BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644905|ref|NP_207075.1| ferredoxin [Helicobacter
pylori 26695]
(84 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BLU| Structure Of The 2[4fe-4s] Ferredoxin From Chro... 93 4e-21
pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) Ferredoxi... 60 5e-11
pdb|2FDN| 2[4fe-4s] Ferredoxin From Clostridium Acidi-Uri... 58 2e-10
pdb|1FCA| Ferredoxin 57 4e-10
pdb|1CLF| Clostridium Pasteurianum Ferredoxin 56 6e-10
pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c V... 49 1e-07
pdb|1FXD| Ferredoxin Ii >gi|6137634|pdb|1F2G| The Nmr So... 46 6e-07
pdb|1BC6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, ... 45 1e-06
pdb|1BD6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, ... 45 1e-06
pdb|1G3O|A Chain A, Crystal Structure Of V19e Mutant Of Fer... 43 5e-06
pdb|1FRK| Ferredoxin (Fdi) Mutant With His 35 Replaced By... 43 5e-06
pdb|1G6B|A Chain A, Crystal Structure Of P47s Mutant Of Fer... 42 9e-06
pdb|1FRJ| Ferredoxin (Fdi) Mutant With Phe 25 Replaced By... 42 1e-05
pdb|2FD2| Ferredoxin (Mutant With Cys 24 Replaced By Ala)... 42 1e-05
pdb|1H98|A Chain A, New Insights Into Thermostability Of Ba... 42 2e-05
pdb|1FRM| Ferredoxin (Fdi) Mutant With Glu 46 Replaced By... 41 2e-05
pdb|1FTC|A Chain A, Y13c Mutant Of Azotobacter Vinelandii F... 41 2e-05
pdb|1B0V|A Chain A, I40n Mutant Of Azotobacter Vinelandii F... 41 3e-05
pdb|1B0T|A Chain A, D15kK84D MUTANT OF AZOTOBACTER VINELAND... 41 3e-05
pdb|1A6L| T14c Mutant Of Azotobacter Vinelandii Fdi 41 3e-05
pdb|1D3W|A Chain A, Crystal Structure Of Ferredoxin 1 D15e ... 41 3e-05
pdb|1GAO|A Chain A, Crystal Structure Of The L44s Mutant Of... 41 3e-05
pdb|7FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinela... 40 3e-05
pdb|1FDD| Ferredoxin Mutant With Asp 15 Replaced By Asn (... 40 3e-05
pdb|1FRL| Ferredoxin (Fdi) Mutant With Glu 38 Replaced By... 40 4e-05
pdb|1F5B|A Chain A, Crystal Structure Of F2h Ferredoxin 1 M... 40 4e-05
pdb|1FRH| Ferredoxin (Fdi) Mutant With Phe 2 Replaced By ... 40 4e-05
pdb|1FRI| Ferredoxin (Fdi) Mutant With Asp 23 Replaced By... 40 6e-05
pdb|1FF2|A Chain A, Crystal Structure Of The C42d Mutant Of... 39 8e-05
pdb|1F5C|A Chain A, Crystal Structure Of F25h Ferredoxin 1 ... 39 8e-05
pdb|1FD2| Ferredoxin (Mutant With Cys 20 Replaced By Ala)... 37 4e-04
pdb|1JNR|B Chain B, Structure Of Adenylylsulfate Reductase ... 37 5e-04
pdb|1FRX| Ferredoxin (Fdi) Mutant With Cys 20 Replaced By... 37 5e-04
pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-On... 36 8e-04
pdb|1KQF|B Chain B, Formate Dehydrogenase N From E. Coli >g... 31 0.021
pdb|1JB0|C Chain C, Crystal Structure Of Photosystem I: A P... 31 0.027
pdb|1K0T|A Chain A, Nmr Solution Structure Of Unbound, Oxid... 31 0.027
pdb|1M6B|A Chain A, Structure Of The Her3 (Erbb3) Extracell... 28 0.13
pdb|1I8N|A Chain A, Crystal Structure Of Leech Anti-Platele... 27 0.39
pdb|1FXR|A Chain A, Ferredoxin I (4fe-4s) >gi|999891|pdb|1F... 27 0.51
pdb|1XER| Structure Of Ferredoxin 26 0.67
pdb|1LD7|B Chain B, Co-Crystal Structure Of Human Farnesylt... 26 0.67
pdb|1ROF| Nmr Study Of 4fe-4s Ferredoxin Of Thermotoga Ma... 25 1.9
pdb|1KWJ|A Chain A, Solution Structure Determination Of The... 25 1.9
pdb|1L3O|A Chain A, Solution Structure Determination Of The... 25 1.9
pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical I... 25 1.9
pdb|1LM2|A Chain A, Nmr Structural Characterization Of The ... 25 1.9
pdb|1HH5|A Chain A, Cytochrome C7 From Desulfuromonas Aceto... 25 1.9
