BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644898|ref|NP_207068.1| hypothetical protein
[Helicobacter pylori 26695]
(162 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1RIL| Ribonuclease H (E.C.3.1.26.4) 27 1.1
pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furios... 26 2.5
pdb|1FMD|1 Chain 1, Foot And Mouth Disease Virus Type C-S8c1 26 2.5
pdb|1JL2|A Chain A, Crystal Structure Of Tceo Rnase H-A Chi... 25 4.3
pdb|1I44|A Chain A, Crystallographic Studies Of An Activati... 25 5.7
pdb|1IRK| Insulin Receptor (Tyrosine Kinase Domain) Mutan... 25 5.7
pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosin... 25 5.7
pdb|1JWG|A Chain A, Vhs Domain Of Human Gga1 Complexed With... 24 7.4
pdb|1CQU|A Chain A, Solution Structure Of The N-Terminal Do... 24 7.4
pdb|487D|K Chain K, Seven Ribosomal Proteins Fitted To A Cr... 24 7.4
pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Redu... 24 9.7
pdb|1G0O|C Chain C, Structure Of Trihydroxynaphthalene Redu... 24 9.7
>pdb|1RIL| Ribonuclease H (E.C.3.1.26.4)
Length = 166
Score = 26.9 bits (58), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (67%)
Query: 48 VKVLIEGLKRLKEGCDVAITPD 69
+K IEGLK LKE C+V + D
Sbjct: 53 LKAAIEGLKALKEPCEVDLYTD 74
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 25.8 bits (55), Expect = 2.5
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 19/95 (20%)
Query: 46 GGVKVLIEGLKRLKEGCDVAITPDGPKGPRHSIADGVIALAQKSGVGISA-CRVVCKNAW 104
G ++ +I L + + D+ +TP+ + G+ ++A + N +
Sbjct: 91 GALRTIISYLGNIDDSGDIPVTPEE---------------VYRIGISVTAKIPTIVANWY 135
Query: 105 RLNTWDQFEIPKP---FSEVYYYMLESVIIPKEWE 136
R+ ++ PK + + YML PKEWE
Sbjct: 136 RIKNGLEYVPPKEKLSHAANFLYMLHGEEPPKEWE 170
>pdb|1FMD|1 Chain 1, Foot And Mouth Disease Virus Type C-S8c1
Length = 208
Score = 25.8 bits (55), Expect = 2.5
Identities = 19/56 (33%), Positives = 25/56 (43%), Gaps = 4/56 (7%)
Query: 21 HFDGSIAAGLFESFGFKNIRGSSKKGGVKVLIEGLKRLKEGCDVAITPDGPKGPRH 76
H + AA L SF F G+ K + L+ +KR + C I P P G RH
Sbjct: 146 HLTTTHAAHLPTSFNF----GAVKAETITELLVRMKRAELYCPRPILPIQPTGDRH 197
>pdb|1JL2|A Chain A, Crystal Structure Of Tceo Rnase H-A Chimera Combining
The Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
pdb|1JL2|D Chain D, Crystal Structure Of Tceo Rnase H-A Chimera Combining
The Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
pdb|1JL2|B Chain B, Crystal Structure Of Tceo Rnase H-A Chimera Combining
The Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
pdb|1JL2|C Chain C, Crystal Structure Of Tceo Rnase H-A Chimera Combining
The Folding Core From T. Thermophilus Rnase H And The
Remaining Region Of E. Coli Rnase H
Length = 156
Score = 25.0 bits (53), Expect = 4.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 29 GLFESFGFKNIRGSSKKGGVKVLIEGLKRLKEGCDVAITPD 69
G ++F R ++ + +K IEGLK LKE +V + D
Sbjct: 30 GREKTFSAGYTRTTNNRMELKAAIEGLKALKEPAEVDLYTD 70
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 24.6 bits (52), Expect = 5.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 128 SVIIPKEWELSRAK 141
SV +P EWE+SR K
Sbjct: 5 SVFVPDEWEVSREK 18
>pdb|1IRK| Insulin Receptor (Tyrosine Kinase Domain) Mutant With Cys 981
Replaced By Ser And Tyr 984 Replaced By Phe (C981s,
Y984f)
Length = 306
