BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644897|ref|NP_207067.1| conserved hypothetical
ATP-binding protein [Helicobacter pylori 26695]
         (437 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1FIQ|C  Chain C, Crystal Structure Of Xanthine Oxidase F...    27  4.5
pdb|1FO4|A  Chain A, Crystal Structure Of Xanthine Dehydroge...    27  4.5

>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
          Length = 763

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 29/135 (21%), Positives = 57/135 (41%), Gaps = 8/135 (5%)

Query: 101 RNVSKISQVIHKEKAVE---VAIDYDESAYAFEFFEKKAQIRSLLNISIGCDKKCAYCIV 157
           +N+ K   + H  + +E   V   +DE   + +++ +K+++      +  C KK   CI+
Sbjct: 375 KNMYKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKEN--CWKKRGLCII 432

Query: 158 PHTRGKEISIPMDLILKEAEKLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKL 217
           P   G   ++P    L +A  L +  T   +L+       G    ++  +V    L   +
Sbjct: 433 PTKFGISFTVP---FLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPI 489

Query: 218 SEIQGIERIRFTSPH 232
           S+I   E    T P+
Sbjct: 490 SKIYISETSTNTVPN 504



>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
            Bovine Milk
 pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
            Bovine Milk
          Length = 1332

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 29/135 (21%), Positives = 57/135 (41%), Gaps = 8/135 (5%)

Query: 101  RNVSKISQVIHKEKAVE---VAIDYDESAYAFEFFEKKAQIRSLLNISIGCDKKCAYCIV 157
            +N+ K   + H  + +E   V   +DE   + +++ +K+++      +  C KK   CI+
Sbjct: 944  KNMYKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKEN--CWKKRGLCII 1001

Query: 158  PHTRGKEISIPMDLILKEAEKLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKL 217
            P   G   ++P    L +A  L +  T   +L+       G    ++  +V    L   +
Sbjct: 1002 PTKFGISFTVP---FLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPI 1058

Query: 218  SEIQGIERIRFTSPH 232
            S+I   E    T P+
Sbjct: 1059 SKIYISETSTNTVPN 1073



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.317    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,418,338
Number of Sequences: 13198
Number of extensions: 97351
Number of successful extensions: 241
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 2
length of query: 437
length of database: 2,899,336
effective HSP length: 91
effective length of query: 346
effective length of database: 1,698,318
effective search space: 587618028
effective search space used: 587618028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)