BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644892|ref|NP_207062.1| ATP-dependent protease
binding subunit (clpB) [Helicobacter pylori 26695]
(856 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Ch... 271 3e-73
pdb|1JBK|A Chain A, Crystal Structure Of The First Nuceloti... 263 6e-71
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 47 7e-06
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptida... 46 2e-05
pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Loc... 46 2e-05
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Cha... 46 2e-05
pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfon... 45 4e-05
pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomet... 45 4e-05
pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And ... 39 0.002
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 39 0.003
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 38 0.004
pdb|1JR3|A Chain A, Crystal Structure Of The Processivity C... 37 0.012
pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader S... 36 0.016
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 35 0.035
pdb|1K6K|A Chain A, Crystal Structure Of Clpa, An Aaa+ Chap... 35 0.035
pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of ... 34 0.060
pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase C... 33 0.10
pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus 33 0.10
pdb|1NKS|A Chain A, Adenylate Kinase From Sulfolobus Acidoc... 32 0.30
pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dn... 30 0.87
pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 30 0.87
pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 30 0.87
pdb|1K9X|A Chain A, Structure Of Pyrococcus Furiosus Carbox... 30 1.5
pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter P... 30 1.5
pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v 29 1.9
pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegi... 29 2.5
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 29 2.5
pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus ... 29 2.5
pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C... 28 3.3
pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And F... 28 3.3
pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Pe... 28 3.3
pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b 28 4.3
pdb|1LKV|X Chain X, Crystal Structure Of The Middle And C-T... 28 4.3
pdb|1PTV|A Chain A, Crystal Structure Of Protein Tyrosine P... 28 4.3
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 28 4.3
pdb|1EEN|A Chain A, Crystal Structure Of Protein Tyrosine P... 28 4.3
pdb|1A5Y| Protein Tyrosine Phosphatase 1b Cysteinyl-Phosp... 28 4.3
pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine P... 28 4.3
pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Sub... 28 4.3
pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed... 28 4.3
pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed ... 28 4.3
pdb|1AAX| Crystal Structure Of Protein Tyrosine Phosphata... 28 4.3
pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine P... 28 4.3
pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed Wi... 28 4.3
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 28 4.3
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 28 4.3
pdb|2HNQ| Protein-Tyrosine Phosphatase 1b (Human) (E.C.3.... 28 4.3
pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine P... 28 4.3
pdb|1PTU|A Chain A, Crystal Structure Of Protein Tyrosine P... 28 4.3
pdb|1IXR|C Chain C, Ruva-Ruvb Complex 28 5.6
pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva D... 28 5.6
pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermoph... 28 5.6
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 27 7.3
pdb|1HNF| Cd2 (Human) 27 7.3
pdb|1GYA| N-Glycan And Polypeptide Nmr Solution Structure... 27 7.3
pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthet... 27 9.6
pdb|1M1J|B Chain B, Crystal Structure Of Native Chicken Fib... 27 9.6
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 27 9.6
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
Length = 758
Score = 271 bits (692), Expect = 3e-73
Identities = 166/461 (36%), Positives = 266/461 (57%), Gaps = 28/461 (6%)
Query: 7 MTDQLHETLDSALALALHHKNAEVTPMHMLFAMLNNSQGILIQALQKMPVDIQALRLSVQ 66
+ +L +L+ A A A H++ +T H+L A+L+N +AL+ VD+ ALR ++
Sbjct: 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAR--EALEACSVDLVALRQELE 59
Query: 67 SELNKFAKVSQISKQ--NIQLNQALIQSLENAQGLMAKRGDSFIATDVYLLANMGLFESV 124
+ + + V S++ + Q + + L+ A + G + + L+A ES
Sbjct: 60 AFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQ 119
Query: 125 LKPYLDAKELQKT------LESLRKGRTIQDKNDDSNLES---------LEKFGIDLTQK 169
L E+ + RK Q + S S LE F +L Q
Sbjct: 120 AAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERLENFTTNLNQL 179
Query: 170 ALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIMNKEVPKT 229
A +DP+IGR++E+ R +Q+L R+ KNNP+L+GE GVGKTA+ EGLA RI+ +VP+
Sbjct: 180 ARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV 239
Query: 230 LLNKRVIALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGG 289
+ + + +LD+ L+AG KYRG+FE+R K +++++++ N ILFIDEIHTI+GAGA+ GG
Sbjct: 240 MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG 299
Query: 290 -MDAANILKPALARGELHTIGATTLKEYRKYFEKDMALQRRFQPILLNEPSINEALQILR 348
+DAAN++KP L+ G++ IG+TT +E+ FEKD AL RRFQ I + EPSI E +QI+
Sbjct: 300 QVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIIN 359
Query: 349 GLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKMQMESEPAK 408
GLK E HH++ A+ A+ +L+ +YI DR LPDKAID+IDE A+ ++
Sbjct: 360 GLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLM------P 413
Query: 409 LSSVKRSIQRLEMEKQALEMEK--KESNAKRMQEILKELSD 447
+S K+++ ++E + + ++S ++ ++ LK L D
Sbjct: 414 VSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGD 454
Score = 256 bits (654), Expect = 7e-69
Identities = 135/327 (41%), Positives = 213/327 (64%), Gaps = 19/327 (5%)
Query: 535 NIAEIVSQWTHIPVQKMLQSEKNRVLNIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDS 594
+I +V++ IP + + QS+++ + N+ L+ V GQ+KAI+A+ +AIK +AGL
Sbjct: 425 DIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHE 484
Query: 595 NKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYLEKHAMSRLIGAAPGYV 654
+KP+GSFLF GPTGVGKTE L++ L L+R DMSEY+E+H +SRLIGA PGYV
Sbjct: 485 HKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYV 541
Query: 655 GYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTIL 714
G+++GG LT+AV + P++V+LLDE+EKAHPDVFN+LLQV+D G LTD+ G + DF+N +L
Sbjct: 542 GFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVL 601
Query: 715 ILTSNV--------ASGALLEENLSEAEKQKAIKESLRQFFKPEFLNRLDEIISFNALDS 766
++T+N + G + ++N ++A E +++ F PEF NRLD II F+ L +
Sbjct: 602 VMTTNAGVRETERKSIGLIHQDNSTDA------MEEIKKIFTPEFRNRLDNIIWFDHLST 655
