BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644888|ref|NP_207058.1| adenine specific DNA
methyltransferase (mod) [Helicobacter pylori 26695]
(384 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EG2|A Chain A, Crystal Structure Of Rhodobacter Sphero... 47 4e-06
pdb|1G60|A Chain A, Crystal Structure Of Methyltransferase ... 40 6e-04
pdb|1IRJ|A Chain A, Crystal Structure Of The Mrp14 Complexe... 30 0.35
pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin... 27 3.9
pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein... 27 3.9
pdb|1BOO|A Chain A, Pvuii Dna Methyltransferase (Cytosine-N... 27 3.9
pdb|1MWR|A Chain A, Structure Of Semet Penicillin Binding P... 27 3.9
pdb|1ORD|A Chain A, Mol_id: 1; Molecule: Ornithine Decarbox... 27 5.1
pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthet... 27 5.1
pdb|1C4K|A Chain A, Ornithine Decarboxylase Mutant (Gly121tyr) 27 5.1
pdb|1MDQ| Maltodextrin-Binding Protein (Male322) (Maltose... 26 8.6
pdb|1FRG|L Chain L, Igg2a Fab Fragment (Fab 269) COMPLEXED ... 26 8.6
>pdb|1EG2|A Chain A, Crystal Structure Of Rhodobacter Spheroides (N6 Adenosine)
Methyltransferase (M.Rsri)
Length = 319
Score = 47.0 bits (110), Expect = 4e-06
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 2 HKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDDHADYEKWIKEHLILAKAVL 61
H + + L+ L ++ +S+Q I DPPYN +++ DDH DY W K L A+ VL
Sbjct: 40 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADW---DDHMDYIGWAKRWLAEAERVL 96
Query: 62 KQSGCLFI 69
+G + I
Sbjct: 97 SPTGSIAI 104
Score = 41.6 bits (96), Expect = 2e-04
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 269 SRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTAQAVIEVNRD 328
SR LE++G T KP A+I+ L+ + S +LDFFAGSG TA+ I+ R+
Sbjct: 211 SRLNGNSLERVG----HPTQKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRN 266
>pdb|1G60|A Chain A, Crystal Structure Of Methyltransferase Mboii (Moraxella
Bovis)
pdb|1G60|B Chain B, Crystal Structure Of Methyltransferase Mboii (Moraxella
Bovis)
Length = 260
Score = 39.7 bits (91), Expect = 6e-04
Identities = 32/125 (25%), Positives = 59/125 (46%), Gaps = 10/125 (8%)
Query: 212 EEINLFLEPLKSRGWSSDEKLKELYYQNRL-------IFKNNRPYEKYYLKESQDNCLSV 264
+E LF K+ ++ DE +R+ I KN + +++ + C V
Sbjct: 116 QETILFFSKSKNHTFNYDEVRVPYESTDRIKHASEKGILKNGK---RWFPNPNGRLCGEV 172
Query: 265 LDFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTAQAVIE 324
F S++ + + +K TPKP LI+ ++ S+ + ++LD F GSGTTA +
Sbjct: 173 WHFSSQRHKEKVNGKTVKLTHITPKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKK 232
Query: 325 VNRDY 329
+ R++
Sbjct: 233 LGRNF 237
Score = 39.3 bits (90), Expect = 8e-04
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDDHADY----EKWIKEHLIL 56
++K+ M + L ++E +S+Q IDPPYN ++++ D H ++ +WI + +L
Sbjct: 4 INKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDK--VL 61
Query: 57 AKAVLKQSGCLFI 69
K L + G L+I
Sbjct: 62 DK--LDKDGSLYI 72
>pdb|1IRJ|A Chain A, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|H Chain H, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|B Chain B, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|F Chain F, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|G Chain G, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|C Chain C, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|E Chain E, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|D Chain D, Crystal Structure Of The Mrp14 Complexed With Chaps
Length = 113
Score = 30.4 bits (67), Expect = 0.35
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 147 MRTIKNVFKQKGQ--AQAQLVLKEQIKELSQKEHFNFLKNYNLVDEKGEIYFAKDLSTPS 204
+ TI N F Q + + + KEL +K+ NFLK N +EK + +DL T +
Sbjct: 11 IETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKEN-KNEKVIEHIMEDLDTNA 69
Query: 205 NPRSVAIEEINLFLEPLKSRGWSSDEKLKE 234
+ + ++ EE + + L W+S EK+ E
Sbjct: 70 D-KQLSFEEFIMLMARLT---WASHEKMHE 95
>pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWS|B Chain B, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWT|A Chain A, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution.
pdb|1MWT|B Chain B, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution.
pdb|1MWU|A Chain A, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution.
pdb|1MWU|B Chain B, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution
Length = 646
Score = 26.9 bits (58), Expect = 3.9
Identities = 13/36 (36%), Positives = 18/36 (49%)
Query: 148 RTIKNVFKQKGQAQAQLVLKEQIKELSQKEHFNFLK 183
R IK V K K + AQ +K + + FNF+K
Sbjct: 61 RKIKKVSKNKKRVDAQYKIKTNYGNIDRNVQFNFVK 96
>pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution.