pdb|1MDA|L Chain L, Methylamine Dehydrogenase (E.C.1.4.99.3... 24 3.3
pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain ... 24 3.3
pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoen... 24 3.3
pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-R... 24 3.3
pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus ... 24 3.3
pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase... 24 3.3
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna ... 24 3.3
pdb|1JI9|A Chain A, Solution Structure Of The Alpha-Domain ... 23 4.3
pdb|1KZO|B Chain B, Protein Farnesyltransferase Complexed W... 23 4.3
pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesy... 23 5.6
pdb|1AJB|A Chain A, Mol_id: 1; Molecule: Alkaline Phosphata... 23 5.6
pdb|1ANJ|A Chain A, Alkaline Phosphatase (K328h) >gi|131090... 23 5.6
pdb|1ANI|A Chain A, Alkaline Phosphatase (D153h, K328h) >gi... 23 5.6
pdb|1ALH|A Chain A, Alkaline Phosphatase (E.C.3.1.3.1) Muta... 23 5.6
pdb|2ANH|A Chain A, Alkaline Phosphatase (D153h) >gi|131073... 23 5.6
pdb|1ELX|A Chain A, E. Coli Alkaline Phosphatase Mutant (S1... 23 5.6
pdb|1URB|A Chain A, Alkaline Phosphatase (N51mg) >gi|163310... 23 5.6
pdb|1ELY|A Chain A, E. Coli Alkaline Phosphatase Mutant (S1... 23 5.6
pdb|1ELZ|A Chain A, E. Coli Alkaline Phosphatase Mutant (S1... 23 5.6
pdb|1ALI|A Chain A, Alkaline Phosphatase Mutant (H412n) >gi... 23 5.6
pdb|1HQA|A Chain A, Alkaline Phosphatase (H412q) >gi|142139... 23 5.6
pdb|1ED8|A Chain A, Structure Of E. Coli Alkaline Phosphata... 23 5.6
pdb|1AUN| Pathogenesis-Related Protein 5d From Nicotiana ... 23 5.6
pdb|1HJK|A Chain A, Alkaline Phosphatase Mutant H331q >gi|2... 23 5.6
pdb|1B8J|A Chain A, Alkaline Phosphatase Complexed With Van... 23 5.6
pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lys... 23 7.4
pdb|1JSM|A Chain A, Structure Of H5 Avian Haemagglutinin >g... 23 7.4
pdb|3PCG|A Chain A, Structure Of Protocatechuate 3,4-Dioxyg... 22 9.6
pdb|1IQZ|A Chain A, Oxidized [4fe-4s] Ferredoxin From Bacil... 22 9.6
>pdb|1BLU| Structure Of The 2[4fe-4s] Ferredoxin From Chromatium Vinosum
Length = 82
Score = 93.2 bits (230), Expect = 4e-21
Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 2 SLLVNDECIACDACREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDAIL 61
+L++ DECI CD C ECP+ AI +GD Y I+P CTEC G+ + +CV VCPVD I+
Sbjct: 1 ALMITDECINCDVCEPECPNGAISQGDETYVIEPSLCTECVGHYETS-QCVEVCPVDCII 59
Query: 62 PDPNNAESKEELKYKYESL 80
DP++ E+++EL+ KYE +
Sbjct: 60 KDPSHEETEDELRAKYERI 78
>pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) Ferredoxin From (Now)
Peptostreptococcus Asaccharolyticus
Length = 55
Score = 59.7 bits (143), Expect = 5e-11
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 4 LVNDECIACDACREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDAILPD 63
++ND CIAC AC+ ECP I+EG IY ID D C +C C SVCPV A P+
Sbjct: 3 VINDSCIACGACKPECPVNCIQEGS-IYAIDADSCIDC-------GSCASVCPVGAPNPE 54
>pdb|2FDN| 2[4fe-4s] Ferredoxin From Clostridium Acidi-Urici
pdb|1FDN| Ferredoxin
Length = 55
Score = 58.2 bits (139), Expect = 2e-10
Identities = 26/56 (46%), Positives = 31/56 (54%), Gaps = 7/56 (12%)
Query: 4 LVNDECIACDACREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
++N+ CI+C AC ECP AI GD Y ID D C +C C VCPVDA
Sbjct: 3 VINEACISCGACEPECPVNAISSGDDRYVIDADTCIDC-------GACAGVCPVDA 51
>pdb|1FCA| Ferredoxin
Length = 55
Score = 57.0 bits (136), Expect = 4e-10
Identities = 25/56 (44%), Positives = 32/56 (56%), Gaps = 7/56 (12%)
Query: 4 LVNDECIACDACREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