Query: 767 HAVINIVGILFENIQKKALERGINITLDEEAKELIAEAGFDRFYGARPLKRALYEMVEDK 826
+ +V +Q + ++G+++ + +EA+ +AE G+DR GARP+ R + + ++
Sbjct: 656 DVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKP 715
Query: 827 LAELILEDKVKEND--SVAFVVENNEI 851
LA +L + + +VA E NE+
Sbjct: 716 LANELLFGSLVDGGQVTVALDKEKNEL 742
Score = 28.5 bits (62), Expect = 3.3
Identities = 19/68 (27%), Positives = 33/68 (47%), Gaps = 9/68 (13%)
Query: 570 VVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNL 629
++G+EK ++ + + R + N P L +G +GVGKT A+ LA + D
Sbjct: 188 LIGREKELERAIQVLCRRR-----KNNP----LLVGESGVGKTAIAEGLAWRIVQGDVPE 238
Query: 630 IRIDMSEY 637
+ D + Y
Sbjct: 239 VMADCTIY 246
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 263 bits (672), Expect = 6e-71
Identities = 128/195 (65%), Positives = 165/195 (83%), Gaps = 1/195 (0%)
Query: 155 NLESLEKFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVV 214
++++L+K+ IDLT++A + KLDPVIGRDEEI R +Q+L R+TKNNP+L+GEPGVGKTA+V
Sbjct: 1 HMQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60
Query: 215 EGLAQRIMNKEVPKTLLNKRVIALDLSLLVAGAKYRGEFEERLKKVIEEV-KKSANVILF 273
EGLAQRI+N EVP+ L +RV+ALD+ LVAGAKYRGEFEERLK V+ ++ K+ NVILF
Sbjct: 61 EGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF 120
Query: 274 IDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYFEKDMALQRRFQPI 333
IDE+HT+VGAG ++G MDA N+LKPALARGELH +GATTL EYR+Y EKD AL+RRFQ +
Sbjct: 121 IDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKV 180
Query: 334 LLNEPSINEALQILR 348
+ EPS+ + + ILR
Sbjct: 181 FVAEPSVEDTIAILR 195
Score = 26.9 bits (58), Expect = 9.6
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 27/119 (22%)
Query: 570 VVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSD--- 626
V+G+++ I+ + ++R N P+ +G GVGKT + LAQ + + +
Sbjct: 24 VIGRDEEIRRTIQVLQRRT-----KNNPV----LIGEPGVGKTAIVEGLAQRIINGEVPE 74
Query: 627 ----KNLIRIDMSEYLEKHAMSRLIGAAPGYVGYEE--GGQLTEAVRRKPYSVVLLDEV 679
+ ++ +D M L+ A +EE G L + +++ ++ +DE+
Sbjct: 75 GLKGRRVLALD---------MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDEL 124
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 47.4 bits (111), Expect = 7e-06
Identities = 37/161 (22%), Positives = 79/161 (48%), Gaps = 13/161 (8%)
Query: 412 VKRSIQRLEMEKQALEMEKKESNAKRMQEILKEL----SDLKEEKIQLEAQFENEKEVFK 467
+K + Q EM+ + E+++ + ++ + LKEL + L EEK L+ + + E E++
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909
Query: 468 EISRLKMEMESLKKEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALL 527
E +++ + + K+E E E+E ++I E +++ ++LQ + + MQQ L
Sbjct: 910 EAEEMRVRLAAKKQELEEILH--------EME-ARIEEEEERSQQLQAEKKKMQQQMLDL 960
Query: 528 QNALTENNIAEIVSQWTHIPVQKMLQSEKNRVLNIESELQK 568
+ L E A Q + ++ ++ +L +E + K
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Score = 47.0 bits (110), Expect = 9e-06
Identities = 56/221 (25%), Positives = 103/221 (46%), Gaps = 46/221 (20%)
Query: 392 DEGAAQLKMQMESEPAKLSSVKRSIQRLEMEKQALEMEK--KESNAKRMQE--------- 440
+E + QL+ + + ++ ++ ++ E +Q L++EK + K+M++
Sbjct: 940 EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999
Query: 441 --ILKELSDLKEEKIQLEAQFENEKEVFKEISRLKMEMESL--------------KKEAE 484
+ KE L+E L E+E K +++LK + ES+ ++E E
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE 1059
Query: 485 RFKRNGD------YQQAGEIEYSKIPENK----KKEEELQRKWEAMQQNGALLQNALTEN 534
+ KR + ++Q E++ ++I E K KKEEELQ ++ + NAL
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQ-AQIAELKAQLAKKEEELQAALARLEDETSQKNNAL--K 1116
Query: 535 NIAEIVSQWTHI-PVQKMLQSEKNRVLNIESELQKRVVGQE 574
I E+ S HI +Q+ L+SEK ++E QKR + +E
Sbjct: 1117 KIRELES---HISDLQEDLESEK--AARNKAEKQKRDLSEE 1152
Score = 43.9 bits (102), Expect = 8e-05
Identities = 50/211 (23%), Positives = 98/211 (45%), Gaps = 31/211 (14%)
Query: 392 DEGAAQLKMQMESE---PAKLSSVKRSIQRLEMEKQALEMEKK-ESNAKRMQEILKELSD 447
++ Q K+Q E+E A+ V+ + ++ E+E+ EME + E +R Q++ E
Sbjct: 893 EKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK 952
Query: 448 LKEEKIQLEAQFENEKEVFKEISRLKMEMESLKKEAERFKRNGDYQQAGEIEYSKIPENK 507
++++ + LE Q E E E +R K+++E + + + K+ D E + +K+ + +
Sbjct: 953 MQQQMLDLEEQLEEE-----EAARQKLQLEKVTADG-KIKKMEDDILIMEDQNNKLTKER 1006
Query: 508 KKEEELQRKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVLNIESELQ 567
K EE + L N E A K L KN+ ++ SEL+
Sbjct: 1007 KLLEE---------RVSDLTTNLAEEEEKA------------KNLTKLKNKHESMISELE 1045
Query: 568 KRVVGQEKAIKAIAKAIKRNKAGLSDSNKPI 598
R+ +EK+ + + K ++ + SD ++ I
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGESSDLHEQI 1076
Score = 33.9 bits (76), Expect = 0.078
Identities = 23/93 (24%), Positives = 48/93 (50%), Gaps = 10/93 (10%)
Query: 395 AAQLKMQMESEPAKLSSVKRSIQRLEMEKQAL------EMEKKESNAKRMQEILKELSDL 448
++ L Q+ A+++ +K + + E E QA E +K + K+++E+ +SDL
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128
Query: 449 KE----EKIQLEAQFENEKEVFKEISRLKMEME 477
+E EK + ++++ +E+ LK E+E
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSEELEALKTELE 1161
>pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
Length = 443
Score = 45.8 bits (107), Expect = 2e-05
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 21/102 (20%)
Query: 562 IESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIG------SFLFLGPTGVGKTESA 615
I SEL K ++GQ+ A +++A A+ RN+ N+ + + L +GPTGVGKTE A
Sbjct: 9 IVSELDKHIIGQDNAKRSVAIAL-RNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIA 67
Query: 616 KALAQFLFDSDKNLIRIDMSEYLEKHAMSRLIGAAPGYVGYE 657
+ LA+ ++ I+++ +++ E GYVG E
Sbjct: 68 RRLAKL---ANAPFIKVEATKFTE-----------VGYVGKE 95
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 45.8 bits (107), Expect = 2e-05
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 21/102 (20%)
Query: 562 IESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIG------SFLFLGPTGVGKTESA 615
I SEL K ++GQ+ A +++A A+ RN+ N+ + + L +GPTGVGKTE A
Sbjct: 8 IVSELDKHIIGQDNAKRSVAIAL-RNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIA 66
Query: 616 KALAQFLFDSDKNLIRIDMSEYLEKHAMSRLIGAAPGYVGYE 657
+ LA+ ++ I+++ +++ E GYVG E
Sbjct: 67 RRLAKL---ANAPFIKVEATKFTE-----------VGYVGKE 94
>pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
Length = 449
Score = 45.8 bits (107), Expect = 2e-05
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 21/102 (20%)
Query: 562 IESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIG------SFLFLGPTGVGKTESA 615
I SEL K ++GQ+ A +++A A+ RN+ N+ + + L +GPTGVGKTE A
Sbjct: 15 IVSELDKHIIGQDNAKRSVAIAL-RNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIA 73
Query: 616 KALAQFLFDSDKNLIRIDMSEYLEKHAMSRLIGAAPGYVGYE 657
+ LA+ ++ I+++ +++ E GYVG E
Sbjct: 74 RRLAKL---ANAPFIKVEATKFTE-----------VGYVGKE 101
>pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
Length = 444
Score = 44.7 bits (104), Expect = 4e-05
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 21/102 (20%)
Query: 562 IESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIG------SFLFLGPTGVGKTESA 615