Score = 24.6 bits (52), Expect = 5.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 128 SVIIPKEWELSRAK 141
SV +P EWE+SR K
Sbjct: 5 SVFVPDEWEVSREK 18
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 24.6 bits (52), Expect = 5.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 128 SVIIPKEWELSRAK 141
SV +P EWE+SR K
Sbjct: 5 SVFVPDEWEVSREK 18
>pdb|1JWG|A Chain A, Vhs Domain Of Human Gga1 Complexed With Cation-Independent
M6pr C-Terminal Peptide
pdb|1JWG|B Chain B, Vhs Domain Of Human Gga1 Complexed With Cation-Independent
M6pr C-Terminal Peptide
pdb|1JWF|A Chain A, Crystal Structure Of Human Gga1 Vhs Domain
Length = 147
Score = 24.3 bits (51), Expect = 7.4
Identities = 14/43 (32%), Positives = 23/43 (52%), Gaps = 3/43 (6%)
Query: 110 DQFEIPKPFSEVYYYMLESVIIPKEWELSRAKEYLKTRMDSVG 152
+ FE P + + + ++S P+EWE +A L+T M S G
Sbjct: 39 EDFEGPPLATRLLAHKIQS---PQEWEAIQALTVLETCMKSCG 78
>pdb|1CQU|A Chain A, Solution Structure Of The N-Terminal Domain Of Ribosomal
Protein L9
Length = 56
Score = 24.3 bits (51), Expect = 7.4
Identities = 11/35 (31%), Positives = 19/35 (53%), Gaps = 3/35 (8%)
Query: 37 KNIRGSSKKGGVKVLIEGLKR---LKEGCDVAITP 68
K+++G KKG +K + +G K+G + TP
Sbjct: 7 KDVKGKGKKGEIKNVADGYANNFLFKQGLAIEATP 41
>pdb|487D|K Chain K, Seven Ribosomal Proteins Fitted To A Cryo-Electron
Microscopic Map Of The Large 50s Subunit At 7.5
Angstroms Resolution
pdb|1DIV| Ribosomal Protein L9
pdb|1GIY|K Chain K, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules
Are In The File 1gix
Length = 149
Score = 24.3 bits (51), Expect = 7.4
Identities = 11/35 (31%), Positives = 19/35 (53%), Gaps = 3/35 (8%)
Query: 37 KNIRGSSKKGGVKVLIEGLKR---LKEGCDVAITP 68
K+++G KKG +K + +G K+G + TP
Sbjct: 7 KDVKGKGKKGEIKNVADGYANNFLFKQGLAIEATP 41
>pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
pdb|1YBV|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
Length = 283
Score = 23.9 bits (50), Expect = 9.7
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 70 GPKGPRHSIADGVIALAQKSGVGI 93
GP GP+ + +G +AL +G GI
Sbjct: 18 GPLGPQSASLEGKVALVTGAGRGI 41
>pdb|1G0O|C Chain C, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|D Chain D, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0N|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-Nitro-Inden-1-One
pdb|1G0O|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1DOH|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-Nitro-Inden-1-One
pdb|1G0N|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
Length = 283
Score = 23.9 bits (50), Expect = 9.7
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 70 GPKGPRHSIADGVIALAQKSGVGI 93
GP GP+ + +G +AL +G GI
Sbjct: 18 GPLGPQSASLEGKVALVTGAGRGI 41
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.139 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,021,186
Number of Sequences: 13198
Number of extensions: 39863
Number of successful extensions: 87
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 12
length of query: 162
length of database: 2,899,336
effective HSP length: 81
effective length of query: 81
effective length of database: 1,830,298
effective search space: 148254138
effective search space used: 148254138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)