BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644659|ref|NP_206828.1| citrate synthase (gltA)
[Helicobacter pylori 26695]
(426 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K3P|A Chain A, Three Dimensional Structure Analysis Of... 347 2e-96
pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furios... 219 6e-58
pdb|1A59| Cold-Active Citrate Synthase 157 3e-39
pdb|1CTS| Citrate Synthase (E.C.4.1.3.7) - Citrate Comple... 100 4e-22
pdb|2CTS| Citrate Synthase (E.C.4.1.3.7) - (CoA, Citrate)... 100 4e-22
pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With T... 100 5e-22
pdb|1CSH| Citrate Synthase (E.C.4.1.3.7) Complexed With O... 100 5e-22
pdb|5CSC|A Chain A, Citrate Synthase (E.C.4.1.3.7) >gi|2311... 97 3e-21
pdb|1CSC| Citrate Synthase (E.C.4.1.3.7)- L-Malate - Carb... 96 8e-21
pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin... 28 2.6
pdb|1QS4|B Chain B, Core Domain Of Hiv-1 Integrase Comlexed... 27 4.4
pdb|1BIU|A Chain A, Hiv-1 Integrase Core Domain Complexed W... 27 4.4
pdb|1EXB|A Chain A, Structure Of The Cytoplasmic Beta Subun... 27 4.4
pdb|1B92|A Chain A, Mobility Of An Hiv-1 Integrase Active S... 27 5.7
pdb|2AHJ|C Chain C, Nitrile Hydratase Complexed With Nitric... 27 5.7
pdb|1BIZ|A Chain A, Hiv-1 Integrase Core Domain >gi|3660035... 26 7.5
pdb|1BIS|B Chain B, Hiv-1 Integrase Core Domain >gi|3660029... 26 7.5
pdb|1BHL| Cacodylated Catalytic Domain Of Hiv-1 Integrase 26 7.5
pdb|1B9D|A Chain A, Mobility Of An Hiv-1 Integrase Active S... 26 7.5
pdb|2ITG| Catalytic Domain Of Hiv-1 Integrase: Ordered Ac... 26 7.5
pdb|1BL3|C Chain C, Catalytic Domain Of Hiv-1 Integrase >gi... 26 7.5
pdb|1HYV|A Chain A, Hiv Integrase Core Domain Complexed Wit... 26 7.5
pdb|1ITG| Hiv-1 Integrase (Catalytic Domain Comprising Re... 26 7.5
pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex Wi... 26 9.8
pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex Wi... 26 9.8
>pdb|1K3P|A Chain A, Three Dimensional Structure Analysis Of The Type Ii
Citrate Synthase From E.Coli
pdb|1K3P|B Chain B, Three Dimensional Structure Analysis Of The Type Ii
Citrate Synthase From E.Coli
Length = 426
Score = 347 bits (889), Expect = 2e-96
Identities = 179/412 (43%), Positives = 258/412 (62%), Gaps = 14/412 (3%)
Query: 15 EFETIESTRGPKAVDFSKLFETTGFFSYDPGYSSTAGCQSKISYVNGKKGELYYRGHRIE 74
E + ++ T G +D L + G F++DPG++STA C+SKI++++G +G L +RG I+
Sbjct: 16 ELDVLKGTLGQDVIDIRTL-GSKGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPID 74
Query: 75 DLVAKYKYVDVCKLLLTGELPKNQDESLEFELELRHRSFVHESLLNMFSAFPSNAHPMAK 134
L Y++VC +LL GE P Q++ EF+ + + +HE + +F AF ++HPMA
Sbjct: 75 QLATDSNYLEVCYILLNGEKP-TQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAV 133
Query: 135 LSSGVSILSTLYSTHQNMHTEEDYQTMARRIVAKIPTLAAICYRNEVGAPIIYPDIARSY 194
+ L+ Y +++ + A R+++K+PT+AA+CY+ +G P +YP SY
Sbjct: 134 MCGITGALAAFYHDSLDVNNPRHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSY 193
Query: 195 VENILFMLRGYPYSRLKHTTQGEVEITPLEVEAFDKILTLHADHSQNASSTTVRNVASTG 254
N L M+ P E+ P+ A D+IL LHADH QNAS++TVR S+G
Sbjct: 194 AGNFLNMMFSTPCE--------PYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSG 245