++N+ CI+C AC ECP +AI +G Y ID D C +C C VCPVDA
Sbjct: 3 VINEACISCGACEPECPVDAISQGGSRYVIDADTCIDC-------GACAGVCPVDA 51
>pdb|1CLF| Clostridium Pasteurianum Ferredoxin
Length = 55
Score = 56.2 bits (134), Expect = 6e-10
Identities = 24/55 (43%), Positives = 31/55 (55%), Gaps = 7/55 (12%)
Query: 5 VNDECIACDACREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ D C++C AC ECP AI +GD I+ ID D C +C C +VCPV A
Sbjct: 4 IADSCVSCGACASECPVNAISQGDSIFVIDADTCIDC-------GNCANVCPVGA 51
>pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of
Bacillus Schlegelii Fe7s8 Ferredoxin
pdb|1BWE|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of
Bacillus Schlegelii Fe7s8 Ferredoxin
Length = 77
Score = 48.5 bits (114), Expect = 1e-07
Identities = 24/59 (40%), Positives = 32/59 (53%), Gaps = 9/59 (15%)
Query: 4 LVNDECIA--CDACREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDAI 60
++ + CI C +C E CP + I EG+ Y IDPD C +C C +VCPV AI
Sbjct: 3 VITEPCIGTKCASCVEVCPVDCIHEGEDQYYIDPDVCIDC-------GACEAVCPVSAI 54
Score = 26.6 bits (57), Expect = 0.51
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 7 DECIACDACREECPSEAIEEGD 28
D CI C AC CP AI D
Sbjct: 37 DVCIDCGACEAVCPVSAIYHED 58
>pdb|1FXD| Ferredoxin Ii
pdb|1F2G| The Nmr Solution Structure Of The 3fe Ferredoxin Ii From
Desulfovibrio Gigas, 15 Structures
Length = 58
Score = 46.2 bits (108), Expect = 6e-07
Identities = 24/59 (40%), Positives = 32/59 (53%), Gaps = 8/59 (13%)
Query: 5 VNDECIACDACREECPS--EAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDAIL 61
VND+C+AC+AC E CP E EEGD I+PD +C + CP +AI+
Sbjct: 4 VNDDCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDCV------EEAIDSCPAEAIV 56
>pdb|1BC6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, 20 Structures
Length = 77
Score = 45.1 bits (105), Expect = 1e-06
Identities = 23/59 (38%), Positives = 31/59 (51%), Gaps = 9/59 (15%)
Query: 4 LVNDECIACD--ACREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDAI 60
++ + CI +C E CP + I EG+ Y IDPD C +C C +VCPV AI
Sbjct: 3 VITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDC-------GACEAVCPVSAI 54
Score = 26.6 bits (57), Expect = 0.51
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 7 DECIACDACREECPSEAIEEGD 28
D CI C AC CP AI D
Sbjct: 37 DVCIDCGACEAVCPVSAIYHED 58
>pdb|1BD6| 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, Minimized Average
Structure
Length = 77
Score = 45.1 bits (105), Expect = 1e-06
Identities = 23/59 (38%), Positives = 31/59 (51%), Gaps = 9/59 (15%)
Query: 4 LVNDECIACD--ACREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDAI 60
++ + CI +C E CP + I EG+ Y IDPD C +C C +VCPV AI
Sbjct: 3 VITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDC-------GACEAVCPVSAI 54
Score = 26.6 bits (57), Expect = 0.51
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 7 DECIACDACREECPSEAIEEGD 28
D CI C AC CP AI D
Sbjct: 37 DVCIDCGACEAVCPVSAIYHED 58
>pdb|1G3O|A Chain A, Crystal Structure Of V19e Mutant Of Ferredoxin I
Length = 106
Score = 43.1 bits (100), Expect = 5e-06
Identities = 24/73 (32%), Positives = 30/73 (40%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C EECP + EG I PD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKYTDCVEECPVDCFYEGPNFLVIHPDECIDC-------ALCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1FRK| Ferredoxin (Fdi) Mutant With His 35 Replaced By Asp (H35d)
Length = 106
Score = 43.1 bits (100), Expect = 5e-06
