BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644899|ref|NP_207069.1| hypothetical protein
[Helicobacter pylori 26695]
(327 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1TIP|A Chain A, The Bisphosphatase Domain Of The Bifunc... 26 5.5
pdb|1DDG|A Chain A, Crystal Structure Of Sir-Fp60 >gi|11513... 26 5.5
pdb|1GW5|B Chain B, Ap2 Clathrin Adaptor Core 26 5.5
pdb|1FBT|A Chain A, The Bisphosphatase Domain Of The Bifunc... 26 7.1
pdb|1K83|K Chain K, Crystal Structure Of Yeast Rna Polymera... 25 9.3
pdb|1J8M|F Chain F, Signal Recognition Particle Conserved G... 25 9.3
pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved G... 25 9.3
>pdb|1TIP|A Chain A, The Bisphosphatase Domain Of The Bifunctional Rat Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|1TIP|B Chain B, The Bisphosphatase Domain Of The Bifunctional Rat Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Length = 191
Score = 26.2 bits (56), Expect = 5.5
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 75 PYTYFSAMSKAKEVLCEKQAFEQIKQENQDYHACEVNQKY 114
PY + A+++ +CE+ +E+I++ + A KY
Sbjct: 69 PYEQWKALNEIDAGVCEEMTYEEIQEHYPEEFALRDQDKY 108
>pdb|1DDG|A Chain A, Crystal Structure Of Sir-Fp60
pdb|1DDG|B Chain B, Crystal Structure Of Sir-Fp60
pdb|1DDI|A Chain A, Crystal Structure Of Sir-Fp60
Length = 374
Score = 26.2 bits (56), Expect = 5.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 200 DFMGMDNEAVDLFLSEIQ 217
+F GMD EA D FLSE++
Sbjct: 347 EFGGMDTEAADEFLSELR 364
>pdb|1GW5|B Chain B, Ap2 Clathrin Adaptor Core
Length = 591
Score = 26.2 bits (56), Expect = 5.5
Identities = 17/57 (29%), Positives = 28/57 (48%), Gaps = 4/57 (7%)
Query: 35 IKNDRIKEKFFKTFETKVETKNGEVPIQALKIARTYSQKYPYTYFSAMSKAKEVLCE 91
IK ++ E+ T ++TK V +A+ + R +KYP Y S ++ LCE
Sbjct: 382 IKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIA----TLCE 434
>pdb|1FBT|A Chain A, The Bisphosphatase Domain Of The Bifunctional Rat Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|1FBT|B Chain B, The Bisphosphatase Domain Of The Bifunctional Rat Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Length = 190
Score = 25.8 bits (55), Expect = 7.1
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 75 PYTYFSAMSKAKEVLCEKQAFEQIKQENQDYHACEVNQKY 114
PY + A+++ +CE+ +E+I++ + A KY
Sbjct: 68 PYEQWKALNEIDAGVCEEXTYEEIQEHYPEEFALRDQDKY 107
>pdb|1K83|K Chain K, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
pdb|1I50|K Chain K, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I3Q|K Chain K, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I6H|K Chain K, Rna Polymerase Ii Elongation Complex
Length = 120
Score = 25.4 bits (54), Expect = 9.3
Identities = 16/52 (30%), Positives = 24/52 (45%), Gaps = 8/52 (15%)
Query: 24 DHNLLSTQVIRIKNDR--------IKEKFFKTFETKVETKNGEVPIQALKIA 67
DH L + + NDR ++ FF F+ +++T G P ALK A
Sbjct: 39 DHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNA 90
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 25.4 bits (54), Expect = 9.3
Identities = 21/61 (34%), Positives = 30/61 (48%), Gaps = 8/61 (13%)
Query: 195 ESKEEDFMGMDNEAVDLFLSEIQEDI--DSL------EEAIGLDSSKDNSEKITEDAYSL 246
E E+D +G+ V+ FLSE E I D+ EEA L+ K+ E I D +L
Sbjct: 159 EPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTL 218
Query: 247 I 247
+
Sbjct: 219 V 219
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 25.4 bits (54), Expect = 9.3
Identities = 21/61 (34%), Positives = 30/61 (48%), Gaps = 8/61 (13%)
Query: 195 ESKEEDFMGMDNEAVDLFLSEIQEDI--DSL------EEAIGLDSSKDNSEKITEDAYSL 246
E E+D +G+ V+ FLSE E I D+ EEA L+ K+ E I D +L
Sbjct: 159 EPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTL 218
Query: 247 I 247
+
Sbjct: 219 V 219
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.138 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,690,090
Number of Sequences: 13198
Number of extensions: 66931
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 184
Number of HSP's gapped (non-prelim): 8
length of query: 327
length of database: 2,899,336
effective HSP length: 88
effective length of query: 239
effective length of database: 1,737,912
effective search space: 415360968
effective search space used: 415360968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)