I SEL + ++GQ A +A+A A+ RN+ +P+ + L +GPTGVGKTE A
Sbjct: 9 IVSELDQHIIGQADAKRAVAIAL-RNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67
Query: 616 KALAQFLFDSDKNLIRIDMSEYLEKHAMSRLIGAAPGYVGYE 657
+ LA+ ++ I+++ +++ E GYVG E
Sbjct: 68 RRLAKL---ANAPFIKVEATKFTE-----------VGYVGKE 95
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 44.7 bits (104), Expect = 4e-05
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 21/102 (20%)
Query: 562 IESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIG------SFLFLGPTGVGKTESA 615
I SEL + ++GQ A +A+A A+ RN+ +P+ + L +GPTGVGKTE A
Sbjct: 9 IVSELDQHIIGQADAKRAVAIAL-RNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIA 67
Query: 616 KALAQFLFDSDKNLIRIDMSEYLEKHAMSRLIGAAPGYVGYE 657
+ LA+ ++ I+++ +++ E GYVG E
Sbjct: 68 RRLAKL---ANAPFIKVEATKFTE-----------VGYVGKE 95
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
Length = 458
Score = 38.9 bits (89), Expect = 0.002
Identities = 27/80 (33%), Positives = 37/80 (45%), Gaps = 12/80 (15%)
Query: 201 ILLGEPGVGKTAVVEGLAQRIMNKEVPKTLLNKRVIALDLSLLVAGAKYRGEFEERLKKV 260
+L G PG GKT + +A L+N I +K GE E L+K
Sbjct: 242 LLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM---------SKLAGESESNLRKA 289
Query: 261 IEEVKKSANVILFIDEIHTI 280
EE +K+A I+FIDE+ I
Sbjct: 290 FEEAEKNAPAIIFIDELDAI 309
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 38.5 bits (88), Expect = 0.003
Identities = 44/208 (21%), Positives = 102/208 (48%), Gaps = 15/208 (7%)
Query: 385 DKAIDLIDEGAA-QLKMQ-MESEPAKLS-SVKRSIQRLEM-EKQALEMEKKESNAKRMQE 440
D++ L DE + Q K++ E E K S ++K + ++LE+ EK+A + E ++ R +
Sbjct: 34 DRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQ 93
Query: 441 ILKELSDLKEEKIQLEAQFENEKEVFKEISRLKMEMESLKKEAERFKRNGDYQQAGEIEY 500
+++E D +E++ Q E E + S M++ + + + K EI+
Sbjct: 94 LVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKM--------EIQE 145
Query: 501 SKIPENKKKEEELQRKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL 560
++ E K E+ RK+E + + ++++ L +S+ +++ +++ N +
Sbjct: 146 IQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLK 205
Query: 561 NIESELQKRVVGQEK---AIKAIAKAIK 585
++E++ +K ++K IK ++ +K
Sbjct: 206 SLEAQAEKYSQKEDKYEEEIKVLSDKLK 233
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 38.1 bits (87), Expect = 0.004
Identities = 44/208 (21%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 385 DKAIDLIDEGAA-QLKMQM-ESEPAKLS-SVKRSIQRLEM-EKQALEMEKKESNAKRMQE 440
D++ L DE + Q K++ E E K S ++K + ++LE+ EK+A + E ++ R +
Sbjct: 34 DRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQ 93
Query: 441 ILKELSDLKEEKIQLEAQFENEKEVFKEISRLKMEMESLKKEAERFKRNGDYQQAGEIEY 500
+ +E D +E++ Q E E + S M++ + + + K EI+
Sbjct: 94 LFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKM--------EIQE 145
Query: 501 SKIPENKKKEEELQRKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL 560
++ E K E+ RK+E + + ++++ L +S+ +++ +++ N +
Sbjct: 146 IQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLK 205
Query: 561 NIESELQKRVVGQEK---AIKAIAKAIK 585
++E++ +K ++K IK ++ +K
Sbjct: 206 SLEAQAEKYSQKEDKYEEEIKVLSDKLK 233
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
Length = 373
Score = 36.6 bits (83), Expect = 0.012
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 33/144 (22%)
Query: 570 VVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFL------- 622
VVGQE + A+A + + ++LF G GVGKT A+ LA+ L
Sbjct: 18 VVGQEHVLTALANGLSLGRIH--------HAYLFSGTRGVGKTSIARLLAKGLNCETGIT 69
Query: 623 ------FDSDKNLIRIDMSEYLEKHAMSRLIGAAPGYVGYEEGGQLTEAVRRKP----YS 672
D+ + + + + +E A SR E+ L + V+ P +
Sbjct: 70 ATPCGVCDNCREIEQGRFVDLIEIDAASR--------TKVEDTRDLLDNVQYAPARGRFK 121
Query: 673 VVLLDEVEKAHPDVFNLLLQVLDE 696
V L+DEV FN LL+ L+E
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEE 145
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 36.2 bits (82), Expect = 0.016
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 570 VVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSD--K 627
+VGQE +K + +K + LF GP GVGKT +A ALA+ LF +
Sbjct: 27 IVGQEHIVKRLKHYVKTGS---------MPHLLFAGPPGVGKTTAALALARELFGENWRH 77
Query: 628 NLIRIDMSE 636
N + ++ S+
Sbjct: 78 NFLELNASD 86
Score = 32.0 bits (71), Expect = 0.30
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 168 QKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILL--GEPGVGKTAVVEGLAQRIMNK 224
+K +LD ++G++ + R+ + KT + P LL G PGVGKT LA+ + +
Sbjct: 17 EKYRPQRLDDIVGQEHIVKRLKHYV--KTGSMPHLLFAGPPGVGKTTAALALARELFGE 73
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 35.0 bits (79), Expect = 0.035
Identities = 40/151 (26%), Positives = 62/151 (40%), Gaps = 8/151 (5%)
Query: 391 IDEGAAQLKMQMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNAKRMQEI-----LKEL 445
+D +LK ++E E L R E+ A E K + R ++I LKE
Sbjct: 72 LDSQVVELKERLEXELIHLGEEYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKES 131
Query: 446 SD--LKEEKIQLEAQFENEKEVFKEISRLKMEMESLKKEAERFKRNGDYQQAGEIEYSKI 503
S+ +K+ K +LEA+ + +V + K E LKKE Q +
Sbjct: 132 SESNIKDIKKKLEAKRLDRIQVXXRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTA 191
Query: 504 PENKKKEEELQRKWEAMQQ-NGALLQNALTE 533
+K EE+ A+Q+ G L Q A+ E
Sbjct: 192 RYQQKLEEKQAENLRAIQEKEGQLQQEAVAE 222
>pdb|1K6K|A Chain A, Crystal Structure Of Clpa, An Aaa+ Chaperone-Like
Regulator Of Clpap Protease Implication To The
Functional Difference Of Two Atpase Domains
Length = 143
Score = 35.0 bits (79), Expect = 0.035
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 7 MTDQLHETLDSALALALHHKNAEVTPMHMLFAMLNNSQGILIQALQKMPVDIQALRLSVQ 66
+ +L +L+ A A A H++ +T H+L A+L+N +AL+ VD+ ALR ++
Sbjct: 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSA--REALEACSVDLVALRQELE 59
Query: 67 SELNKFAKVSQISKQ 81
+ + + V S++
Sbjct: 60 AFIEQTTPVLPASEE 74
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 34.3 bits (77), Expect = 0.060
Identities = 35/139 (25%), Positives = 60/139 (42%), Gaps = 29/139 (20%)
Query: 166 LTQKALENKLDPVIGRDE---EIIRMMQILIR---------KTKNNPILLGEPGVGKTAV 213
LT+ ++ V G DE E+ +++ L K +++G PG GKT +
Sbjct: 2 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLL 61
Query: 214 VEGLAQRIMNKEVPK-TLLNKRVIALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVIL 272
+ +A +VP T+ + + + G R++ + E+ KK+A I+
Sbjct: 62 AKAIAGEA---KVPFFTISGSDFVEM----------FVGVGASRVRDMFEQAKKAAPCII 108
Query: 273 FIDEIHTI---VGAGASEG 288
FIDEI + GAG G
Sbjct: 109 FIDEIDAVGRQRGAGLGGG 127
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 33.5 bits (75), Expect = 0.10
Identities = 31/104 (29%), Positives = 47/104 (44%), Gaps = 21/104 (20%)
Query: 565 ELQKRVVGQEKAIKAI-AKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLF 623
E ++ VG+ +AI+ + AK I R + SF PTGVGKT A++ FL
Sbjct: 48 EFFRKCVGEPRAIQKMWAKRILRKE-----------SFAATAPTGVGKTSFGLAMSLFLA 96
Query: 624 DSDK--------NLIRIDMSEYLEKHAMSRLIGAAPGYVGYEEG 659
K +L+ I +E + K+A +G +GY G
Sbjct: 97 LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVG-TENLIGYYHG 139
>pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus
Length = 1054
Score = 33.5 bits (75), Expect = 0.10
Identities = 31/104 (29%), Positives = 47/104 (44%), Gaps = 21/104 (20%)
Query: 565 ELQKRVVGQEKAIKAI-AKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLF 623
E ++ VG+ +AI+ + AK I R + SF PTGVGKT A++ FL
Sbjct: 48 EFFRKCVGEPRAIQKMWAKRILRKE-----------SFAATAPTGVGKTSFGLAMSLFLA 96
Query: 624 DSDK--------NLIRIDMSEYLEKHAMSRLIGAAPGYVGYEEG 659
K +L+ I +E + K+A +G +GY G
Sbjct: 97 LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVG-TENLIGYYHG 139
>pdb|1NKS|A Chain A, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|B Chain B, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|C Chain C, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|D Chain D, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|E Chain E, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|F Chain F, Adenylate Kinase From Sulfolobus Acidocaldarius
Length = 194
Score = 32.0 bits (71), Expect = 0.30
Identities = 26/93 (27%), Positives = 43/93 (45%), Gaps = 13/93 (13%)
Query: 201 ILLGEPGVGKTAVVEGLAQRIMNKEVPKTLLNKRVIALDLSLLVAGAKYRGEFE----ER 256
I+ G PGVGK+ V+ + + + N+ + ++N L +L + AK R E E+
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEK 64
Query: 257 LKK--------VIEEVKKSANVILFIDEIHTIV 281
KK + EE + LFID H ++
Sbjct: 65 QKKLQIDAAKGIAEEARAGGEGYLFID-THAVI 96
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 30.4 bits (67), Expect = 0.87
Identities = 28/111 (25%), Positives = 50/111 (44%), Gaps = 17/111 (15%)
Query: 420 EMEKQALEMEKKESNAKRMQEILKELSDLKEEKIQLEAQFENEKEVFKEIS--------- 470
E + +M K + N +R+ ++LKEL D E LE + + + KEI
Sbjct: 24 EFLNEVEKMLKNQVNTRRIHQLLKELDDPLLENKDLEEKLQAFLDYVKEIPNLPEARKRY 83
Query: 471 RLKMEMESLKKEAERFK------RNGDYQQAGEIEYSK--IPENKKKEEEL 513
R++ +E ++K F + + +I+Y+K P KKK ++L
Sbjct: 84 RIQKSLEMIEKLRSWFLIDYLECSGEEVDLSTDIQYAKGVGPNRKKKLKKL 134
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 30.4 bits (67), Expect = 0.87
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 201 ILLGEPGVGKTAVVEGLAQRIMNKEVPKTLLNKRVIALDLSLLVAGAKYRGEFEERLKKV 260
+L+G PGVGKT + +A RV + S + G R++ +
Sbjct: 77 LLVGPPGVGKTHLARAVAGEA------------RVPFITASGSDFVEMFVGVGAARVRDL 124
Query: 261 IEEVKKSANVILFIDEIHTI---VGAGASEGGMDAANILKPAL 300
E K+ A I+FIDEI + G+G G + L L
Sbjct: 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL 167
Score = 29.6 bits (65), Expect = 1.5
Identities = 30/116 (25%), Positives = 53/116 (44%), Gaps = 16/116 (13%)
Query: 568 KRVVGQEKAIKAIAKAIK--RNKAGLSDSNKPIGS-FLFLGPTGVGKTESAKALAQFLFD 624
K V G E+A + + + ++ +N + + I L +GP GVGKT A+A+A +
Sbjct: 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG---E 96
Query: 625 SDKNLIRIDMSEYLEKHAMSRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVE 680
+ I S+++E +G VG L E +R +V +DE++
Sbjct: 97 ARVPFITASGSDFVE-----MFVG-----VGAARVRDLFETAKRHAPCIVFIDEID 142
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 30.4 bits (67), Expect = 0.87
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 201 ILLGEPGVGKTAVVEGLAQRIMNKEVPKTLLNKRVIALDLSLLVAGAKYRGEFEERLKKV 260
+L+G PGVGKT + +A RV + S + G R++ +
Sbjct: 53 LLVGPPGVGKTHLARAVAGEA------------RVPFITASGSDFVEMFVGVGAARVRDL 100
Query: 261 IEEVKKSANVILFIDEIHTI---VGAGASEGGMDAANILKPAL 300
E K+ A I+FIDEI + G+G G + L L
Sbjct: 101 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL 143
Score = 29.6 bits (65), Expect = 1.5
Identities = 30/116 (25%), Positives = 53/116 (44%), Gaps = 16/116 (13%)
Query: 568 KRVVGQEKAIKAIAKAIK--RNKAGLSDSNKPIGS-FLFLGPTGVGKTESAKALAQFLFD 624
K V G E+A + + + ++ +N + + I L +GP GVGKT A+A+A +
Sbjct: 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG---E 72
Query: 625 SDKNLIRIDMSEYLEKHAMSRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVE 680
+ I S+++E +G VG L E +R +V +DE++
Sbjct: 73 ARVPFITASGSDFVE-----MFVG-----VGAARVRDLFETAKRHAPCIVFIDEID 118
>pdb|1K9X|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|B Chain B, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|C Chain C, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|D Chain D, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1KA2|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Mg
pdb|1KA4|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Nat-Pb
Length = 499
Score = 29.6 bits (65), Expect = 1.5
Identities = 55/226 (24%), Positives = 92/226 (40%), Gaps = 44/226 (19%)
Query: 255 ERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTL- 313
E +K+++ + ++ I I +++G E M IL+ ++A+GEL + L
Sbjct: 8 ETIKQILAKYRR----IWAIGHAQSVLGWDL-EVNMPKEGILERSVAQGELSVLSHELLL 62
Query: 314 -KEYRKYFEKDMALQRRFQPILLNEPS------INEALQILRG-----LKETLETHHNIT 361
E+ EK L+ LNE ++ +++I R ++E ET
Sbjct: 63 HPEFVNLVEKAKGLEN------LNEYERGIVRVLDRSIRIARAFPPEFIREVSET----- 111
Query: 362 INDSALIASAKLSSRYITDRFLP--DKAIDLIDEGAAQLKMQMESEPAKLSSVKRSIQRL 419
A A + ++ +F P DK I L A L + E A L + ++
Sbjct: 112 -TSLATKAWEEAKAKDDFSKFEPWLDKIISLAKRAAEYLGYEEEPYDALLDLYEEGLRTR 170
Query: 420 EMEKQALEMEKKESNAKRMQEILKELSD--LKEEKIQLEAQFENEK 463
++EK +EKK LK L D L+E K+ E E EK
Sbjct: 171 DVEKMFEVLEKK----------LKPLLDKILEEGKVPREHPLEKEK 206
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
Length = 330
Score = 29.6 bits (65), Expect = 1.5
Identities = 30/124 (24%), Positives = 51/124 (40%), Gaps = 25/124 (20%)
Query: 573 QEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRI 632
+E+AI AI I K + + G TG GKT K++ +F+ ++ +
Sbjct: 157 KEQAISAIKDGIAIGK-----------NVIVCGGTGSGKTTYIKSIXEFIPKEERIISIE 205
Query: 633 DMSEYLEKHAMSRLIGAAPGYVGYEEGGQLTEA------VRRKPYSVVLLDEVEKAHPDV 686
D E + KH + Y GG +T A +R +P ++L + D
Sbjct: 206 DTEEIVFKHHKN--------YTQLFFGGNITSADCLKSCLRXRPDRIILGELRSSEAYDF 257
Query: 687 FNLL 690
+N+L
Sbjct: 258 YNVL 261
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 29.3 bits (64), Expect = 1.9
Identities = 35/162 (21%), Positives = 62/162 (37%), Gaps = 33/162 (20%)
Query: 571 VGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLI 630
+GQE K ++ A++ K + + L GP G+GKT A +A L +
Sbjct: 28 IGQENVKKKLSLALEAAKM----RGEVLDHVLLAGPPGLGKTTLAHIIASELQTN----- 78
Query: 631 RIDMSEYLEKHAMSRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLL 690
I G V ++G + V+ +DE+ + + V LL
Sbjct: 79 ----------------IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELL 122
Query: 691 LQVLDE-------GHLTDSKGVRVDFKNTILILTSNVASGAL 725
+++ G +K +R+D + L+ + V SG L
Sbjct: 123 YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV-GATVRSGLL 163
Score = 28.1 bits (61), Expect = 4.3
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 175 LDPVIGRDEEIIRMMQILIRKTK------NNPILLGEPGVGKTAVVEGLAQRIM-NKEVP 227
LD IG+ E + + + + + K ++ +L G PG+GKT + +A + N V
Sbjct: 24 LDEFIGQ-ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT 82
Query: 228 K--TLLNKRVIALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGA 285