pdb|1MWX|B Chain B, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution
Length = 646
Score = 26.9 bits (58), Expect = 3.9
Identities = 13/36 (36%), Positives = 18/36 (49%)
Query: 148 RTIKNVFKQKGQAQAQLVLKEQIKELSQKEHFNFLK 183
R IK V K K + AQ +K + + FNF+K
Sbjct: 61 RKIKKVSKNKKRVDAQYKIKTNYGNIDRNVQFNFVK 96
>pdb|1BOO|A Chain A, Pvuii Dna Methyltransferase (Cytosine-N4-Specific)
Length = 323
Score = 26.9 bits (58), Expect = 3.9
Identities = 14/66 (21%), Positives = 27/66 (40%)
Query: 4 VFIMEALECLKRIEKESIQTIYIDPPYNTKSSNFEYEDDHADYEKWIKEHLILAKAVLKQ 63
++I ++LE L+ +ESI + PP+ + + +Y W + LK
Sbjct: 17 MYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKP 76
Query: 64 SGCLFI 69
G +
Sbjct: 77 DGSFVV 82
>pdb|1MWR|A Chain A, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution.
pdb|1MWR|B Chain B, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution
Length = 646
Score = 26.9 bits (58), Expect = 3.9
Identities = 13/36 (36%), Positives = 18/36 (49%)
Query: 148 RTIKNVFKQKGQAQAQLVLKEQIKELSQKEHFNFLK 183
R IK V K K + AQ +K + + FNF+K
Sbjct: 61 RKIKKVSKNKKRVDAQYKIKTNYGNIDRNVQFNFVK 96
>pdb|1ORD|A Chain A, Mol_id: 1; Molecule: Ornithine Decarboxylase; Chain: A, B;
Ec: 4.1.1.17
pdb|1ORD|B Chain B, Mol_id: 1; Molecule: Ornithine Decarboxylase; Chain: A, B;
Ec: 4.1.1.17
Length = 730
Score = 26.6 bits (57), Expect = 5.1
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 180 NFLKNYNLVDEKGEIYFAKDLSTPSNPRSVAIEEINLFLEPLKSRGWSSDEKLKELYYQN 239
N+L+++ ++ EK ++ L TP+ + I L+ R D LK++
Sbjct: 522 NYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQ--LQRLIEEDAPLKQVL--P 577
Query: 240 RLIFKNNRPYEKYYLKESQDNCLSVLDFYSRQGTKDLEK 278
+ N Y Y ++E C + DFY T +K
Sbjct: 578 SIYAANEERYNGYTIREL---CQELHDFYKNNNTFTYQK 613
>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|B Chain B, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|C Chain C, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|D Chain D, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
Length = 553
Score = 26.6 bits (57), Expect = 5.1
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 176 KEHFNFLKNYNLVDEKGEIYFAKDLSTPSNPRSVAIEEINLFLEPLKSRGWSSDEKLKEL 235
++H + Y DE G++Y A ++ P I+E P S WS D +++
Sbjct: 137 RDHLGIIPLYMGYDEHGQLYVASEMKA-LVPVCRTIKEF-----PAGSYLWSQDGEIRSY 190
Query: 236 YYQN 239
Y+++
Sbjct: 191 YHRD 194
>pdb|1C4K|A Chain A, Ornithine Decarboxylase Mutant (Gly121tyr)
Length = 730
Score = 26.6 bits (57), Expect = 5.1
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 180 NFLKNYNLVDEKGEIYFAKDLSTPSNPRSVAIEEINLFLEPLKSRGWSSDEKLKELYYQN 239
N+L+++ ++ EK ++ L TP+ + I L+ R D LK++
Sbjct: 522 NYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQ--LQRLIEEDAPLKQVL--P 577
Query: 240 RLIFKNNRPYEKYYLKESQDNCLSVLDFYSRQGTKDLEK 278
+ N Y Y ++E C + DFY T +K
Sbjct: 578 SIYAANEERYNGYTIREL---CQELHDFYKNNNTFTYQK 613
>pdb|1MDQ| Maltodextrin-Binding Protein (Male322) (Maltose-Binding Protein)
Mutant With Ala 301 Replaced By Gly Ser (A301gs)
Complexed With Maltose
Length = 371
Score = 25.8 bits (55), Expect = 8.6
Identities = 15/66 (22%), Positives = 30/66 (44%)
Query: 301 STPKDSIILDFFAGSGTTAQAVIEVNRDYCLNWSFYLCQKEEKIKNNPQAVSILKNKGYQ 360
++P + +F T + + VN+D L S L EE++ +P+ + ++N
Sbjct: 269 ASPNKELAKEFLENYLLTDEGLEAVNKDKPLGGSVALKSYEEELAKDPRIAATMENAQKG 328
Query: 361 NTISNI 366
+ NI
Sbjct: 329 EIMPNI 334
>pdb|1FRG|L Chain L, Igg2a Fab Fragment (Fab 269) COMPLEXED WITH INFLUENZA
Hemagglutinin Ha1 (Strain X47) (Residues 101 - 108)
Length = 217
Score = 25.8 bits (55), Expect = 8.6
Identities = 13/53 (24%), Positives = 26/53 (48%)
Query: 289 KPVALIKYLLLCSTPKDSIILDFFAGSGTTAQAVIEVNRDYCLNWSFYLCQKE 341
KP K L+ ++ ++S + D F+GSG+ + + + + Y CQ +
Sbjct: 45 KPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTITSVQAEDLAIYYCQND 97
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.136 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,185,252
Number of Sequences: 13198
Number of extensions: 89667
Number of successful extensions: 543
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 14
length of query: 384
length of database: 2,899,336
effective HSP length: 90
effective length of query: 294
effective length of database: 1,711,516
effective search space: 503185704
effective search space used: 503185704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)