BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644902|ref|NP_207072.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(132 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiqui... 25 2.3
pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9o... 25 2.3
pdb|1H78|A Chain A, Structural Basis For Allosteric Substra... 25 3.9
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamid... 25 3.9
pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Compl... 24 5.0
pdb|1C44|A Chain A, Sterol Carrier Protein 2 (Scp2) From Ra... 24 6.6
pdb|1QND|A Chain A, Sterol Carrier Protein-2, Nmr, 20 Struc... 24 6.6
pdb|1GCX|A Chain A, Crystal Structure Of Family B Dna Polym... 24 6.6
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
Length = 358
Score = 25.4 bits (54), Expect = 2.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 100 FWEGVKTFSKEQKEAFCQSCPG 121
FWE V +F+ EQK F Q G
Sbjct: 273 FWEIVHSFTDEQKRLFLQFTTG 294
>pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon
Length = 775
Score = 25.4 bits (54), Expect = 2.3
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 3 DFDFSFNPKACEGCGAKCCVGESG 26
+FDF++ K CE G K +G G
Sbjct: 213 NFDFAYLKKRCEELGIKFTLGRDG 236
>pdb|1H78|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dctp.
pdb|1H7A|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Datp
pdb|1H77|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dgtp
pdb|1H79|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dttp
pdb|1H7B|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases,
Native Nrdd
Length = 605
Score = 24.6 bits (52), Expect = 3.9
Identities = 25/97 (25%), Positives = 40/97 (40%), Gaps = 5/97 (5%)
Query: 22 VGESGYIFLNIQEMQQISAFLKLELEEFSQKYVKKVGYKFSLLEKDAKELGLACVFLDLE 81
+G G LNI + I + ++ +++ ++ G+ FSL A+ L LD E
Sbjct: 399 LGYIGIHELNILVGRDIGREILTKMNAHLKQWTERTGFAFSLYSTPAENLCYRFCKLDTE 458
Query: 82 TKKCQIYSVRPKQCQTFPFW----EGVKTFSKEQKEA 114
K + V K T F E + F K +EA
Sbjct: 459 -KYGSVKDVTDKGWYTNSFHVSVEENITPFEKISREA 494
>pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
Length = 478
Score = 24.6 bits (52), Expect = 3.9
Identities = 12/35 (34%), Positives = 20/35 (56%)
Query: 32 IQEMQQISAFLKLELEEFSQKYVKKVGYKFSLLEK 66
++ QI A + E+ + +QK++KK G F L K
Sbjct: 212 VEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTK 246
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
Length = 460
Score = 24.3 bits (51), Expect = 5.0
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 60 KFSLLEKDAKELGLACVFLDLETKKCQIYSVRPKQC 95
+ +L + ++G+ CV L+T C+I + + C
Sbjct: 59 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
>pdb|1C44|A Chain A, Sterol Carrier Protein 2 (Scp2) From Rabbit
Length = 123
Score = 23.9 bits (50), Expect = 6.6
Identities = 10/26 (38%), Positives = 18/26 (68%)
Query: 42 LKLELEEFSQKYVKKVGYKFSLLEKD 67
++ +LEE +++VKK+G F+ KD
Sbjct: 16 IEKKLEEEGEQFVKKIGGIFAFKVKD 41
>pdb|1QND|A Chain A, Sterol Carrier Protein-2, Nmr, 20 Structures
Length = 123
Score = 23.9 bits (50), Expect = 6.6
Identities = 10/26 (38%), Positives = 18/26 (68%)
Query: 42 LKLELEEFSQKYVKKVGYKFSLLEKD 67
++ +LEE +++VKK+G F+ KD
Sbjct: 16 IEKKLEEEGEQFVKKIGGIFAFKVKD 41
>pdb|1GCX|A Chain A, Crystal Structure Of Family B Dna Polymerase From
Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1
Length = 774
Score = 23.9 bits (50), Expect = 6.6
Identities = 9/24 (37%), Positives = 13/24 (53%)
Query: 3 DFDFSFNPKACEGCGAKCCVGESG 26
+FDF++ K CE G +G G
Sbjct: 213 NFDFAYLKKRCEKLGINFALGRDG 236
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 752,530
Number of Sequences: 13198
Number of extensions: 26856
Number of successful extensions: 66
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 8
length of query: 132
length of database: 2,899,336
effective HSP length: 78
effective length of query: 54
effective length of database: 1,869,892
effective search space: 100974168
effective search space used: 100974168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)