BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644901|ref|NP_207071.1| hypothetical protein
[Helicobacter pylori 26695]
(179 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BG4| Xylanase From Penicillium Simplicissimum >gi|49... 26 2.3
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamid... 26 3.0
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 24 8.8
pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essen... 24 8.8
pdb|1LW7|A Chain A, Nadr Protein From Haemophilus Influenzae 24 8.8
pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Compl... 24 8.8
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Co... 24 8.8
>pdb|1BG4| Xylanase From Penicillium Simplicissimum
pdb|1B31|A Chain A, Xylanase From Penicillium Simplicissimum, Native With
Peg200 As Cryoprotectant
pdb|1B3X|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotriose
pdb|1B30|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
1,2-(4-Deoxy-Beta-L-Threo-Hex-4-Enopyranosyluronic
Acid)-Beta-1,4-Xylotriose)
pdb|1B3Z|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylopentaose
pdb|1B3V|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylose
pdb|1B3Y|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotetraose
pdb|1B3W|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylobiose
Length = 302
Score = 26.2 bits (56), Expect = 2.3
Identities = 11/40 (27%), Positives = 22/40 (54%)
Query: 59 KKSVLEYAQRHFETALTNYRNQKETSESLLKIFNDEESKR 98
K +++ + H T +T Y+ + + L +IFN++ S R
Sbjct: 102 KNTLISVLKNHITTVMTRYKGKIYAWDVLNEIFNEDGSLR 141
>pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
Length = 478
Score = 25.8 bits (55), Expect = 3.0
Identities = 13/46 (28%), Positives = 24/46 (51%)
Query: 55 EENRKKSVLEYAQRHFETALTNYRNQKETSESLLKIFNDEESKRIL 100
EE K++ ++Y F A + + +E +KI D +++RIL
Sbjct: 376 EEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERIL 421
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 24.3 bits (51), Expect = 8.8
Identities = 11/40 (27%), Positives = 20/40 (49%)
Query: 127 FFIMARASELEKTYLFFTLINKYLPSAQSQLPLKISKDDE 166
++++A ASE + L N Y + +P+ +DDE
Sbjct: 290 YYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDE 329
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 24.3 bits (51), Expect = 8.8
Identities = 11/40 (27%), Positives = 20/40 (49%)
Query: 127 FFIMARASELEKTYLFFTLINKYLPSAQSQLPLKISKDDE 166
++++A ASE + L N Y + +P+ +DDE
Sbjct: 290 YYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDE 329
>pdb|1LW7|A Chain A, Nadr Protein From Haemophilus Influenzae
Length = 365
Score = 24.3 bits (51), Expect = 8.8
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 78 RNQKETSESLLKIFNDEESKRILEKILKKCFDAYKI 113
+N E + L+ ++ ++ +++LKK D YK+
Sbjct: 285 KNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKV 320
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 24.3 bits (51), Expect = 8.8
Identities = 11/40 (27%), Positives = 20/40 (49%)
Query: 127 FFIMARASELEKTYLFFTLINKYLPSAQSQLPLKISKDDE 166
++++A ASE + L N Y + +P+ +DDE
Sbjct: 290 YYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDE 329
>pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 24.3 bits (51), Expect = 8.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 7 SHLDREQSGDVGFIIKNLVFLGVFSLLGWLNTEYFLWPSMLELKK 51
SH+DR G FI N+V G ++L L W ++ E KK
Sbjct: 85 SHVDRSIDGPAAFIETNIV--GTYTL---LEAARAYWNALTEDKK 124
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.138 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 883,779
Number of Sequences: 13198
Number of extensions: 30816
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 92
Number of HSP's gapped (non-prelim): 7
length of query: 179
length of database: 2,899,336
effective HSP length: 82
effective length of query: 97
effective length of database: 1,817,100
effective search space: 176258700
effective search space used: 176258700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)