BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644889|ref|NP_207059.1| hypothetical protein
[Helicobacter pylori 26695]
         (132 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1JAD|A  Chain A, C-Terminal Domain Of Turkey Plc-Beta >g...    26  1.3
pdb|1GP6|A  Chain A, Anthocyanidin Synthase From Arabidopsis...    26  1.7
pdb|1HM6|A  Chain A, X-Ray Structure Of Full-Length Annexin ...    24  5.0
pdb|1AIN|    Annexin I                                             24  5.0
pdb|2BDP|A  Chain A, Crystal Structure Of Bacillus Dna Polym...    24  6.6
pdb|1XWL|    Bacillus Stearothermophilus (Newly Identified S...    24  6.6

>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
 pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
          Length = 251

 Score = 26.2 bits (56), Expect = 1.3
 Identities = 17/78 (21%), Positives = 38/78 (47%), Gaps = 3/78 (3%)

Query: 38  QNKYNKHDNDSFLNELRDSMVALYLDYELINIQKHGLDAKRSSSDEFLEIKQVSFQSQLI 97
           Q +  K  N+S + E+  ++  L    E     +  L+ K++ +   ++ K+   Q + +
Sbjct: 164 QERLKKEINNSHIQEVVQTIKLLT---EKTARYQQKLEEKQAENLRAIQEKEGQLQQEAV 220

Query: 98  KEFEFKMKPIDSKEQELI 115
            E+E K+K +  + QE +
Sbjct: 221 AEYEEKLKTLTVEVQEXV 238



>pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
 pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin
          Length = 356

 Score = 25.8 bits (55), Expect = 1.7
 Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 11/119 (9%)

Query: 17  EPIDRNFITESYQALKPIEEIQNKYNKHDNDSFLNELRDSMVALYLDYELINIQKHGLDA 76
           E I+  F+ E  +    +  I  K  + D++       + +    LD+ ++++  HG+ A
Sbjct: 30  ESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPA 89

Query: 77  K-----RSSSDEFLEIKQVSFQSQLIKEFEFKMKPIDSKEQELINLFNLKFGHFSWENY 130
                 + + +EF  +     +     +   K++   SK      L N   G   WE+Y
Sbjct: 90  DLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSK------LANNASGQLEWEDY 142



>pdb|1HM6|A Chain A, X-Ray Structure Of Full-Length Annexin 1
 pdb|1HM6|B Chain B, X-Ray Structure Of Full-Length Annexin 1
          Length = 346

 Score = 24.3 bits (51), Expect = 5.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 25  TESYQALKPIEEIQNKYNKHDNDSFLN 51
           T SY  L+ + +  +KY+KHD +  L+
Sbjct: 227 TRSYPHLRRVFQKYSKYSKHDMNKVLD 253



>pdb|1AIN|   Annexin I
          Length = 314

 Score = 24.3 bits (51), Expect = 5.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 25  TESYQALKPIEEIQNKYNKHDNDSFLN 51
           T SY  L+ + +   KY+KHD +  L+
Sbjct: 195 TRSYPQLRRVFQKYTKYSKHDMNKVLD 221



>pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna
 pdb|3BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To Duplex Dna After The Incorporation Of +ttp
           By The Enzyme
 pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 11 Base Pairs Of Duplex Dna After Addition
           Of Two Datp Residues
          Length = 580

 Score = 23.9 bits (50), Expect = 6.6
 Identities = 20/91 (21%), Positives = 38/91 (40%), Gaps = 9/91 (9%)

Query: 26  ESYQALKPIEEIQNKYNKH---DNDSFLNELRDSMVALYLDYELINIQKHGLDAKRSSSD 82
           + Y+A++P E +  K  K    D       L     A++       +++  LD  R +  
Sbjct: 121 KQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIW------ELERPFLDELRRNEQ 174

Query: 83  EFLEIKQVSFQSQLIKEFEFKMKPIDSKEQE 113
           + L ++     S ++ E EF    +D+K  E
Sbjct: 175 DRLLVELEQPLSSILAEMEFAGVKVDTKRLE 205



>pdb|1XWL|   Bacillus Stearothermophilus (Newly Identified Strain As Yet
           Unnamed) Dna Polymerase Fragment
          Length = 580

 Score = 23.9 bits (50), Expect = 6.6
 Identities = 20/91 (21%), Positives = 38/91 (40%), Gaps = 9/91 (9%)

Query: 26  ESYQALKPIEEIQNKYNKH---DNDSFLNELRDSMVALYLDYELINIQKHGLDAKRSSSD 82
           + Y+A++P E +  K  K    D       L     A++       +++  LD  R +  
Sbjct: 121 KQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIW------ELERPFLDELRRNEQ 174

Query: 83  EFLEIKQVSFQSQLIKEFEFKMKPIDSKEQE 113
           + L ++     S ++ E EF    +D+K  E
Sbjct: 175 DRLLVELEQPLSSILAEMEFAGVKVDTKRLE 205



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.320    0.138    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 738,895
Number of Sequences: 13198
Number of extensions: 25633
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 6
length of query: 132
length of database: 2,899,336
effective HSP length: 78
effective length of query: 54
effective length of database: 1,869,892
effective search space: 100974168
effective search space used: 100974168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)