BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644895|ref|NP_207065.1| chlorohydrolase
[Helicobacter pylori 26695]
(409 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J6P|A Chain A, Crystal Structure Of Conserved Hypothet... 44 4e-05
pdb|1PSK|H Chain H, The Crystal Structure Of An Fab Fragmen... 31 0.22
pdb|1LK3|H Chain H, Engineered Human Interleukin-10 Monomer... 29 0.85
pdb|1IGJ|B Chain B, Fab (Igg2a,Kappa) Fragment (26-10) Comp... 28 1.4
pdb|1RMF|H Chain H, R6.5 Murine Monoclonal Antibody Fab Fra... 28 2.5
pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed Wit... 27 3.2
pdb|2JEL|H Chain H, Jel42 FabHPR COMPLEX 27 4.2
pdb|2PCP|B Chain B, Antibody Fab Complexed With Phencyclidi... 27 4.2
pdb|1KYQ|A Chain A, Met8p: A Bifunctional Nad-Dependent Deh... 27 4.2
pdb|1A8P| Ferredoxin Reductase From Azotobacter Vinelandii 27 4.2
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus... 26 7.2
pdb|1FPN|2 Chain 2, Human Rhinovirus Serotype 2 (Hrv2) 26 7.2
pdb|1KIT| Vibrio Cholerae Neuraminidase 26 9.4
pdb|1A6T|B Chain B, Fab Fragment Of Mab1-Ia Monoclonal Anti... 26 9.4
>pdb|1J6P|A Chain A, Crystal Structure Of Conserved Hypothetical
Protein(Tm0936) From Thermotoga Maritima At 1.9 A
Resolution
Length = 418
Score = 43.5 bits (101), Expect = 4e-05
Identities = 41/126 (32%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 286 PFSNRLLSGQALDLERTKEAGLSVSVATDGLSSNISLSLLDELR--AFLLTHNMPLLELA 343
P SN L ++R E G V++ TDG +SN SL+L E R + L P
Sbjct: 263 PASNLKLGNGIAPVQRXIEHGXKVTLGTDGAASNNSLNLFFEXRLASLLQKAQNPRNLDV 322
Query: 344 KIALLGATRHGAKALALNNGEIEANKRADLSVFGFN-EKFTKEQAILQFLLHA--KEVEC 400
L T GA+A +G+IE ADL V + + Q I L+HA EV
Sbjct: 323 NTCLKXVTYDGAQAXGFKSGKIEEGWNADLVVIDLDLPEXFPVQNIKNHLVHAFSGEVFA 382
Query: 401 LFLGGK 406
+ GK
Sbjct: 383 TXVAGK 388
>pdb|1PSK|H Chain H, The Crystal Structure Of An Fab Fragment That Binds To The
Melanoma-Associated Gd2 Ganglioside
Length = 209
Score = 31.2 bits (69), Expect = 0.22
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 13/114 (11%)
Query: 225 FENFYQHFLKESHFKSL--------YKGANDYIDMFKDTHTLFVH-NQFASLEALKRIKS 275
F + H++K+SH KSL G +Y FK T TL VH + + L+ + S
Sbjct: 29 FTKYTMHWVKQSHGKSLEWIGDINPNNGGTNYNQKFKGTATLTVHKSSTTAYMELRSLTS 88
Query: 276 QVKNAFLITCPFSNRLLSGQALDLERTKEAGLSV----SVATDGLSSNISLSLL 325
+ + T + G L + K SV V D S ++L L
Sbjct: 89 EDSAVYYCTSKSFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSAVTLGCL 142
>pdb|1LK3|H Chain H, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
pdb|1LK3|I Chain I, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
Length = 219
Score = 29.3 bits (64), Expect = 0.85
Identities = 17/44 (38%), Positives = 24/44 (53%), Gaps = 8/44 (18%)
Query: 225 FENFYQHFLKESHFKSL--------YKGANDYIDMFKDTHTLFV 260
F +FY H++K+SH KSL G +Y + FK+ TL V
Sbjct: 29 FTDFYIHWVKQSHGKSLEWIGYINPNSGYTNYNEKFKNKATLTV 72
>pdb|1IGJ|B Chain B, Fab (Igg2a,Kappa) Fragment (26-10) Complex With Digoxin
pdb|1IGJ|D Chain D, Fab (Igg2a,Kappa) Fragment (26-10) Complex With Digoxin
pdb|1IGI|H Chain H, Fab (Igg2a,Kappa) Fragment (26-10)
Length = 218
Score = 28.5 bits (62), Expect = 1.4
Identities = 16/44 (36%), Positives = 22/44 (49%), Gaps = 8/44 (18%)
Query: 225 FENFYQHFLKESHFKSL--------YKGANDYIDMFKDTHTLFV 260
F +FY +++++SH KSL Y G Y FK TL V
Sbjct: 29 FTDFYMNWVRQSHGKSLDYIGYISPYSGVTGYNQKFKGKATLTV 72
>pdb|1RMF|H Chain H, R6.5 Murine Monoclonal Antibody Fab Fragment
Length = 216
Score = 27.7 bits (60), Expect = 2.5
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 20/120 (16%)
Query: 225 FENFYQHFLKESHFKSL--------YKGANDYIDMFKDTHTLFVHNQFASLEALKRIKSQ 276
F ++ H++KESH KSL Y G +Y FK T+ V ++ ++ L+ +
Sbjct: 29 FIDYAIHWVKESHAKSLEWIGVISAYSGDTNYNQKFKGKATMTV-DKSSNTAYLELARLT 87
Query: 277 VKNAFLITCPFSNRLL-------SGQALDLERTKEAGLSVS----VATDGLSSNISLSLL 325
+++ + C LL G L + K SV+ V D S+++L +L
Sbjct: 88 SEDSAIYYCARGGWLLLSFDYWGQGTTLTVSSAKTTAPSVTPLAPVCGDTTGSSVTLGVL 147
>pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed With Mupirocin
pdb|1ILE| Isoleucyl-Trna Synthetase
pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
Length = 821
Score = 27.3 bits (59), Expect = 3.2
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 23/92 (25%)
Query: 162 FKELKDLEDKKLKAALAVHAPYSVQKDMALS----------VIQLAKDSQSL--LSTHFL 209
F+ELK K L H PY Q ++A + VI + DS ++ S H+
Sbjct: 473 FQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYP 532
Query: 210 ESLEEL-----------EWVENSKGWFENFYQ 230
EE+ E ++ ++GWF + +Q
Sbjct: 533 FEHEEVFRESFPADFIAEGIDQTRGWFNSLHQ 564
>pdb|2JEL|H Chain H, Jel42 FabHPR COMPLEX
Length = 218
Score = 26.9 bits (58), Expect = 4.2
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 225 FENFYQHFLKESHFKSL--------YKGANDYIDMFKDTHTLFV 260
F + H++K+SH KSL Y G +Y FK T+ V
Sbjct: 29 FTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTV 72
>pdb|2PCP|B Chain B, Antibody Fab Complexed With Phencyclidine
pdb|2PCP|D Chain D, Antibody Fab Complexed With Phencyclidine
Length = 215
Score = 26.9 bits (58), Expect = 4.2
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 225 FENFYQHFLKESHFKSL--------YKGANDYIDMFKDTHTLFV 260
F ++Y H+ K+SH KSL G N Y FK TL V
Sbjct: 29 FTDYYIHWNKQSHGKSLEWIGYIYPNNGGNGYNHKFKGKATLTV 72
>pdb|1KYQ|A Chain A, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis.
pdb|1KYQ|B Chain B, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis.
pdb|1KYQ|C Chain C, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis
Length = 274
Score = 26.9 bits (58), Expect = 4.2
Identities = 17/60 (28%), Positives = 30/60 (49%), Gaps = 1/60 (1%)
Query: 307 LSVSVATDGLSSNISLSLLDELRAFLLTHNMPLLELAKIALLGATRHGAKALALNNGEIE 366
L + ++T+GLS + DE+R LE A + LG R G + LA ++ +++
Sbjct: 160 LQILISTNGLSPRFGALVRDEIRNLFTQXGDLALEDA-VVKLGELRRGIRLLAPDDKDVK 218
>pdb|1A8P| Ferredoxin Reductase From Azotobacter Vinelandii
Length = 258
Score = 26.9 bits (58), Expect = 4.2
Identities = 10/26 (38%), Positives = 17/26 (64%)
Query: 12 LCNEKCEVLEDYGVVFDEKIVEIGDY 37
+ +E CEVL+ +G+ ++ E GDY
Sbjct: 224 MLDESCEVLDGFGLKISPRMGEPGDY 249
>pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
Length = 686
Score = 26.2 bits (56), Expect = 7.2
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 50 QFFENSVLLPAFINAHTHFEFSNNKASFDYGSFSGWLGSVLNNGGAILEN 99
+FF + VL+ N + + S + + GS++ +L +L G + N
Sbjct: 425 KFFNDVVLVAINRNTQSSYSISGLQTALPNGSYADYLSGLLGGNGISVSN 474
>pdb|1FPN|2 Chain 2, Human Rhinovirus Serotype 2 (Hrv2)
Length = 261
Score = 26.2 bits (56), Expect = 7.2
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 14/55 (25%)
Query: 198 KDSQSLLSTHFLESLEELEWVENSKGWF--------------ENFYQHFLKESHF 238
K SQ S++ +L + W +SKGW+ EN + H+L S +
Sbjct: 52 KPSQPDTSSNRFYTLRSVTWSSSSKGWWWKLPDALKDMGIFGENMFYHYLGRSGY 106
>pdb|1KIT| Vibrio Cholerae Neuraminidase
Length = 757
Score = 25.8 bits (55), Expect = 9.4
Identities = 10/26 (38%), Positives = 13/26 (49%)
Query: 77 FDYGSFSGWLGSVLNNGGAILENCQG 102
FD + GW+ NNG +L N G
Sbjct: 13 FDSPAKQGWMQDNTNNGSGVLTNADG 38
>pdb|1A6T|B Chain B, Fab Fragment Of Mab1-Ia Monoclonal Antibody To Human
Rhinovirus 14 Nim-Ia Site
pdb|1A6T|D Chain D, Fab Fragment Of Mab1-Ia Monoclonal Antibody To Human
Rhinovirus 14 Nim-Ia Site
Length = 217
Score = 25.8 bits (55), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (75%)
Query: 225 FENFYQHFLKESHFKSL 241
F +Y H++K+SH KSL
Sbjct: 29 FSTYYMHWVKQSHGKSL 45
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,151,496
Number of Sequences: 13198
Number of extensions: 84680
Number of successful extensions: 222
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 14
length of query: 409
length of database: 2,899,336
effective HSP length: 90
effective length of query: 319
effective length of database: 1,711,516
effective search space: 545973604
effective search space used: 545973604
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)