Query: 255 VHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDVKNVDKYIARVKDKNDNFKLMGFGH 314
+P+A I+AGI++LWG HGGANE L LEEI VK++ ++ R KDKND+F+LMGFGH
Sbjct: 246 ANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFFRRAKDKNDSFRLMGFGH 305
Query: 315 RVYKSYDPRAKILKGLKDE-LHQKGVKMDERLSEIAAKVEEIALKDEYFIERNLYPNVDF 373
RVYK+YDPRA +++ E L + G K D L E+A ++E IAL D YFIE+ LYPNVDF
Sbjct: 306 RVYKNYDPRATVMRETCHEVLKELGTKDD--LLEVAMELENIALNDPYFIEKKLYPNVDF 363
Query: 374 YSGTILRALKIPVRFFTPVFVIGRTVGWCAQLLEHVKSPQARITRPRQVYVG 425
YSG IL+A+ IP FT +F + RTVGW A E + S +I RPRQ+Y G
Sbjct: 364 YSGIILKAMGIPSSMFTVIFAMARTVGWIAHWSE-MHSDGMKIARPRQLYTG 414
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 219 bits (557), Expect = 6e-58
Identities = 139/375 (37%), Positives = 202/375 (53%), Gaps = 28/375 (7%)
Query: 53 QSKISYVNGKKGELYYRGHRIEDLVAKYKYVDVCKLLLTGELPKNQDESLEFELELRHRS 112
Q+ I Y++GK+G+LYYRG+ +E+L + +V LL G+LP + E F+ EL
Sbjct: 12 QTNICYIDGKEGKLYYRGYSVEELAELSTFEEVVYLLWWGKLP-SLSELENFKKELAKSR 70
Query: 113 FVHESLLNMFSAFPSNAHPMAKLSSGVSILSTLYSTHQNMHTEEDYQTMARRIVAKIPTL 172
+ + ++ + A P N HPM L + +S L + + T E+ + + AKIPT+
Sbjct: 71 GLPKEVIEIMEALPKNTHPMGALRTIISYLGNIDDSGDIPVTPEEVYRIGISVTAKIPTI 130
Query: 173 AAICYRNEVGAPIIYPDIARSYVENILFMLRGYPYSRLKHTTQGEVEITPLEVE-AFDKI 231
A YR + G + P S+ N L+ML G E P E E A D
Sbjct: 131 VANWYRIKNGLEYVPPKEKLSHAANFLYMLHG--------------EEPPKEWEKAMDVA 176
Query: 232 LTLHADHSQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDVK 291
L L+A+H NAS+ V V ST Y+AI AGI AL G +HGGA E+ + Q EIG +
Sbjct: 177 LILYAEHEINASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAIKQFMEIGSPE 236
Query: 292 NVDKYIARVKDKNDNFKLMGFGHRVYKSYDPRAKILKGLKDELHQKGVKMDERLSEIAAK 351
V+++ K K+MG GHRVYK+YDPRA+I K +L D++L EIA +
Sbjct: 237 KVEEWF--FKALQQKRKIMGAGHRVYKTYDPRARIFKKYASKLG------DKKLFEIAER 288
Query: 352 VEEIALKDEYFIERNLYPNVDFYSGTILRALKIPVRFFTPVFVIGRTVGWCAQLLEHVKS 411
+E L +EY ++ + NVD++SG + +KIP+ +T +F +GR GW A L E+V
Sbjct: 289 LER--LVEEYLSKKGISINVDYWSGLVFYGMKIPIELYTTIFAMGRIAGWTAHLAEYVS- 345
Query: 412 PQARITRPRQVYVGD 426
RI RPR YVG+
Sbjct: 346 -HNRIIRPRLQYVGE 359
>pdb|1A59| Cold-Active Citrate Synthase
Length = 378
Score = 157 bits (396), Expect = 3e-39
Identities = 119/390 (30%), Positives = 177/390 (44%), Gaps = 35/390 (8%)
Query: 45 GYSSTAGCQSKISYVNGKKGELYYRGHRIEDLVAKYKYVDVCKLLLTGELPKNQDESLEF 104
G + + IS VN L YRG+ +++L AK + V LL ELP + +
Sbjct: 8 GLAGVTADVTAISKVNSDTNSLLYRGYPVQELAAKCSFEQVAYLLWNSELPNDSELKAFV 67
Query: 105 ELELRHRSFVHESLLNMFSAFPSNAHPMAKLSSGVSILSTLYSTHQNMHTEEDYQTMARR 164
E HR + E++ + HPM + VS+L ++ Q+ E + + A
Sbjct: 68 NFERSHRK-LDENVKGAIDLLSTACHPMDVARTAVSVLGANHARAQDSSPEANLEK-AMS 125
Query: 165 IVAKIPTLAAICYRNEVGAPIIYPDIARSYVENILFMLRGYPYSRLKHTTQGEVEITPLE 224
++A P++ A R G +I P Y N L+M T GE E P
Sbjct: 126 LLATFPSVVAYDQRRRRGEELIEPREDLDYSANFLWM------------TFGE-EAAPEV 172
Query: 225 VEAFDKILTLHADHSQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQL 284
VEAF+ + L+A+HS NAS+ T R + ST ++A++ I AL G LHGGANE V+
Sbjct: 173 VEAFNVSMILYAEHSFNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTF 232
Query: 285 EEIGDVKNVDKYIARVKDK-------NDNFKLMGFGHRVYKSYDPRAKILKGLKDEL--H 335