L+ + +A L+ L G + RL K +EE+ SA ID ++G G
Sbjct: 83 SGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID---IMIGKGP 139
Query: 286 S 286
S
Sbjct: 140 S 140
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 28.9 bits (63), Expect = 2.5
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 379 TDRFL--PDKAIDLIDEGAAQLKMQMESEPAKLSSVKRSIQRLEMEKQALEMEKKES 433
T+RF+ P++ +D+IDEG A + + + + SS SI + ++++ +E EKK S
Sbjct: 169 TERFVSSPEEVMDVIDEGKANRHVAV-TNMNEHSSRSHSIFLINIKQENVETEKKLS 224
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 28.9 bits (63), Expect = 2.5
Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 33/162 (20%)
Query: 571 VGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLI 630
+GQE K ++ A++ K + + L GP G+GKT A +A L +
Sbjct: 28 IGQENVKKKLSLALEAAKM----RGEVLDHVLLAGPPGLGKTTLAHIIASELQTN----- 78
Query: 631 RIDMSEYLEKHAMSRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLL 690
I G V ++G + V+ +DE+ + + V LL
Sbjct: 79 ----------------IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELL 122
Query: 691 LQVLDE-------GHLTDSKGVRVDFKNTILILTSNVASGAL 725
+++ G +K +R+D + L+ S SG L
Sbjct: 123 YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV-GSTTRSGLL 163
Score = 28.1 bits (61), Expect = 4.3
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 175 LDPVIGRDEEIIRMMQILIRKTK------NNPILLGEPGVGKTAVVEGLAQRIM-NKEVP 227
LD IG+ E + + + + + K ++ +L G PG+GKT + +A + N V
Sbjct: 24 LDEFIGQ-ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT 82
Query: 228 K--TLLNKRVIALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGA 285
L+ + +A L+ L G + RL K +EE+ SA ID ++G G
Sbjct: 83 SGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID---IMIGKGP 139
Query: 286 S 286
S
Sbjct: 140 S 140
>pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus
Length = 185
Score = 28.9 bits (63), Expect = 2.5
Identities = 31/134 (23%), Positives = 63/134 (46%), Gaps = 14/134 (10%)
Query: 513 LQRKWEAMQQNGALLQNALTENNIA---EIVSQWTHIPVQKM--LQSEKNRVLNIESELQ 567
+Q+ E ++ N A L+ + ++ H+P+ ++ + + R L ++S
Sbjct: 14 MQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQS--- 70
Query: 568 KRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGP-TGVGKTESAKALAQFLFDSD 626
+ A+KAI KAI+ + GL+ SNK ++ + P T + + +A+ Q+ +
Sbjct: 71 ----WDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYA-EEG 125
Query: 627 KNLIRIDMSEYLEK 640
+ IR E L+K
Sbjct: 126 RVAIRNIRREALDK 139
>pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C215s) Mutant
Length = 310
Score = 28.5 bits (62), Expect = 3.3
Identities = 32/153 (20%), Positives = 64/153 (40%), Gaps = 6/153 (3%)
Query: 416 IQRLEMEKQALEMEKKESNAKRMQEILKELSDL--KEEKIQLEAQFENEKEVFK-EISRL 472
++ +EMEK+ +++K S A Q+I E SD + K+ ++V + SR+
Sbjct: 10 LEFMEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRI 69
Query: 473 KMEMESLKKEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALT 532
K+ E + + Q++ + +P E+ WE + G ++ N +
Sbjct: 70 KLHQEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEM--VWE-QKSRGVVMLNRVM 126
Query: 533 ENNIAEIVSQWTHIPVQKMLQSEKNRVLNIESE 565
E + W ++M+ + N L + SE
Sbjct: 127 EKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE 159
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 28.5 bits (62), Expect = 3.3
Identities = 17/71 (23%), Positives = 35/71 (48%)
Query: 412 VKRSIQRLEMEKQALEMEKKESNAKRMQEILKELSDLKEEKIQLEAQFENEKEVFKEISR 471
+ + I L M L M +++ + +Q++ + + K +K A ENEK+ + +
Sbjct: 276 INKRILALCMGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQMERAMLENEKKKREMAEK 335
Query: 472 LKMEMESLKKE 482
K ++E K+E
Sbjct: 336 EKEKIEREKEE 346
Score = 27.7 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 395 AAQLKMQMESEPAKLSSVKRSIQRLEMEKQALEMEKKE 432
A + K Q + E A L + K+ + E EK+ +E EK+E
Sbjct: 309 AREEKHQKQMERAMLENEKKKREMAEKEKEKIEREKEE 346
>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
Length = 295
Score = 28.5 bits (62), Expect = 3.3
Identities = 32/153 (20%), Positives = 64/153 (40%), Gaps = 6/153 (3%)
Query: 416 IQRLEMEKQALEMEKKESNAKRMQEILKELSDL--KEEKIQLEAQFENEKEVFK-EISRL 472
++ +EMEK+ +++K S A Q+I E SD + K+ ++V + SR+
Sbjct: 10 LEFMEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRI 69
Query: 473 KMEMESLKKEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALT 532
K+ E + + Q++ + +P E+ WE + G ++ N +
Sbjct: 70 KLHQEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEM--VWE-QKSRGVVMLNRVM 126
Query: 533 ENNIAEIVSQWTHIPVQKMLQSEKNRVLNIESE 565
E + W ++M+ + N L + SE
Sbjct: 127 EKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISE 159
>pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b
Length = 298
Score = 28.1 bits (61), Expect = 4.3
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
Query: 419 LEMEKQALEMEKKESNAKRMQEILKELSDL--KEEKIQLEAQFENEKEVFK-EISRLKME 475
+EMEK+ +++K S A Q+I E SD + K+ ++V + SR+K+
Sbjct: 1 MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH 60
Query: 476 MESLKKEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENN 535
E + + Q++ + +P E+ WE + G ++ N + E
Sbjct: 61 QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEM--VWE-QKSRGVVMLNRVMEKG 117
Query: 536 IAEIVSQWTHIPVQKMLQSEKNRVLNIESE 565
+ W ++M+ + N L + SE
Sbjct: 118 SLKCAQYWPQKEEKEMIFEDTNLKLTLISE 147
>pdb|1LKV|X Chain X, Crystal Structure Of The Middle And C-Terminal Domains Of
The Flagellar Rotor Protein Flig
Length = 232
Score = 28.1 bits (61), Expect = 4.3
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 31/168 (18%)
Query: 562 IESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQF 621
+++E+ KR+ E+ + K I+RN K I F+ + VG ++A A+
Sbjct: 51 LQTEVLKRIALLERTSPEVVKEIERN------LEKKISGFVSRTFSKVGGIDTA---AEI 101
Query: 622 LFDSDKNLIRIDMSEYLEKHAMSRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEK 681
+ + D+ EK M +L+ +E +L + +RR+ + + +++ K
Sbjct: 102 MNNLDRT---------TEKKIMDKLV---------QENPELADEIRRRMF---VFEDILK 140
Query: 682 AHPDVFNLLLQVLDEGHLTDS-KGVRVDFKNTILILTSNVASGALLEE 728
L+L+ +D L + KG + K I S A+ L +E
Sbjct: 141 LDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDE 188
>pdb|1PTV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine
Length = 321
Score = 28.1 bits (61), Expect = 4.3
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
Query: 419 LEMEKQALEMEKKESNAKRMQEILKELSDL--KEEKIQLEAQFENEKEVFK-EISRLKME 475
+EMEK+ +++K S A Q+I E SD + K+ ++V + SR+K+
Sbjct: 1 MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH 60
Query: 476 MESLKKEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENN 535
E + + Q++ + +P E+ WE + G ++ N + E
Sbjct: 61 QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEM--VWE-QKSRGVVMLNRVMEKG 117
Query: 536 IAEIVSQWTHIPVQKMLQSEKNRVLNIESE 565
+ W ++M+ + N L + SE
Sbjct: 118 SLKCAQYWPQKEEKEMIFEDTNLKLTLISE 147
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 28.1 bits (61), Expect = 4.3