Identities = 24/73 (32%), Positives = 30/73 (40%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E CP + EG IDPD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDC-------ALCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1G6B|A Chain A, Crystal Structure Of P47s Mutant Of Ferredoxin I
Length = 106
Score = 42.4 bits (98), Expect = 9e-06
Identities = 24/73 (32%), Positives = 30/73 (40%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E CP + EG I PD C +C C S CP A
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDC-------ALCESECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1FRJ| Ferredoxin (Fdi) Mutant With Phe 25 Replaced By Ile (F25i)
Length = 106
Score = 42.0 bits (97), Expect = 1e-05
Identities = 24/73 (32%), Positives = 30/73 (40%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E CP + I EG I PD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCIYEGPNFLVIHPDECIDC-------ALCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|2FD2| Ferredoxin (Mutant With Cys 24 Replaced By Ala) (C24A)
Length = 106
Score = 42.0 bits (97), Expect = 1e-05
Identities = 24/73 (32%), Positives = 30/73 (40%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E CP +A EG I PD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDAFYEGPNFLVIHPDECIDC-------ALCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1H98|A Chain A, New Insights Into Thermostability Of Bacterial
Ferredoxins: High Resolution Crystal Structure Of The
Seven-Iron Ferredoxin From Thermus Thermophilus
Length = 78
Score = 41.6 bits (96), Expect = 2e-05
Identities = 22/67 (32%), Positives = 33/67 (48%), Gaps = 9/67 (13%)
Query: 4 LVNDECIAC--DACREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDAIL 61
++ + CI +C E CP E I +G + I P+ C +C CV CPV+AI
Sbjct: 3 VICEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPEECIDC-------GACVPACPVNAIY 55
Query: 62 PDPNNAE 68
P+ + E
Sbjct: 56 PEEDVPE 62
>pdb|1FRM| Ferredoxin (Fdi) Mutant With Glu 46 Replaced By Ala (E46a)
Length = 106
Score = 41.2 bits (95), Expect = 2e-05
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E CP + EG I PD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDC-------ALCAPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1FTC|A Chain A, Y13c Mutant Of Azotobacter Vinelandii Fdi
pdb|1FTC|B Chain B, Y13c Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 41.2 bits (95), Expect = 2e-05
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E CP + EG I PD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKXTDCVEVCPVDCFYEGPNFLVIHPDECIDC-------ALCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1B0V|A Chain A, I40n Mutant Of Azotobacter Vinelandii Fdi
pdb|1B0V|B Chain B, I40n Mutant Of Azotobacter Vinelandii Fdi
pdb|1B0V|C Chain C, I40n Mutant Of Azotobacter Vinelandii Fdi
pdb|1B0V|D Chain D, I40n Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 40.8 bits (94), Expect = 3e-05
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E CP + EG I PD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECNDC-------ALCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1B0T|A Chain A, D15kK84D MUTANT OF AZOTOBACTER VINELANDII FDI
Length = 106
Score = 40.8 bits (94), Expect = 3e-05
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACD--ACREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E CP + EG I PD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKYTKCVEVCPVDCFYEGPNFLVIHPDECIDC-------ALCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1A6L| T14c Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 40.8 bits (94), Expect = 3e-05