EEIG K+ A + K K+MGFGHRVYK+ D R +K D + H
Sbjct: 233 EEIGIRKDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMIKH 292
Query: 336 QKGVKMDERLSEIAAKVEEIALKDEYFIERNLYPNVDFYSGTILRALKIPVRFFTPVFVI 395
+M + + A +EE + + PN+D+ +G + FTP+F+
Sbjct: 293 YDRPEMLGLYNGLEAAMEE---------AKQIKPNLDYPAGPTYNLMGFDTEMFTPLFIA 343
Query: 396 GRTVGWCAQLLEHVKSPQARITRPRQVYVG 425
R GW A ++E V + RP Y G
Sbjct: 344 ARITGWTAHIMEQV--ADNALIRPLSEYNG 371
>pdb|1CTS| Citrate Synthase (E.C.4.1.3.7) - Citrate Complex
pdb|4CTS|A Chain A, Citrate Synthase (E.C.4.1.3.7) - Oxaloacetate Complex
pdb|4CTS|B Chain B, Citrate Synthase (E.C.4.1.3.7) - Oxaloacetate Complex
Length = 437
Score = 100 bits (248), Expect = 4e-22
Identities = 95/338 (28%), Positives = 158/338 (46%), Gaps = 41/338 (12%)
Query: 88 LLLTGELPKNQDESLEFELELRHRSFVHESLLNMFSAFPSNAHPMAKLSSGVSILST--- 144
LL+TG++P + S E R+ + ++ M FP+N HPM++LS+ ++ L++
Sbjct: 95 LLVTGQIPTEEQVSW-LSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 153
Query: 145 -----LYSTHQNMHTEEDYQTMARRIVAKIPTLAAICYRN--EVGAPIIYPDIARSYVEN 197
H+ + E Y+ ++AK+P +AA YRN G+ I D + N
Sbjct: 154 FARAYAEGIHRTKYWELIYED-CMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHN 212
Query: 198 ILFMLRGYPYSRLKHTTQGEVEITPLEVEAFDKILTLHADHSQ-NASSTTVRNVASTGVH 256
ML GY ++ E LT+H+DH N S+ T V S
Sbjct: 213 FTNML-GYTDAQF--------------TELMRLYLTIHSDHEGGNVSAHTSHLVGSALSD 257
Query: 257 PYAAISAGISALWGHLHGGANEKVLLQLEEIGDVKNVDKYIARVKD-----KNDNFKLMG 311
PY + +A ++ L G LHG AN++VL+ L ++ D +++D N + G
Sbjct: 258 PYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPG 317
Query: 312 FGHRVYKSYDPRAKILK--GLKDELHQKGVKMDERLSEIAAKVEEIALKDEYFIERNLYP 369
+GH V + DPR + LK H K+ +L +I V + L E +N +P
Sbjct: 318 YGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKI---VPNVLL--EQGKAKNPWP 372
Query: 370 NVDFYSGTILRALKI-PVRFFTPVFVIGRTVGWCAQLL 406
NVD +SG +L+ + + ++T +F + R +G AQL+
Sbjct: 373 NVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLI 410
>pdb|2CTS| Citrate Synthase (E.C.4.1.3.7) - (CoA, Citrate) Complex
Length = 437
Score = 100 bits (248), Expect = 4e-22
Identities = 95/338 (28%), Positives = 158/338 (46%), Gaps = 41/338 (12%)
Query: 88 LLLTGELPKNQDESLEFELELRHRSFVHESLLNMFSAFPSNAHPMAKLSSGVSILST--- 144
LL+TG++P + S E R+ + ++ M FP+N HPM++LS+ ++ L++
Sbjct: 95 LLVTGQIPTEEQVSW-LSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 153
Query: 145 -----LYSTHQNMHTEEDYQTMARRIVAKIPTLAAICYRN--EVGAPIIYPDIARSYVEN 197
H+ + E Y+ ++AK+P +AA YRN G+ I D + N
Sbjct: 154 FARAYAEGIHRTKYWELIYED-CMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHN 212
Query: 198 ILFMLRGYPYSRLKHTTQGEVEITPLEVEAFDKILTLHADHSQ-NASSTTVRNVASTGVH 256
ML GY ++ E LT+H+DH N S+ T V S
Sbjct: 213 FTNML-GYTDAQF--------------TELMRLYLTIHSDHEGGNVSAHTSHLVGSALSD 257
Query: 257 PYAAISAGISALWGHLHGGANEKVLLQLEEIGDVKNVDKYIARVKD-----KNDNFKLMG 311
PY + +A ++ L G LHG AN++VL+ L ++ D +++D N + G
Sbjct: 258 PYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPG 317
Query: 312 FGHRVYKSYDPRAKILK--GLKDELHQKGVKMDERLSEIAAKVEEIALKDEYFIERNLYP 369
+GH V + DPR + LK H K+ +L +I V + L E +N +P
Sbjct: 318 YGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKI---VPNVLL--EQGKAKNPWP 372