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 175 LDPVIGRDEEIIRMMQILIRKTK------NNPILLGEPGVGKTAVVEGLAQRIM-NKEVP 227
LD IG+ E + + + + + K ++ +L G PG+GKT + +A + N V
Sbjct: 24 LDEFIGQ-ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT 82
Query: 228 K--TLLNKRVIALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGA 285
L+ + +A L+ L G + RL K +EE+ SA ID ++G G
Sbjct: 83 SGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID---IMIGKGP 139
Query: 286 S 286
S
Sbjct: 140 S 140
Score = 28.1 bits (61), Expect = 4.3
Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 32/152 (21%)
Query: 571 VGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLI 630
+GQE K ++ A++ K + + L GP G+GKT A +A L +
Sbjct: 28 IGQENVKKKLSLALEAAKM----RGEVLDHVLLAGPPGLGKTTLAHIIASELQTN----- 78
Query: 631 RIDMSEYLEKHAMSRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLL 690
I G V ++G + V+ +DE+ + + V LL
Sbjct: 79 ----------------IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELL 122
Query: 691 LQVLDE-------GHLTDSKGVRVDFKNTILI 715
+++ G +K +R+D + L+
Sbjct: 123 YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154
>pdb|1EEN|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-D-A-D-Bpa-Ptyr-L-I-P-Q-Q-G
pdb|1PTY| Crystal Structure Of Protein Tyrosine Phosphatase 1b Complexed
With Two Phosphotyrosine Molecules
pdb|1EEO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-E-L-E-F-Ptyr-M-D-Y-E-Nh2
Length = 321
Score = 28.1 bits (61), Expect = 4.3
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
Query: 419 LEMEKQALEMEKKESNAKRMQEILKELSDL--KEEKIQLEAQFENEKEVFK-EISRLKME 475
+EMEK+ +++K S A Q+I E SD + K+ ++V + SR+K+
Sbjct: 1 MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH 60
Query: 476 MESLKKEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENN 535
E + + Q++ + +P E+ WE + G ++ N + E
Sbjct: 61 QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEM--VWE-QKSRGVVMLNRVMEKG 117
Query: 536 IAEIVSQWTHIPVQKMLQSEKNRVLNIESE 565
+ W ++M+ + N L + SE
Sbjct: 118 SLKCAQYWPQKEEKEMIFEDTNLKLTLISE 147
>pdb|1A5Y| Protein Tyrosine Phosphatase 1b Cysteinyl-Phosphate Intermediate
Length = 330
Score = 28.1 bits (61), Expect = 4.3
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
Query: 419 LEMEKQALEMEKKESNAKRMQEILKELSDL--KEEKIQLEAQFENEKEVFK-EISRLKME 475
+EMEK+ +++K S A Q+I E SD + K+ ++V + SR+K+
Sbjct: 1 MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH 60
Query: 476 MESLKKEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENN 535
E + + Q++ + +P E+ WE + G ++ N + E
Sbjct: 61 QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEM--VWE-QKSRGVVMLNRVMEKG 117
Query: 536 IAEIVSQWTHIPVQKMLQSEKNRVLNIESE 565
+ W ++M+ + N L + SE
Sbjct: 118 SLKCAQYWPQKEEKEMIFEDTNLKLTLISE 147
>pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 6-(Oxalyl-Amino)-1h-Indole-5-Carboxylic
Acid
pdb|1C88|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With
2-(Oxalyl-Amino)-4,5,6,7-Tetrahydro-Thieno[2
3-C]pyridine-3-Carboxylic Acid
pdb|1ECV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 5-Iodo-2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C87|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-Thieno[2,3-
C]pyran-3-Carboxylic Acid
pdb|1C84|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 3-(Oxalyl-Amino)-Naphthalene-2-Carboxlic
Aci
pdb|1C85|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-Benzoic Acid
Length = 298
Score = 28.1 bits (61), Expect = 4.3
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
Query: 419 LEMEKQALEMEKKESNAKRMQEILKELSDL--KEEKIQLEAQFENEKEVFK-EISRLKME 475
+EMEK+ +++K S A Q+I E SD + K+ ++V + SR+K+
Sbjct: 1 MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH 60
Query: 476 MESLKKEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENN 535
E + + Q++ + +P E+ WE + G ++ N + E
Sbjct: 61 QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEM--VWE-QKSRGVVMLNRVMEKG 117
Query: 536 IAEIVSQWTHIPVQKMLQSEKNRVLNIESE 565
+ W ++M+ + N L + SE
Sbjct: 118 SLKCAQYWPQKEEKEMIFEDTNLKLTLISE 147
>pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Substrate Specificity
Of Protein-Tyrosine Phosphatase 1b And Alpha
Length = 298
Score = 28.1 bits (61), Expect = 4.3
Identities = 32/150 (21%), Positives = 60/150 (39%), Gaps = 6/150 (4%)
Query: 419 LEMEKQALEMEKKESNAKRMQEILKELSDLKEEKIQLEAQFENEKEVFK---EISRLKME 475
+EMEK+ +++K S A Q+I E SD +L + V + SR+K+
Sbjct: 1 MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYVNVSPFDHSRIKLH 60
Query: 476 MESLKKEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENN 535
E + + Q++ + +P E+ WE + G ++ N + E
Sbjct: 61 QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEM--VWE-QKSRGVVMLNRVMEKG 117
Query: 536 IAEIVSQWTHIPVQKMLQSEKNRVLNIESE 565
+ W ++M+ + N L + SE
Sbjct: 118 SLKCAQYWPQKEEKEMIFEDTNLKLTLISE 147
>pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1KAV|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1G7G|A Chain A, Human Ptp1b Catalytic Domain Complexes With Pnu179326
pdb|1G7F|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177496
pdb|1JF7|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1JF7|B Chain B, Human Ptp1b Catalytic Domain Complexed With Pnu177836
Length = 298
Score = 28.1 bits (61), Expect = 4.3
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
Query: 419 LEMEKQALEMEKKESNAKRMQEILKELSDL--KEEKIQLEAQFENEKEVFK-EISRLKME 475
+EMEK+ +++K S A Q+I E SD + K+ ++V + SR+K+
Sbjct: 1 MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH 60
Query: 476 MESLKKEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENN 535
E + + Q++ + +P E+ WE + G ++ N + E
Sbjct: 61 QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEM--VWE-QKSRGVVMLNRVMEKG 117
Query: 536 IAEIVSQWTHIPVQKMLQSEKNRVLNIESE 565
+ W ++M+ + N L + SE
Sbjct: 118 SLKCAQYWPQKEEKEMIFEDTNLKLTLISE 147
>pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed With Tpi
Length = 321
Score = 28.1 bits (61), Expect = 4.3
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
Query: 419 LEMEKQALEMEKKESNAKRMQEILKELSDL--KEEKIQLEAQFENEKEVFK-EISRLKME 475
+EMEK+ +++K S A Q+I E SD + K+ ++V + SR+K+
Sbjct: 1 MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH 60
Query: 476 MESLKKEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENN 535
E + + Q++ + +P E+ WE + G ++ N + E
Sbjct: 61 QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEM--VWE-QKSRGVVMLNRVMEKG 117
Query: 536 IAEIVSQWTHIPVQKMLQSEKNRVLNIESE 565
+ W ++M+ + N L + SE
Sbjct: 118 SLKCAQYWPQKEEKEMIFEDTNLKLTLISE 147
>pdb|1AAX| Crystal Structure Of Protein Tyrosine Phosphatase 1b Complexed
With Two Bis(Para-Phosphophenyl)methane (Bppm) Molecules
Length = 321
Score = 28.1 bits (61), Expect = 4.3
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
Query: 419 LEMEKQALEMEKKESNAKRMQEILKELSDL--KEEKIQLEAQFENEKEVFK-EISRLKME 475
+EMEK+ +++K S A Q+I E SD + K+ ++V + SR+K+
Sbjct: 1 MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH 60
