BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644896|ref|NP_207066.1| hypothetical protein
[Helicobacter pylori 26695]
(80 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna S... 28 0.23
pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recy... 25 1.2
pdb|2BBK|H Chain H, Methylamine Dehydrogenase (Madh) (E.C.1... 24 2.6
pdb|2MTA|H Chain H, Methylamine Dehydrogenase (E.C.1.4.99.3... 24 2.6
pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication In... 24 3.4
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosin... 24 3.4
pdb|1G60|A Chain A, Crystal Structure Of Methyltransferase ... 24 3.4
pdb|1IDR|A Chain A, Crystal Structure Of The Truncated-Hemo... 23 4.4
pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosph... 23 4.4
pdb|1CCW|B Chain B, Structure Of The Coenzyme B12 Dependent... 23 5.8
pdb|4ZNB|A Chain A, Metallo-Beta-Lactamase (C181s Mutant) >... 22 9.9
pdb|1ZNB|B Chain B, Metallo-Beta-Lactamase >gi|1942528|pdb|... 22 9.9
pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539... 22 9.9
pdb|1QBA| Bacterial Chitobiase, Glycosyl Hydrolase Family... 22 9.9
pdb|1C1K|A Chain A, Bacteriophage T4 Gene 59 Helicase Assem... 22 9.9
pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540... 22 9.9
>pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna Synthetase Complexed
With The Trna(Arg) And L-Arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
Complexed With The Trnaarg
pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
Length = 607
Score = 27.7 bits (60), Expect = 0.23
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Query: 7 KNTRKSDAKSVELEDLYHEFSEDKRSIFYFAPTNAHKD------------MLKAVDFFKE 54
K D +++++ + EFS +K I +A N D MLKA+D FKE
Sbjct: 253 KRMEDGDEEALKIWKRFREFSIEKY-IDTYARLNIKYDVYSGESQVSKESMLKAIDLFKE 311
Query: 55 KGHT 58
KG T
Sbjct: 312 KGLT 315
>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor
Length = 184
Score = 25.4 bits (54), Expect = 1.2
Identities = 17/57 (29%), Positives = 27/57 (46%), Gaps = 23/57 (40%)
Query: 18 ELEDLYHEFSEDKRSIFYFAPTNAHKDMLKAVDFFK--------EKGHTAYLDEVRV 66
ELED++ E A KDM KAV+++K + TA ++E++V
Sbjct: 4 ELEDIFKE---------------AEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKV 45
>pdb|2BBK|H Chain H, Methylamine Dehydrogenase (Madh) (E.C.1.4.99.3)
pdb|2BBK|J Chain J, Methylamine Dehydrogenase (Madh) (E.C.1.4.99.3)
Length = 355
Score = 24.3 bits (51), Expect = 2.6
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 54 EKGHTAYLDEVRVSTDEKDFLYEL 77
E GH +D + VS DEK LY L
Sbjct: 297 EMGHE--IDSINVSQDEKPLLYAL 318
>pdb|2MTA|H Chain H, Methylamine Dehydrogenase (E.C.1.4.99.3) Complex With
Amicyanin And Cytochrome C551i
Length = 373
Score = 24.3 bits (51), Expect = 2.6
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 54 EKGHTAYLDEVRVSTDEKDFLYEL 77
E GH +D + VS DEK LY L
Sbjct: 315 EMGHE--IDSINVSQDEKPLLYAL 336
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 23.9 bits (50), Expect = 3.4
Identities = 14/61 (22%), Positives = 27/61 (43%), Gaps = 5/61 (8%)
Query: 16 SVELEDLYHE-----FSEDKRSIFYFAPTNAHKDMLKAVDFFKEKGHTAYLDEVRVSTDE 70
+V++ED+ + SE ++ Y +++ FK K HT + +R +E
Sbjct: 242 AVKVEDILSDKRNKRTSEARKIAXYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVEEE 301
Query: 71 K 71
K
Sbjct: 302 K 302
>pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
Length = 514
Score = 23.9 bits (50), Expect = 3.4
Identities = 7/22 (31%), Positives = 14/22 (62%)
Query: 49 VDFFKEKGHTAYLDEVRVSTDE 70
+DF KE+ H +L+E+ ++
Sbjct: 163 IDFLKEEEHDCFLEEIMTKRED 184
>pdb|1G60|A Chain A, Crystal Structure Of Methyltransferase Mboii (Moraxella
Bovis)
pdb|1G60|B Chain B, Crystal Structure Of Methyltransferase Mboii (Moraxella
Bovis)
Length = 260
Score = 23.9 bits (50), Expect = 3.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 51 FFKEKGHTAYLDEVRVSTDEKD 72
F K K HT DEVRV + D
Sbjct: 122 FSKSKNHTFNYDEVRVPYESTD 143
>pdb|1IDR|A Chain A, Crystal Structure Of The Truncated-Hemoglobin-N From