Query: 370 NVDFYSGTILRALKI-PVRFFTPVFVIGRTVGWCAQLL 406
NVD +SG +L+ + + ++T +F + R +G AQL+
Sbjct: 373 NVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLI 410
>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|1AL6| Chicken Citrate Synthase Complex With N-Hydroxyamido-Coa And
Oxaloacetate
pdb|6CSC|B Chain B, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
Length = 437
Score = 99.8 bits (247), Expect = 5e-22
Identities = 96/338 (28%), Positives = 158/338 (46%), Gaps = 41/338 (12%)
Query: 88 LLLTGELPKNQDESLEFELELRHRSFVHESLLNMFSAFPSNAHPMAKLSSGVSILSTLYS 147
LL+TG++P + S + E R+ + ++ M FP+N HPM++LS+ ++ L++ S
Sbjct: 95 LLVTGQIPTPEQVSWVSK-EWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNS-ES 152
Query: 148 THQNMHTEEDYQTM--------ARRIVAKIPTLAAICYRN--EVGAPIIYPDIARSYVEN 197
+ E +T A ++AK+P +AA YRN G+ I D + N
Sbjct: 153 NFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHN 212
Query: 198 ILFMLRGYPYSRLKHTTQGEVEITPLEVEAFDKILTLHADHSQ-NASSTTVRNVASTGVH 256
ML GY P E LT+H+DH N S+ T V S
Sbjct: 213 FTNML-GYT--------------DPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSD 257
Query: 257 PYAAISAGISALWGHLHGGANEKVLLQLEEIGDVKNVDKYIARVKD-----KNDNFKLMG 311
PY + +A ++ L G LHG AN++VLL L ++ D +++D N + G
Sbjct: 258 PYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPG 317
Query: 312 FGHRVYKSYDPRAKILK--GLKDELHQKGVKMDERLSEIAAKVEEIALKDEYFIERNLYP 369
+GH V + DPR + LK H M + ++++ V + L E +N +P
Sbjct: 318 YGHAVLRKTDPRYTCQREFALK---HLPSDPMFKLVAQLYKIVPNVLL--EQGKAKNPWP 372
Query: 370 NVDFYSGTILRALKI-PVRFFTPVFVIGRTVGWCAQLL 406
NVD +SG +L+ + + ++T +F + R +G AQL+
Sbjct: 373 NVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLI 410
>pdb|1CSH| Citrate Synthase (E.C.4.1.3.7) Complexed With Oxaloacetate And
Amidocarboxymethyldethia Coenzyme A
pdb|1CSI| Citrate Synthase (E.C.4.1.3.7) Complexed With Oxaloacetate And
Carboxymethyldethia Coenzyme A
pdb|1CSR| Mol_id: 1; Molecule: Citrate Synthase; Chain: Null; Ec: 4.1.3.7;
Heterogen: Oxaloacetate; Heterogen:
Alpha-Fluoro-Amidocarboxymethyldethia Coenzyme A
pdb|1CSS| Mol_id: 1; Molecule: Citrate Synthase; Chain: Null; Ec: 4.1.3.7;
Heterogen: Oxaloacetate; Heterogen:
Alpha-Fluoro-Carboxymethyldethia Coenzyme A
pdb|1AMZ| Chicken Citrate Synthase Complex With Nitromethylde-Coa And Malate
Length = 435
Score = 99.8 bits (247), Expect = 5e-22
Identities = 96/338 (28%), Positives = 158/338 (46%), Gaps = 41/338 (12%)
Query: 88 LLLTGELPKNQDESLEFELELRHRSFVHESLLNMFSAFPSNAHPMAKLSSGVSILSTLYS 147
LL+TG++P + S + E R+ + ++ M FP+N HPM++LS+ ++ L++ S
Sbjct: 93 LLVTGQIPTPEQVSWVSK-EWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNS-ES 150
Query: 148 THQNMHTEEDYQTM--------ARRIVAKIPTLAAICYRN--EVGAPIIYPDIARSYVEN 197
+ E +T A ++AK+P +AA YRN G+ I D + N
Sbjct: 151 NFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHN 210
Query: 198 ILFMLRGYPYSRLKHTTQGEVEITPLEVEAFDKILTLHADHSQ-NASSTTVRNVASTGVH 256
ML GY P E LT+H+DH N S+ T V S
Sbjct: 211 FTNML-GYT--------------DPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSD 255
Query: 257 PYAAISAGISALWGHLHGGANEKVLLQLEEIGDVKNVDKYIARVKD-----KNDNFKLMG 311
PY + +A ++ L G LHG AN++VLL L ++ D +++D N + G
