BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644886|ref|NP_207056.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(348 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial ... 33 0.048
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra) >gi|20... 31 0.18
pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A C... 28 1.2
pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex... 28 1.2
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crysta... 28 2.0
pdb|1UBY| Structure Of Farnesyl Pyrophosphate Synthetase ... 26 5.9
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 33.1 bits (74), Expect = 0.048
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 128 LDKNALEAGLLKGDKILSINHKKIASFREIRSVVARARGELVLEIERNHQVLEKRLTPKI 187
L A AGL GD IL+I + + + ++ V R + +L ++I R + L +TP++
Sbjct: 265 LGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAV-RTQSQLAVQIRRGRETLTLYVTPEV 323
>pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
Length = 448
Score = 31.2 bits (69), Expect = 0.18
Identities = 15/48 (31%), Positives = 24/48 (49%)
Query: 132 ALEAGLLKGDKILSINHKKIASFREIRSVVARARGELVLEIERNHQVL 179
A + GL KGD I+ N + + + E+R V+ L L I+R +
Sbjct: 396 AAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTI 443
Score = 29.6 bits (65), Expect = 0.53
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 129 DKNALEAGLLKGDKILSINHKKIASFREIRSVV 161
+ +A +AG+ GD I S+N K I+SF +R+ V
Sbjct: 296 NSSAAKAGIKAGDVITSLNGKPISSFAALRAQV 328
>pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKL|A Chain A, 1.6a X-Ray Structure Of Binary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue
pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mn.
pdb|1JKT|A Chain A, Tetragonal Crystal Form Of A Catalytic Domain Of Death-
Associated Protein Kinase
pdb|1JKT|B Chain B, Tetragonal Crystal Form Of A Catalytic Domain Of Death-
Associated Protein Kinase
Length = 294
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 199 EMIRYKAIGIKPDMQKMGVVSYSLFQAFEKALSRFKEGVVLIVDSL 244
E++ Y+ +G++ DM +GV++Y L L K+ + V ++
Sbjct: 186 EIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAV 231
>pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mg
Length = 277
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 199 EMIRYKAIGIKPDMQKMGVVSYSLFQAFEKALSRFKEGVVLIVDSL 244
E++ Y+ +G++ DM +GV++Y L L K+ + V ++
Sbjct: 186 EIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAV 231
>pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 434
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 191 ISDSNDPNEMIRYKAIGIKPDMQKMGVVSYSLFQAFEKALSRFKEGVVLIVDSLRRLIMG 250
+SD+ D E+IR K+ + + + +V L + K L KE V +VD+L ++
Sbjct: 257 LSDAPDSLELIRSKSGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVDTLTAVLQV 316
Query: 251 SSSV 254
++ V
Sbjct: 317 ATGV 320
>pdb|1UBY| Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBW| Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBV| Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/42 (35%), Positives = 21/42 (49%)
Query: 260 VVGIVGALSHANSLSMLLLFGAFLSINLGILNLLPIPALDGA 301
+VGI H N+ ++LL G + I L+ PAL GA
Sbjct: 230 MVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA 271
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.328 0.146 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,817,545
Number of Sequences: 13198
Number of extensions: 74372
Number of successful extensions: 205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 7
length of query: 348
length of database: 2,899,336
effective HSP length: 89
effective length of query: 259
effective length of database: 1,724,714
effective search space: 446700926
effective search space used: 446700926
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)