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|P Chain P, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 423
Score = 25.0 bits (53), Expect = 7.0
Identities = 15/58 (25%), Positives = 32/58 (54%), Gaps = 1/58 (1%)
Query: 52 RILQTENARLLDEKTDLLNQKE-KEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEEN 108
+IL + R + + L+ K +E+++KLK+L + + + + E + ++LIE N
Sbjct: 134 KILGSARVRHIPGLKETLDPKTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEAN 191
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
Length = 150
Score = 25.0 bits (53), Expect = 7.0
Identities = 19/99 (19%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 17 EEAAQELLQCSAIFESKKAELKDDLRRLSEKEQSLRILQTENARLLDEKTDLL------- 69
E A + +A+ ++ +KD L + SL+ + A++LD+ T+ +
Sbjct: 9 ESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKN 68
Query: 70 NQKEKEVEEKLKNLAAKEEAFKTLQTEEKKRLKNLIEEN 108
+ ++++++ + A E+ + L EK R ++ N
Sbjct: 69 HTHQQDIDDLKRQNALLEQQVRAL---EKARSSAQLQTN 104
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-
Trna Synthetase Complexed With Tryptophanyl-5'amp
Length = 328
Score = 24.6 bits (52), Expect = 9.1
Identities = 13/45 (28%), Positives = 26/45 (56%), Gaps = 3/45 (6%)
Query: 78 EKLKNLAAKEEAFKTLQTEEK---KRLKNLIEENEGILREIKQAK 119
+K+ +A+ TL + K K++K+ + ++EG +R K+AK
Sbjct: 191 KKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAK 235
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 24.6 bits (52), Expect = 9.1
Identities = 13/45 (28%), Positives = 26/45 (56%), Gaps = 3/45 (6%)
Query: 78 EKLKNLAAKEEAFKTLQTEEK---KRLKNLIEENEGILREIKQAK 119
+K+ +A+ TL + K K++K+ + ++EG +R K+AK
Sbjct: 191 KKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAK 235
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.308 0.128 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,132,332
Number of Sequences: 13198
Number of extensions: 43934
Number of successful extensions: 219
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 64
length of query: 219
length of database: 2,899,336
effective HSP length: 85
effective length of query: 134
effective length of database: 1,777,506
effective search space: 238185804
effective search space used: 238185804
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (24.6 bits)