Sbjct: 256 PYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPG 315
Query: 312 FGHRVYKSYDPRAKILK--GLKDELHQKGVKMDERLSEIAAKVEEIALKDEYFIERNLYP 369
+GH V + DPR + LK H M + ++++ V + L E +N +P
Sbjct: 316 YGHAVLRKTDPRYTCQREFALK---HLPSDPMFKLVAQLYKIVPNVLL--EQGKAKNPWP 370
Query: 370 NVDFYSGTILRALKI-PVRFFTPVFVIGRTVGWCAQLL 406
NVD +SG +L+ + + ++T +F + R +G AQL+
Sbjct: 371 NVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLI 408
>pdb|5CSC|A Chain A, Citrate Synthase (E.C.4.1.3.7)
pdb|5CSC|B Chain B, Citrate Synthase (E.C.4.1.3.7)
Length = 429
Score = 97.1 bits (240), Expect = 3e-21
Identities = 96/338 (28%), Positives = 156/338 (45%), Gaps = 44/338 (13%)
Query: 88 LLLTGELPKNQDESLEFELELRHRSFVHESLLNMFSAFPSNAHPMAKLSSGVSILSTLYS 147
LL+TG++P S E R+ + ++ M FP+N HPM++LS+ ++ L++ S
Sbjct: 94 LLVTGQIPTGAQVSW-LSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNS-ES 151
Query: 148 THQNMHTEEDYQTM--------ARRIVAKIPTLAAICYRN--EVGAPIIYPDIARSYVEN 197
+ E +T A ++AK+P +AA YRN G+ I D + N
Sbjct: 152 NFARAYAEGILRTKYWEMVYESAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHN 211
Query: 198 ILFMLRGYPYSRLKHTTQGEVEITPLEVEAFDKILTLHADHSQ-NASSTTVRNVASTGVH 256
ML GY ++ E LT+H+DH N S+ T V S
Sbjct: 212 FTNML-GYTDAQF--------------TELMRLYLTIHSDHEGGNVSAHTSHLVGSALSD 256
Query: 257 PYAAISAGISALWGHLHGGANEKVLLQLEEIGDVKNVDKYIARVKD-----KNDNFKLMG 311
PY + +A ++ L G LHG AN++VL L ++ D A ++D N + G
Sbjct: 257 PYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAAGAD---ASLRDYIWNTLNSGRVVPG 313
Query: 312 FGHRVYKSYDPRAKILK--GLKDELHQKGVKMDERLSEIAAKVEEIALKDEYFIERNLYP 369
+GH V + DPR + LK H G M + ++++ V + L E N +P
Sbjct: 314 YGHAVLRKTDPRYTCQREFALK---HLPGDPMFKLVAQLYKIVPNVLL--EQGAAANPWP 368
Query: 370 NVDFYSGTILRALKI-PVRFFTPVFVIGRTVGWCAQLL 406
NVD +SG +L+ + + ++T +F + R +G AQL+
Sbjct: 369 NVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLI 406
>pdb|1CSC| Citrate Synthase (E.C.4.1.3.7)- L-Malate - Carboxymethyl Coenzyme
A Complex
pdb|2CSC| Citrate Synthase (E.C.4.1.3.7)- D-Malate - Carboxymethyl Coenzyme
A Complex
pdb|3CSC| Citrate Synthase (E.C.4.1.3.7)- L-Malate - Acetyl Coenzyme A
Complex
pdb|4CSC| Citrate Synthase (E.C.4.1.3.7)- D-Malate - Acetyl Coenzyme A
Complex
pdb|5CTS| Citrate Synthase (E.C.4.1.3.7)- Oxaloacetate - Carboxymethyl
Coenzyme A Complex
pdb|6CTS| Citrate Synthase (E.C.4.1.3.7) - Citrylthioether - Coenzyme A
Complex
Length = 433
Score = 95.9 bits (237), Expect = 8e-21
Identities = 95/338 (28%), Positives = 155/338 (45%), Gaps = 41/338 (12%)
Query: 88 LLLTGELPKNQDESLEFELELRHRSFVHESLLNMFSAFPSNAHPMAKLSSGVSILSTLYS 147
LL+TG++P S E R+ + ++ M FP+N HPM++LS+ ++ L++ S
Sbjct: 95 LLVTGQIPTGAQVSW-LSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNS-ES 152
Query: 148 THQNMHTEEDYQTM--------ARRIVAKIPTLAAICYRN--EVGAPIIYPDIARSYVEN 197
+ E +T A ++AK+P +AA YRN G+ I D + N
Sbjct: 153 NFARAYAEGILRTKYWEMVYESAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHN 212
Query: 198 ILFMLRGYPYSRLKHTTQGEVEITPLEVEAFDKILTLHADHSQ-NASSTTVRNVASTGVH 256
ML GY ++ E LT+H+DH N S+ T V S
Sbjct: 213 FTNML-GYTDAQF--------------TELMRLYLTIHSDHEGGNVSAHTSHLVGSALSD 257
Query: 257 PYAAISAGISALWGHLHGGANEKVLLQLEEIGDVKNVDKYIARVKD-----KNDNFKLMG 311
