BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644904|ref|NP_207074.1| hypothetical protein
[Helicobacter pylori 26695]
         (185 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1CLE|A  Chain A, Esterase, SubstratePRODUCT-Bound Mol_id...    28  0.83
pdb|1I4N|A  Chain A, Crystal Structure Of Indoleglycerol Pho...    27  1.1
pdb|1J5T|A  Chain A, Crystal Structure Of Indole-3-Glycerol ...    27  1.1
pdb|1KGS|A  Chain A, Crystal Structure At 1.50 A Of An OmprP...    27  1.4
pdb|1LF1|A  Chain A, Crystal Structure Of Cel5 From Alkaloph...    25  4.1

>pdb|1CLE|A Chain A, Esterase, SubstratePRODUCT-Bound Mol_id: 1; Molecule:
           Cholesterol Esterase; Chain: A, B; Heterogen:
           Cholesteryl Linoleate
 pdb|1CLE|B Chain B, Esterase, SubstratePRODUCT-Bound Mol_id: 1; Molecule:
           Cholesterol Esterase; Chain: A, B; Heterogen:
           Cholesteryl Linoleate
          Length = 534

 Score = 27.7 bits (60), Expect = 0.83
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 39  VIPQTKDCVFVTPDEVLEKLLKENTHTDCVIVNFKGLYEIGAPSVF 84
           V+PQ++DC+  T + V     K   +   ++  F G +EIG+P++F
Sbjct: 90  VLPQSEDCL--TINVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIF 133



>pdb|1I4N|A Chain A, Crystal Structure Of Indoleglycerol Phosphate Synthase
           From Thermotoga Maritima
 pdb|1I4N|B Chain B, Crystal Structure Of Indoleglycerol Phosphate Synthase
           From Thermotoga Maritima
          Length = 251

 Score = 27.3 bits (59), Expect = 1.1
 Identities = 15/58 (25%), Positives = 31/58 (52%), Gaps = 1/58 (1%)

Query: 100 IVHQDLFISHYQLLESLVQGSDGVVLDEELLK-EDLKGMVEFSWRLGLSVFVETHKQD 156
           I+ +D +I   Q+  +   G+D +++   +L  E +K + E +  LG+   VE H ++
Sbjct: 104 ILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSRE 161



>pdb|1J5T|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
           (Tm0140) From Thermotoga Maritima At 3.0 A Resolution
          Length = 242

 Score = 27.3 bits (59), Expect = 1.1
 Identities = 15/58 (25%), Positives = 31/58 (52%), Gaps = 1/58 (1%)

Query: 100 IVHQDLFISHYQLLESLVQGSDGVVLDEELLK-EDLKGMVEFSWRLGLSVFVETHKQD 156
           I+ +D +I   Q+  +   G+D +++   +L  E +K + E +  LG+   VE H ++
Sbjct: 95  ILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSRE 152



>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
           Thermotoga Maritima
          Length = 225

 Score = 26.9 bits (58), Expect = 1.4
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 104 DLFISHYQLLESLVQGSDGVVLDEELLKEDLKGMVEFSWRLGLSVFVETHKQDYTHLKDL 163
           DL    YQ+LE LV   + VV  EEL         E  W     VF +  +    +L+  
Sbjct: 151 DLTKKEYQILEYLVXNKNRVVTKEEL--------QEHLWSFDDEVFSDVLRSHIKNLRKK 202

Query: 164 GVLGVLEKVPHS 175
              G  +K+ H+
Sbjct: 203 VDKGFKKKIIHT 214



>pdb|1LF1|A Chain A, Crystal Structure Of Cel5 From Alkalophilic Bacillus Sp
          Length = 308

 Score = 25.4 bits (54), Expect = 4.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 120 SDGVVLDEELLKEDLKGMVEFSWRLGLSVFVETH 153
           S G  +D+  +KE +K  VE +  LG+ V ++ H
Sbjct: 68  SSGGYIDDPSVKEKVKETVEAAIDLGIYVIIDWH 101



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.320    0.140    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,059,632
Number of Sequences: 13198
Number of extensions: 42683
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 5
length of query: 185
length of database: 2,899,336
effective HSP length: 83
effective length of query: 102
effective length of database: 1,803,902
effective search space: 183998004
effective search space used: 183998004
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)