Query: 476 MESLKKEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENN 535
E + + Q++ + +P E+ WE + G ++ N + E
Sbjct: 61 QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEM--VWE-QKSRGVVMLNRVMEKG 117
Query: 536 IAEIVSQWTHIPVQKMLQSEKNRVLNIESE 565
+ W ++M+ + N L + SE
Sbjct: 118 SLKCAQYWPQKEEKEMIFEDTNLKLTLISE 147
>pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
(R47v, D48n) Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-
Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 298
Score = 28.1 bits (61), Expect = 4.3
Identities = 32/150 (21%), Positives = 60/150 (39%), Gaps = 6/150 (4%)
Query: 419 LEMEKQALEMEKKESNAKRMQEILKELSDLKEEKIQLEAQFENEKEVFK---EISRLKME 475
+EMEK+ +++K S A Q+I E SD +L + V + SR+K+
Sbjct: 1 MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYVNVSPFDHSRIKLH 60
Query: 476 MESLKKEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENN 535
E + + Q++ + +P E+ WE + G ++ N + E
Sbjct: 61 QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEM--VWE-QKSRGVVMLNRVMEKG 117
Query: 536 IAEIVSQWTHIPVQKMLQSEKNRVLNIESE 565
+ W ++M+ + N L + SE
Sbjct: 118 SLKCAQYWPQKEEKEMIFEDTNLKLTLISE 147
>pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed With 7-(1,1-Dioxo-1h-
Benzo[d]isothiazol-3-Yloxymethyl)-2-(Oxalyl-Amino)-4,7-
Dihydro-5h-Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 321
Score = 28.1 bits (61), Expect = 4.3
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
Query: 419 LEMEKQALEMEKKESNAKRMQEILKELSDL--KEEKIQLEAQFENEKEVFK-EISRLKME 475
+EMEK+ +++K S A Q+I E SD + K+ ++V + SR+K+
Sbjct: 1 MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH 60
Query: 476 MESLKKEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENN 535
E + + Q++ + +P E+ WE + G ++ N + E
Sbjct: 61 QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEM--VWE-QKSRGVVMLNRVMEKG 117
Query: 536 IAEIVSQWTHIPVQKMLQSEKNRVLNIESE 565
+ W ++M+ + N L + SE
Sbjct: 118 SLKCAQYWPQKEEKEMIFEDTNLKLTLISE 147
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 28.1 bits (61), Expect = 4.3
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 175 LDPVIGRDEEIIRMMQILIRKTK------NNPILLGEPGVGKTAVVEGLAQRIM-NKEVP 227
LD IG+ E + + + + + K ++ +L G PG+GKT + +A + N V
Sbjct: 24 LDEFIGQ-ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT 82
Query: 228 K--TLLNKRVIALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGA 285
L+ + +A L+ L G + RL K +EE+ SA ID ++G G
Sbjct: 83 SGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID---IMIGKGP 139
Query: 286 S 286
S
Sbjct: 140 S 140
Score = 28.1 bits (61), Expect = 4.3
Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 32/152 (21%)
Query: 571 VGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLI 630
+GQE K ++ A++ K + + L GP G+GKT A +A L +
Sbjct: 28 IGQENVKKKLSLALEAAKM----RGEVLDHVLLAGPPGLGKTTLAHIIASELQTN----- 78
Query: 631 RIDMSEYLEKHAMSRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLL 690
I G V ++G + V+ +DE+ + + V LL
Sbjct: 79 ----------------IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELL 122
Query: 691 LQVLDE-------GHLTDSKGVRVDFKNTILI 715
+++ G +K +R+D + L+
Sbjct: 123 YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 28.1 bits (61), Expect = 4.3
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 175 LDPVIGRDEEIIRMMQILIRKTK------NNPILLGEPGVGKTAVVEGLAQRIM-NKEVP 227
LD IG+ E + + + + + K ++ +L G PG+GKT + +A + N V
Sbjct: 24 LDEFIGQ-ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT 82
Query: 228 K--TLLNKRVIALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGA 285
L+ + +A L+ L G + RL K +EE+ SA ID ++G G
Sbjct: 83 SGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID---IMIGKGP 139
Query: 286 S 286
S
Sbjct: 140 S 140
Score = 28.1 bits (61), Expect = 4.3
Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 32/152 (21%)
Query: 571 VGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLI 630
+GQE K ++ A++ K + + L GP G+GKT A +A L +
Sbjct: 28 IGQENVKKKLSLALEAAKM----RGEVLDHVLLAGPPGLGKTTLAHIIASELQTN----- 78
Query: 631 RIDMSEYLEKHAMSRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLL 690
I G V ++G + V+ +DE+ + + V LL
Sbjct: 79 ----------------IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELL 122
Query: 691 LQVLDE-------GHLTDSKGVRVDFKNTILI 715
+++ G +K +R+D + L+
Sbjct: 123 YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154
>pdb|2HNQ| Protein-Tyrosine Phosphatase 1b (Human) (E.C.3.1.3.48) Complexed
With Sodium Tungstate
pdb|2HNP| Protein-Tyrosine Phosphatase 1b (Human) (E.C.3.1.3.48)
Length = 321
Score = 28.1 bits (61), Expect = 4.3
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
Query: 419 LEMEKQALEMEKKESNAKRMQEILKELSDL--KEEKIQLEAQFENEKEVFK-EISRLKME 475
+EMEK+ +++K S A Q+I E SD + K+ ++V + SR+K+
Sbjct: 1 MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH 60
Query: 476 MESLKKEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENN 535
E + + Q++ + +P E+ WE + G ++ N + E
Sbjct: 61 QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEM--VWE-QKSRGVVMLNRVMEKG 117
Query: 536 IAEIVSQWTHIPVQKMLQSEKNRVLNIESE 565
+ W ++M+ + N L + SE
Sbjct: 118 SLKCAQYWPQKEEKEMIFEDTNLKLTLISE 147
>pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Bis-Phosphorylated Peptide
(Etd(Ptr)(Ptr) Rkggkgll) From The Insulin Receptor
Kinase
pdb|1G1G|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Mono-Phosphorylated Peptide (Etdy(Ptr)
Rkggkgll) From The Insulin Receptor Kinase
pdb|1G1F|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Tri-Phosphorylated Peptide (Rdi(Ptr)
Etd(Ptr)(Ptr)rk) From The Insulin Receptor Kinase
Length = 298
Score = 28.1 bits (61), Expect = 4.3
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
Query: 419 LEMEKQALEMEKKESNAKRMQEILKELSDL--KEEKIQLEAQFENEKEVFK-EISRLKME 475
+EMEK+ +++K S A Q+I E SD + K+ ++V + SR+K+
Sbjct: 1 MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH 60
Query: 476 MESLKKEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENN 535
E + + Q++ + +P E+ WE + G ++ N + E
Sbjct: 61 QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEM--VWE-QKSRGVVMLNRVMEKG 117
Query: 536 IAEIVSQWTHIPVQKMLQSEKNRVLNIESE 565
+ W ++M+ + N L + SE
Sbjct: 118 SLKCAQYWPQKEEKEMIFEDTNLKLTLISE 147
>pdb|1PTU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Hexa-Peptide
(Dadepyl-Nh2)
pdb|1PTT|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Tetra-Peptide
(Ac-Depyl-Nh2)
Length = 321
Score = 28.1 bits (61), Expect = 4.3
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
Query: 419 LEMEKQALEMEKKESNAKRMQEILKELSDL--KEEKIQLEAQFENEKEVFK-EISRLKME 475
+EMEK+ +++K S A Q+I E SD + K+ ++V + SR+K+
Sbjct: 1 MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH 60
Query: 476 MESLKKEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEAMQQNGALLQNALTENN 535
E + + Q++ + +P E+ WE + G ++ N + E
Sbjct: 61 QEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEM--VWE-QKSRGVVMLNRVMEKG 117
