BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644900|ref|NP_207070.1| hypothetical protein
[Helicobacter pylori 26695]
(177 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agal... 27 1.0
pdb|1N3U|A Chain A, Crystal Structure Of Human Heme Oxygena... 27 1.3
pdb|1QQ8|A Chain A, X-Ray Crystal Structure Of Human Heme O... 27 1.3
pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Str... 25 5.1
pdb|1TDT|B Chain B, Three-Dimensional Structure Of Tetrahyd... 25 5.1
pdb|1KGQ|A Chain A, Crystal Structure Of Tetrahydrodipicoli... 25 5.1
pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-... 25 5.1
pdb|3CMS| Chymosin B (Formerly Known As Rennin) (E.C.3.4.... 25 6.6
pdb|1IRM|A Chain A, Crystal Structure Of Apo Heme Oxygenase... 24 8.6
>pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution
Length = 814
Score = 27.3 bits (59), Expect = 1.0
Identities = 16/60 (26%), Positives = 26/60 (42%), Gaps = 7/60 (11%)
Query: 114 DQQSVVVSGKTPSKEAFYFLFQNKLNPMFDYSRAEFFPLSDGWFNFVSTNFSNSLLIKNP 173
D +SV + K P + Y F+N D R E G +N ++ N+ ++ NP
Sbjct: 654 DTKSVFLESKEPGRNIGYIFFKNS---TIDIERKE----QTGTWNSINRTSKNTSIVSNP 706
>pdb|1N3U|A Chain A, Crystal Structure Of Human Heme Oxygenase 1 (Ho-1) In
Complex With Its Substrate Heme, Crystal Form B
pdb|1N3U|B Chain B, Crystal Structure Of Human Heme Oxygenase 1 (Ho-1) In
Complex With Its Substrate Heme, Crystal Form B
Length = 233
Score = 26.9 bits (58), Expect = 1.3
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 46 TQDNASSLTIQERLYRHEISRLQVKTDETLKLIKEAKKRLNYNDDIRDVLQGLL 99
T N +S T ++LYR ++ L++ ++I+EAK N + + LQ LL
Sbjct: 168 TFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELL 221
>pdb|1QQ8|A Chain A, X-Ray Crystal Structure Of Human Heme Oxygenase-1 (Ho-1)
In Complex With Its Substrate Heme
pdb|1QQ8|B Chain B, X-Ray Crystal Structure Of Human Heme Oxygenase-1 (Ho-1)
In Complex With Its Substrate Heme
Length = 214
Score = 26.9 bits (58), Expect = 1.3
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 46 TQDNASSLTIQERLYRHEISRLQVKTDETLKLIKEAKKRLNYNDDIRDVLQGLL 99
T N +S T ++LYR ++ L++ ++I+EAK N + + LQ LL
Sbjct: 159 TFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELL 212
>pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Structure
Length = 314
Score = 25.0 bits (53), Expect = 5.1
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 74 TLKLIKEAKKRLNYNDDIRDVLQGLLNI---------VPDSITINSIEIDQQSVVVSGKT 124
T L+ + DDI ++ Q LLN+ PD + + + I + + + G +
Sbjct: 225 TFSLVDTCLVLMEKGDDI-NIKQVLLNMRKYRMGLIQTPDQLRFSYMAIIEGAKCIKGDS 283
Query: 125 PSKEAFYFLFQNKLNPMFDYS 145
++ + L + L+P FD+S
Sbjct: 284 SIQKRWKELSKEDLSPAFDHS 304
>pdb|1TDT|B Chain B, Three-Dimensional Structure Of Tetrahydrodipicolinate-N-
Succinlytransferase
pdb|1TDT|C Chain C, Three-Dimensional Structure Of Tetrahydrodipicolinate-N-
Succinlytransferase
pdb|1TDT|A Chain A, Three-Dimensional Structure Of Tetrahydrodipicolinate-N-
Succinlytransferase
Length = 259
Score = 25.0 bits (53), Expect = 5.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 117 SVVVSGKTPSKEAFYFLF 134
SVVVSG PSK+ Y L+
Sbjct: 231 SVVVSGNLPSKDGSYSLY 248
>pdb|1KGQ|A Chain A, Crystal Structure Of Tetrahydrodipicolinate N-
Succinyltransferase In Complex With L-2-Aminopimelate
And Succinamide-Coa
pdb|3TDT| Complex Of Tetrahydrodipicolinate N-Succinyltransferase With
2-Amino-6-Oxopimelate And Coenzyme A
pdb|1KGT|A Chain A, Crystal Structure Of Tetrahydrodipicolinate N-
Succinyltransferase In Complex With Pimelate And
Succinyl- Coa
Length = 274
Score = 25.0 bits (53), Expect = 5.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 117 SVVVSGKTPSKEAFYFLF 134
SVVVSG PSK+ Y L+
Sbjct: 231 SVVVSGNLPSKDGSYSLY 248
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS| Chymosin B (Formerly Known As Rennin) (E.C.3.4.23.4)
pdb|4CMS| Chymosin B (Formerly Known As Rennin) (E.C.3.4.23.4)
Length = 323
Score = 25.0 bits (53), Expect = 5.1
Identities = 18/65 (27%), Positives = 32/65 (48%), Gaps = 3/65 (4%)
Query: 95 LQGLLNIVPDSITINSIEIDQQSVVVSGKTPSKEAFYFLFQNKLNPMFDYSRAEF-FPLS 153
+QG+L D++T+++I QQ+V +S + P Y F L + +E+ P+
Sbjct: 82 MQGILGY--DTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILGMAYPSLASEYSIPVF 139
Query: 154 DGWFN 158
D N
Sbjct: 140 DNMMN 144
>pdb|3CMS| Chymosin B (Formerly Known As Rennin) (E.C.3.4.23.4) Mutant With
Val 111 Replaced By Phe (V111F)
Length = 323
Score = 24.6 bits (52), Expect = 6.6
Identities = 18/65 (27%), Positives = 32/65 (48%), Gaps = 3/65 (4%)
Query: 95 LQGLLNIVPDSITINSIEIDQQSVVVSGKTPSKEAFYFLFQNKLNPMFDYSRAEF-FPLS 153
+QG+L D++T+++I QQ+V +S + P Y F L + +E+ P+
Sbjct: 82 MQGILGY--DTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVF 139
Query: 154 DGWFN 158
D N
Sbjct: 140 DNMMN 144
>pdb|1IRM|A Chain A, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1IRM|B Chain B, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1IRM|C Chain C, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1DVE|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme
Length = 267
Score = 24.3 bits (51), Expect = 8.6
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 34 GLVWFMHNAIKSTQDNASSLTIQERLYRHEISRLQVKTDETLKLIKEAKKRLNYNDDIRD 93
GL +F +I DN + ++LYR ++ L++ + ++ +EAK N ++ +
Sbjct: 163 GLAFFTFPSI----DNPTKF---KQLYRARMNTLEMTPEVKHRVTEEAKTAFLLNIELFE 215
Query: 94 VLQGLL 99
LQ LL
Sbjct: 216 ELQALL 221
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.138 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 927,754
Number of Sequences: 13198
Number of extensions: 33601
Number of successful extensions: 96
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 10
length of query: 177
length of database: 2,899,336
effective HSP length: 82
effective length of query: 95
effective length of database: 1,817,100
effective search space: 172624500
effective search space used: 172624500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)