PY + +A ++ L G LHG AN++VL L ++ A ++D N + G
Sbjct: 258 PYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAXXXAGADASLRDYIWNTLNSGRVVPG 317
Query: 312 FGHRVYKSYDPRAKILK--GLKDELHQKGVKMDERLSEIAAKVEEIALKDEYFIERNLYP 369
+GH V + DPR + LK H G M + ++++ V + L E N +P
Sbjct: 318 YGHAVLRKTDPRYTCQREFALK---HLPGDPMFKLVAQLYKIVPNVLL--EQGAAANPWP 372
Query: 370 NVDFYSGTILRALKI-PVRFFTPVFVIGRTVGWCAQLL 406
NVD +SG +L+ + + ++T +F + R +G AQL+
Sbjct: 373 NVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLI 410
>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 133
Score = 27.7 bits (60), Expect = 2.6
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 298 ARVKDKNDNFKLMGFGHRVYKSYDPRAKILKGLKDELHQKGVKMDERLSEI 348
A +KD ++ +G G + K+++ + +K K+EL KM E L I
Sbjct: 64 AELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAI 114
>pdb|1QS4|B Chain B, Core Domain Of Hiv-1 Integrase Comlexed With Mg++ And
1-(5-
Chloroindol-3-Yl)-3-Hydroxy-3-(2h-Tetrazol-5-Yl)-
Propenone
pdb|1QS4|C Chain C, Core Domain Of Hiv-1 Integrase Comlexed With Mg++ And
1-(5-
Chloroindol-3-Yl)-3-Hydroxy-3-(2h-Tetrazol-5-Yl)-
Propenone
pdb|1QS4|A Chain A, Core Domain Of Hiv-1 Integrase Comlexed With Mg++ And
1-(5-
Chloroindol-3-Yl)-3-Hydroxy-3-(2h-Tetrazol-5-Yl)-
Propenone
Length = 154
Score = 26.9 bits (58), Expect = 4.4
Identities = 19/78 (24%), Positives = 36/78 (45%), Gaps = 14/78 (17%)
Query: 231 ILTLHADHSQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDV 290
+ T+H D+ N +STTV+ G GI +G + ++ V+ +
Sbjct: 55 VKTVHTDNGSNFTSTTVKAACEWG---------GIKQEFGIPYNPQSQGVIESMN----- 100
Query: 291 KNVDKYIARVKDKNDNFK 308
K + K I +V+D+ ++ K
Sbjct: 101 KELKKIIGQVRDQAEHLK 118
>pdb|1BIU|A Chain A, Hiv-1 Integrase Core Domain Complexed With Mg++
pdb|1BIU|B Chain B, Hiv-1 Integrase Core Domain Complexed With Mg++
pdb|1BIU|C Chain C, Hiv-1 Integrase Core Domain Complexed With Mg++
Length = 166
Score = 26.9 bits (58), Expect = 4.4
Identities = 19/78 (24%), Positives = 36/78 (45%), Gaps = 14/78 (17%)
Query: 231 ILTLHADHSQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDV 290
+ T+H D+ N +STTV+ G GI +G + ++ V+ +
Sbjct: 64 VKTVHTDNGSNFTSTTVKAACEWG---------GIKQEFGIPYNPQSQGVIESMN----- 109
Query: 291 KNVDKYIARVKDKNDNFK 308
K + K I +V+D+ ++ K
Sbjct: 110 KELKKIIGQVRDQAEHLK 127
>pdb|1EXB|A Chain A, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of
Voltage-Dependent K Channels
Length = 332
Score = 26.9 bits (58), Expect = 4.4
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 19/73 (26%)
Query: 156 EDYQTMARRIVAKIPTLA-AICYRNE------------------VGAPIIYPDIARSYVE 196
++ Q +A R+ +P LA A C RNE +GA + P ++ S V
Sbjct: 255 KELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQVLPKLSSSIVH 314
Query: 197 NILFMLRGYPYSR 209
I +L PYS+
Sbjct: 315 EIDSILGNKPYSK 327
>pdb|1B92|A Chain A, Mobility Of An Hiv-1 Integrase Active Site Loop Is
Correlated With Catalytic Activity
Length = 163
Score = 26.6 bits (57), Expect = 5.7
Identities = 20/78 (25%), Positives = 37/78 (46%), Gaps = 14/78 (17%)
Query: 231 ILTLHADHSQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDV 290
+ T+H D+ N +STTV+ A AGI +G + ++ V+ +
Sbjct: 61 VKTVHTDNGSNFTSTTVK---------AACWWAGIKQEFGIPYNPQSQAVIESMN----- 106