Query: 536 IAEIVSQWTHIPVQKMLQSEKNRVLNIESE 565
+ W ++M+ + N L + SE
Sbjct: 118 SLKCAQYWPQKEEKEMIFEDTNLKLTLISE 147
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 27.7 bits (60), Expect = 5.6
Identities = 16/52 (30%), Positives = 26/52 (49%), Gaps = 4/52 (7%)
Query: 571 VGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFL 622
+GQE+ + + ++ KA +P+ L GP G+GKT A +A L
Sbjct: 15 IGQERLKQKLRVYLEAAKA----RKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
Score = 26.9 bits (58), Expect = 9.6
Identities = 29/113 (25%), Positives = 51/113 (44%), Gaps = 28/113 (24%)
Query: 175 LDPVIGRDEEIIRMMQILIR--KTKNNPI----LLGEPGVGKTAVVEGLAQRI-MNKEVP 227
LD IG+ E + + +++ + K + P+ L G PG+GKT + +A + +N V
Sbjct: 11 LDEYIGQ-ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
Query: 228 KTLLNKRVIALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTI 280
++ DL+ ++A + G+ ILFIDEIH +
Sbjct: 70 SGPAIEK--PGDLAAILANSLEEGD------------------ILFIDEIHRL 102
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 27.7 bits (60), Expect = 5.6
Identities = 16/52 (30%), Positives = 26/52 (49%), Gaps = 4/52 (7%)
Query: 571 VGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFL 622
+GQE+ + + ++ KA +P+ L GP G+GKT A +A L
Sbjct: 15 IGQERLKQKLRVYLEAAKA----RKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
Score = 26.9 bits (58), Expect = 9.6
Identities = 29/113 (25%), Positives = 51/113 (44%), Gaps = 28/113 (24%)
Query: 175 LDPVIGRDEEIIRMMQILIR--KTKNNPI----LLGEPGVGKTAVVEGLAQRI-MNKEVP 227
LD IG+ E + + +++ + K + P+ L G PG+GKT + +A + +N V
Sbjct: 11 LDEYIGQ-ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
Query: 228 KTLLNKRVIALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTI 280
++ DL+ ++A + G+ ILFIDEIH +
Sbjct: 70 SGPAIEK--PGDLAAILANSLEEGD------------------ILFIDEIHRL 102
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 27.7 bits (60), Expect = 5.6
Identities = 16/52 (30%), Positives = 26/52 (49%), Gaps = 4/52 (7%)
Query: 571 VGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFL 622
+GQE+ + + ++ KA +P+ L GP G+GKT A +A L
Sbjct: 15 IGQERLKQKLRVYLEAAKA----RKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
Score = 26.9 bits (58), Expect = 9.6
Identities = 29/113 (25%), Positives = 51/113 (44%), Gaps = 28/113 (24%)
Query: 175 LDPVIGRDEEIIRMMQILIR--KTKNNPI----LLGEPGVGKTAVVEGLAQRI-MNKEVP 227
LD IG+ E + + +++ + K + P+ L G PG+GKT + +A + +N V
Sbjct: 11 LDEYIGQ-ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
Query: 228 KTLLNKRVIALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTI 280
++ DL+ ++A + G+ ILFIDEIH +
Sbjct: 70 SGPAIEK--PGDLAAILANSLEEGD------------------ILFIDEIHRL 102
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 27.3 bits (59), Expect = 7.3
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 18/103 (17%)
Query: 398 LKMQMESEPAKLSSVKRSIQRL-----EMEKQALEMEKKESNAKRMQEILKELSDLKEEK 452
L+ ++S+ + ++ ++ Q L E+E + ++ E +++AK + E+ ++ + E+K
Sbjct: 461 LQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQK 520
Query: 453 --------IQLEAQFENEK-EVFKEISR---LKM-EMESLKKE 482
QL + EN++ ++ KE R LK+ E E L KE
Sbjct: 521 ERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE 563
>pdb|1HNF| Cd2 (Human)
Length = 182
Score = 27.3 bits (59), Expect = 7.3
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 9/76 (11%)
Query: 444 ELSDLKEEKIQLE---AQFENEKEVFKEISRLK------MEMESLKKEAERFKRNGDYQQ 494
++ D+K EK + AQF EKE FKE K ++++ LK + + + Y
Sbjct: 29 DIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDT 88
Query: 495 AGEIEYSKIPENKKKE 510
G+ KI + K +E
Sbjct: 89 KGKNVLEKIFDLKIQE 104
>pdb|1GYA| N-Glycan And Polypeptide Nmr Solution Structures Of The Adhesion
Domain Of Human Cd2
Length = 105
Score = 27.3 bits (59), Expect = 7.3
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 9/76 (11%)
Query: 444 ELSDLKEEKIQLE---AQFENEKEVFKEISRLK------MEMESLKKEAERFKRNGDYQQ 494
++ D+K EK + AQF EKE FKE K ++++ LK + + + Y
Sbjct: 29 DIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDT 88
Query: 495 AGEIEYSKIPENKKKE 510
G+ KI + K +E
Sbjct: 89 KGKNVLEKIFDLKIQE 104
>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|B Chain B, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|C Chain C, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|D Chain D, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
Length = 553
Score = 26.9 bits (58), Expect = 9.6
Identities = 41/172 (23%), Positives = 66/172 (37%), Gaps = 31/172 (18%)
Query: 505 ENKKKEEELQR-------KWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKN 557
E +KK EL R W + + NA+ + IV + Q + +K
Sbjct: 15 ELRKKALELSRLMRHRGPDWSGIYAS----DNAILAHERLSIVD--VNAGAQPLYNQQKT 68
Query: 558 RVLNIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKA 617
VL + E+ +A++A + + G SD + + GP + + A
Sbjct: 69 HVLAVNGEIYNH-----QALRAEYGDRYQFQTG-SDCEVILALYQEKGPEFLDDLQGMFA 122
Query: 618 LAQFLFDSDKNLIRIDMSEYLEKHAMSRLIGAAPGYVGYEEGGQLTEAVRRK 669
A L+DS+K+ I +G P Y+GY+E GQL A K
Sbjct: 123 FA--LYDSEKDAYLIGRDH----------LGIIPLYMGYDEHGQLYVASEMK 162
>pdb|1M1J|B Chain B, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|E Chain E, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1EI3|B Chain B, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|E Chain E, Crystal Structure Of Native Chicken Fibrinogen
Length = 464
Score = 26.9 bits (58), Expect = 9.6
Identities = 17/77 (22%), Positives = 37/77 (47%), Gaps = 8/77 (10%)
Query: 565 ELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFD 624
ELQ ++ QEK +K + + +K A SD++ + ++ + + KT+ +
Sbjct: 86 ELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQR-------- 137
Query: 625 SDKNLIRIDMSEYLEKH 641
D ++I + + +E H
Sbjct: 138 KDNDIILSEYNTEMELH 154
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 26.9 bits (58), Expect = 9.6
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 175 LDPVIGRDEEIIRMMQILIRKTK------NNPILLGEPGVGKTAVVEGLAQRIM-NKEVP 227
LD IG+ E + + + + + K ++ +L G PG+G+T + +A + N V
Sbjct: 24 LDEFIGQ-ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASELQTNIHVT 82
Query: 228 K--TLLNKRVIALDLSLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGA 285
L+ + +A L+ L G + RL K +EE+ SA ID ++G G
Sbjct: 83 SGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID---IMIGKGP 139
Query: 286 S 286
S
Sbjct: 140 S 140
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.133 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,229,828
Number of Sequences: 13198
Number of extensions: 167622
Number of successful extensions: 540
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 86
length of query: 856
length of database: 2,899,336
effective HSP length: 96
effective length of query: 760
effective length of database: 1,632,328
effective search space: 1240569280
effective search space used: 1240569280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)