Mycobacterium Tuberculosis
pdb|1IDR|B Chain B, Crystal Structure Of The Truncated-Hemoglobin-N From
Mycobacterium Tuberculosis
Length = 136
Score = 23.5 bits (49), Expect = 4.4
Identities = 13/40 (32%), Positives = 20/40 (49%)
Query: 13 DAKSVELEDLYHEFSEDKRSIFYFAPTNAHKDMLKAVDFF 52
+A V +ED Y D + +F+ TN + K V+FF
Sbjct: 23 EAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKQVEFF 62
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 23.5 bits (49), Expect = 4.4
Identities = 7/22 (31%), Positives = 14/22 (62%)
Query: 49 VDFFKEKGHTAYLDEVRVSTDE 70
+DF KE+ H +L+E+ ++
Sbjct: 163 IDFLKEEEHDRFLEEIMTKRED 184
>pdb|1CCW|B Chain B, Structure Of The Coenzyme B12 Dependent Enzyme Glutamate
Mutase From Clostridium Cochlearium
pdb|1CCW|D Chain D, Structure Of The Coenzyme B12 Dependent Enzyme Glutamate
Mutase From Clostridium Cochlearium
pdb|1I9C|B Chain B, Glutamate Mutase From Clostridium Cochlearium: Complex
With Adenosylcobalamin And Substrate
pdb|1I9C|D Chain D, Glutamate Mutase From Clostridium Cochlearium: Complex
With Adenosylcobalamin And Substrate
pdb|1CB7|B Chain B, Glutamate Mutase From Clostridium Cochlearium
Reconstituted With Methyl-Cobalamin
pdb|1CB7|D Chain D, Glutamate Mutase From Clostridium Cochlearium
Reconstituted With Methyl-Cobalamin
Length = 483
Score = 23.1 bits (48), Expect = 5.8
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 25 EFSEDKRSIFYFAPTNAHKDMLKAVDFFKE 54
EF + + + PT D+ +AVD+ K+
Sbjct: 12 EFHKQREEVLQQWPTGKEVDLQEAVDYLKK 41
>pdb|4ZNB|A Chain A, Metallo-Beta-Lactamase (C181s Mutant)
pdb|4ZNB|B Chain B, Metallo-Beta-Lactamase (C181s Mutant)
Length = 232
Score = 22.3 bits (46), Expect = 9.9
Identities = 7/31 (22%), Positives = 18/31 (57%)
Query: 36 FAPTNAHKDMLKAVDFFKEKGHTAYLDEVRV 66
F P + H D + + + ++KG +Y +++ +
Sbjct: 78 FIPNHWHGDCIGGLGYLQKKGVQSYANQMTI 108
>pdb|1ZNB|B Chain B, Metallo-Beta-Lactamase
pdb|1ZNB|A Chain A, Metallo-Beta-Lactamase
pdb|3ZNB|B Chain B, Metallo-Beta-Lactamase (Zn, Hg-Bound Form)
pdb|2ZNB|B Chain B, Metallo-Beta-Lactamase (Cadmium-Bound Form)
pdb|2ZNB|A Chain A, Metallo-Beta-Lactamase (Cadmium-Bound Form)
pdb|3ZNB|A Chain A, Metallo-Beta-Lactamase (Zn, Hg-Bound Form)
Length = 232
Score = 22.3 bits (46), Expect = 9.9
Identities = 7/31 (22%), Positives = 18/31 (57%)
Query: 36 FAPTNAHKDMLKAVDFFKEKGHTAYLDEVRV 66
F P + H D + + + ++KG +Y +++ +
Sbjct: 78 FIPNHWHGDCIGGLGYLQKKGVQSYANQMTI 108
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 22.3 bits (46), Expect = 9.9
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 29 DKRSIFYFAPTNAHKDMLKAVD 50
D+R +F FAP N ++ +VD
Sbjct: 664 DERKVFSFAPDNMPQNAETSVD 685
>pdb|1QBA| Bacterial Chitobiase, Glycosyl Hydrolase Family 20
pdb|1QBB| Bacterial Chitobiase Complexed With Chitobiose (Dinag)
Length = 858
Score = 22.3 bits (46), Expect = 9.9
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 29 DKRSIFYFAPTNAHKDMLKAVD 50
D+R +F FAP N ++ +VD
Sbjct: 664 DERKVFSFAPDNMPQNAETSVD 685
>pdb|1C1K|A Chain A, Bacteriophage T4 Gene 59 Helicase Assembly Protein
Length = 217
Score = 22.3 bits (46), Expect = 9.9
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 19 LEDLYHEFSEDKRSIFYFA 37
L+ + +F ED R+I+YF+
Sbjct: 106 LKQIKFKFEEDIRNIYYFS 124
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 22.3 bits (46), Expect = 9.9
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 29 DKRSIFYFAPTNAHKDMLKAVD 50
D+R +F FAP N ++ +VD
Sbjct: 664 DERKVFSFAPDNMPQNAETSVD 685
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,934
Number of Sequences: 13198
Number of extensions: 13939
Number of successful extensions: 48
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 16
length of query: 80
length of database: 2,899,336
effective HSP length: 56
effective length of query: 24
effective length of database: 2,160,248
effective search space: 51845952
effective search space used: 51845952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)