Query: 291 KNVDKYIARVKDKNDNFK 308
K + K I +V+D+ ++ K
Sbjct: 107 KELKKIIGQVRDQAEHLK 124
>pdb|2AHJ|C Chain C, Nitrile Hydratase Complexed With Nitric Oxide
pdb|2AHJ|A Chain A, Nitrile Hydratase Complexed With Nitric Oxide
Length = 206
Score = 26.6 bits (57), Expect = 5.7
Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 8/139 (5%)
Query: 225 VEAFDKILTLHADHSQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQL 284
VE + K T D S + V + ++ G +A+ + + G + ++ +
Sbjct: 40 VEGWKK--TFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAAVAQYGYLGPQGEYIVAV 97
Query: 285 EEIGDVKNVDKYIARVKDKNDNFKLMGFGHRVYKSYDPRAKILKGLKDELHQKGVKMDER 344
E+ +KNV I + ++G YKS++ RA++++ + L + G E
Sbjct: 98 EDTPTLKNV---IVCSLXSXTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGT---EI 151
Query: 345 LSEIAAKVEEIALKDEYFI 363
S+I +V + + Y +
Sbjct: 152 ASDIEIRVYDTTAETRYMV 170
>pdb|1BIZ|A Chain A, Hiv-1 Integrase Core Domain
pdb|1BIZ|B Chain B, Hiv-1 Integrase Core Domain
Length = 166
Score = 26.2 bits (56), Expect = 7.5
Identities = 20/78 (25%), Positives = 37/78 (46%), Gaps = 14/78 (17%)
Query: 231 ILTLHADHSQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDV 290
+ T+H D+ N +STTV+ A AGI +G + ++ V+ +
Sbjct: 64 VKTVHTDNGSNFTSTTVK---------AACWWAGIKQEFGIPYNPQSQGVIESMN----- 109
Query: 291 KNVDKYIARVKDKNDNFK 308
K + K I +V+D+ ++ K
Sbjct: 110 KELKKIIGQVRDQAEHLK 127
>pdb|1BIS|B Chain B, Hiv-1 Integrase Core Domain
pdb|1BIS|A Chain A, Hiv-1 Integrase Core Domain
Length = 166
Score = 26.2 bits (56), Expect = 7.5
Identities = 20/78 (25%), Positives = 37/78 (46%), Gaps = 14/78 (17%)
Query: 231 ILTLHADHSQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDV 290
+ T+H D+ N +STTV+ A AGI +G + ++ V+ +
Sbjct: 64 VKTVHTDNGSNFTSTTVK---------AACEWAGIKQEFGIPYNPQSQGVIESMN----- 109
Query: 291 KNVDKYIARVKDKNDNFK 308
K + K I +V+D+ ++ K
Sbjct: 110 KELKKIIGQVRDQAEHLK 127
>pdb|1BHL| Cacodylated Catalytic Domain Of Hiv-1 Integrase
Length = 151
Score = 26.2 bits (56), Expect = 7.5
Identities = 20/78 (25%), Positives = 37/78 (46%), Gaps = 14/78 (17%)
Query: 231 ILTLHADHSQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDV 290
+ T+H D+ N +STTV+ A AGI +G + ++ V+ +
Sbjct: 54 VKTVHTDNGSNFTSTTVK---------AAXWWAGIKQEFGIPYNPQSQGVIESMN----- 99
Query: 291 KNVDKYIARVKDKNDNFK 308
K + K I +V+D+ ++ K
Sbjct: 100 KELKKIIGQVRDQAEHLK 117
>pdb|1B9D|A Chain A, Mobility Of An Hiv-1 Integrase Active Site Loop Is
Correlated With Catalytic Activity
Length = 163
Score = 26.2 bits (56), Expect = 7.5
Identities = 20/78 (25%), Positives = 37/78 (46%), Gaps = 14/78 (17%)
Query: 231 ILTLHADHSQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDV 290
+ T+H D+ N +STTV+ A AGI +G + ++ V+ +
Sbjct: 61 VKTVHTDNGSNFTSTTVK---------AACWWAGIKQEFGIPYNPQSQGVIESMN----- 106
Query: 291 KNVDKYIARVKDKNDNFK 308
K + K I +V+D+ ++ K
Sbjct: 107 KELKKIIGQVRDQAEHLK 124
>pdb|2ITG| Catalytic Domain Of Hiv-1 Integrase: Ordered Active Site In The
F185h Construct
Length = 163
Score = 26.2 bits (56), Expect = 7.5
Identities = 20/78 (25%), Positives = 37/78 (46%), Gaps = 14/78 (17%)
Query: 231 ILTLHADHSQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDV 290