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDACR--EECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E CP + EG I PD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKYCDCVEVCPVDCFYEGPNFLVIHPDECIDC-------ALCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1D3W|A Chain A, Crystal Structure Of Ferredoxin 1 D15e Mutant From
Azotobacter Vinelandii At 1.7 Angstrom Resolution
Length = 106
Score = 40.8 bits (94), Expect = 3e-05
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACD--ACREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E CP + EG I PD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKYTECVEVCPVDCFYEGPNFLVIHPDECIDC-------ALCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1GAO|A Chain A, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|B Chain B, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|C Chain C, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|D Chain D, Crystal Structure Of The L44s Mutant Of Ferredoxin I
Length = 106
Score = 40.8 bits (94), Expect = 3e-05
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E CP + EG I PD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDC-------ASCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|7FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At Ph 8.5,
100 K, 1.35 A
pdb|6FD1| 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature,
1.35 A
pdb|6FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At 100k, Na
Dithionite Reduced At Ph 8.5, Resolution 1.4 A
pdb|7FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii, Na
Dithionite Reduced, Ph 8.5, 1.4a Resolution, 100 K
pdb|5FD1| Ferredoxin (Oxidized) At Ph 8
pdb|1AXQ| Ferricyanide Oxidized Fdi
pdb|1FDA| Ferredoxin (Oxidized) At Ph 6
pdb|1FDB| Ferredoxin (Reduced) At Ph 6
pdb|1FER| Ferredoxin I (Ph 6.5)
Length = 106
Score = 40.4 bits (93), Expect = 3e-05
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E CP + EG I PD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDC-------ALCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1FDD| Ferredoxin Mutant With Asp 15 Replaced By Asn (D15n)
Length = 106
Score = 40.4 bits (93), Expect = 3e-05
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E CP + EG I PD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKYTNCVEVCPVDCFYEGPNFLVIHPDECIDC-------ALCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1FRL| Ferredoxin (Fdi) Mutant With Glu 38 Replaced By Ser (E38s)
Length = 106
Score = 40.0 bits (92), Expect = 4e-05
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E CP + EG I PD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDSCIDC-------ALCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1F5B|A Chain A, Crystal Structure Of F2h Ferredoxin 1 Mutant From
Azotobacter Vinelandii At 1.75 Angstrom Resolution
Length = 106
Score = 40.0 bits (92), Expect = 4e-05
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 4 LVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDAIL 61
+V D CI C C E CP + EG I PD C +C C CP AI
Sbjct: 3 VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDC-------ALCEPECPAQAIF 55
Query: 62 PDPNNAESKEE 72
+ E +E
Sbjct: 56 SEDEVPEDMQE 66
>pdb|1FRH| Ferredoxin (Fdi) Mutant With Phe 2 Replaced By Tyr (F2y)
Length = 106
Score = 40.0 bits (92), Expect = 4e-05
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 4 LVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDAIL 61
+V D CI C C E CP + EG I PD C +C C CP AI
Sbjct: 3 VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDC-------ALCEPECPAQAIF 55
Query: 62 PDPNNAESKEE 72
+ E +E
Sbjct: 56 SEDEVPEDMQE 66