+ T+H D+ N +STTV+ A AGI +G + ++ V+ +
Sbjct: 61 VKTVHTDNGSNFTSTTVK---------AACWWAGIKQEFGIPYNPQSQGVIESMN----- 106
Query: 291 KNVDKYIARVKDKNDNFK 308
K + K I +V+D+ ++ K
Sbjct: 107 KELKKIIGQVRDQAEHLK 124
>pdb|1BL3|C Chain C, Catalytic Domain Of Hiv-1 Integrase
pdb|1BI4|C Chain C, Catalytic Domain Of Hiv-1 Integrase
pdb|1BL3|B Chain B, Catalytic Domain Of Hiv-1 Integrase
pdb|1BL3|A Chain A, Catalytic Domain Of Hiv-1 Integrase
pdb|1BI4|A Chain A, Catalytic Domain Of Hiv-1 Integrase
Length = 160
Score = 26.2 bits (56), Expect = 7.5
Identities = 20/78 (25%), Positives = 37/78 (46%), Gaps = 14/78 (17%)
Query: 231 ILTLHADHSQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDV 290
+ T+H D+ N +STTV+ A AGI +G + ++ V+ +
Sbjct: 61 VKTVHTDNGSNFTSTTVK---------AACWWAGIKQEFGIPYNPQSQGVIESMN----- 106
Query: 291 KNVDKYIARVKDKNDNFK 308
K + K I +V+D+ ++ K
Sbjct: 107 KELKKIIGQVRDQAEHLK 124
>pdb|1HYV|A Chain A, Hiv Integrase Core Domain Complexed With Tetraphenyl
Arsonium
pdb|1HYZ|A Chain A, Hiv Integrase Core Domain Complexed With A Derivative Of
Tetraphenyl Arsonium
Length = 166
Score = 26.2 bits (56), Expect = 7.5
Identities = 20/78 (25%), Positives = 37/78 (46%), Gaps = 14/78 (17%)
Query: 231 ILTLHADHSQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDV 290
+ T+H D+ N +STTV+ A AGI +G + ++ V+ +
Sbjct: 64 VKTVHTDNGSNFTSTTVK---------AAXWWAGIKQEFGIPYNPQSQGVIESMN----- 109
Query: 291 KNVDKYIARVKDKNDNFK 308
K + K I +V+D+ ++ K
Sbjct: 110 KELKKIIGQVRDQAEHLK 127
>pdb|1ITG| Hiv-1 Integrase (Catalytic Domain Comprising Residues 50 - 212)
Mutant With Gly-Ser-His Appended To The N-Terminus And
Phe 185 Replaced By Lys (Ins(47-49),F185k)
Length = 166
Score = 26.2 bits (56), Expect = 7.5
Identities = 20/78 (25%), Positives = 37/78 (46%), Gaps = 14/78 (17%)
Query: 231 ILTLHADHSQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDV 290
+ T+H D+ N +STTV+ A AGI +G + ++ V+ +
Sbjct: 64 VKTVHTDNGSNFTSTTVK---------AACWWAGIKQEFGIPYNPQSQGVIESMN----- 109
Query: 291 KNVDKYIARVKDKNDNFK 308
K + K I +V+D+ ++ K
Sbjct: 110 KELKKIIGQVRDQAEHLK 127
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-Adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 25.8 bits (55), Expect = 9.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 157 DYQTMARRIVAKIPTLAAICYRNE 180
DY+++AR++ +K+PTL I E
Sbjct: 136 DYRSLARQVQSKLPTLKNIIVAGE 159
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 25.8 bits (55), Expect = 9.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 157 DYQTMARRIVAKIPTLAAICYRNE 180
DY+++AR++ +K+PTL I E
Sbjct: 136 DYRSLARQVQSKLPTLKNIIVAGE 159
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.136 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,456,409
Number of Sequences: 13198
Number of extensions: 102083
Number of successful extensions: 309
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 25
length of query: 426
length of database: 2,899,336
effective HSP length: 91
effective length of query: 335
effective length of database: 1,698,318
effective search space: 568936530
effective search space used: 568936530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)