>pdb|1FRI| Ferredoxin (Fdi) Mutant With Asp 23 Replaced By Asn (D23n)
Length = 106
Score = 39.7 bits (91), Expect = 6e-05
Identities = 23/73 (31%), Positives = 28/73 (37%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E CP EG I PD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVNCFYEGPNFLVIHPDECIDC-------ALCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1FF2|A Chain A, Crystal Structure Of The C42d Mutant Of Azotobacter
Vinelandii 7fe Ferredoxin (Fdi)
Length = 106
Score = 39.3 bits (90), Expect = 8e-05
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E CP + EG I PD C D+ C CP A
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECI-------DDALCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1F5C|A Chain A, Crystal Structure Of F25h Ferredoxin 1 Mutant From
Azotobacter Vinelandii At 1.75 Angstrom Resolution
Length = 106
Score = 39.3 bits (90), Expect = 8e-05
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E CP + EG I PD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCHYEGPNFLVIHPDECIDC-------ALCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1FD2| Ferredoxin (Mutant With Cys 20 Replaced By Ala) (C20A)
Length = 106
Score = 37.0 bits (84), Expect = 4e-04
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E P + EG I PD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKYTDCVEVAPVDCFYEGPNFLVIHPDECIDC-------ALCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1JNR|B Chain B, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNR|D Chain D, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|B Chain B, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|D Chain D, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
Length = 150
Score = 36.6 bits (83), Expect = 5e-04
Identities = 22/59 (37%), Positives = 29/59 (48%), Gaps = 12/59 (20%)
Query: 7 DECIACD--ACREECPSEAI---EEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDAI 60
D C A + AC CP++ + +E YN +PD C ECY CV +CP AI
Sbjct: 11 DGCKALERTACEYICPNDLMTLDKEKMKAYNREPDMCWECYS-------CVKMCPQGAI 62
>pdb|1FRX| Ferredoxin (Fdi) Mutant With Cys 20 Replaced By Ser (C20s)
Length = 106
Score = 36.6 bits (83), Expect = 5e-04
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 2 SLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDA 59
+ +V D CI C C E P + EG I PD C +C C CP A
Sbjct: 1 AFVVTDNCIKCKYTDCVEVSPVDCFYEGPNFLVIHPDECIDC-------ALCEPECPAQA 53
Query: 60 ILPDPNNAESKEE 72
I + E +E
Sbjct: 54 IFSEDEVPEDMQE 66
>pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase
From Desulfovibrio Desulfuricans
pdb|1HFE|M Chain M, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase
From Desulfovibrio Desulfuricans
Length = 421
Score = 35.8 bits (81), Expect = 8e-04
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
Query: 8 ECIACDACREECPSEAI--EEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDAI 60
+CI CD C + CP+ AI E G+P + C C +C++ CP +AI
Sbjct: 34 KCIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINC-------GQCLTHCPENAI 81
Score = 24.6 bits (52), Expect = 1.9
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 7 DECIACDACREECPSEAIEE 26
+ CI C C CP AI E
Sbjct: 64 EACINCGQCLTHCPENAIYE 83
>pdb|1KQF|B Chain B, Formate Dehydrogenase N From E. Coli
pdb|1KQG|B Chain B, Formate Dehydrogenase N From E. Coli
Length = 294
Score = 31.2 bits (69), Expect = 0.021
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 6 NDECIACDACREECP---SEAIEEGDPIYNIDPDRCTECYGYDD--DEPRCVSVCPVDAI 60
++ CI C C CP +E + +Y +CT C EP CV CP AI
Sbjct: 130 SENCIGCGYCIAGCPFNIPRLNKEDNRVY-----KCTLCVDRVSVGQEPACVKTCPTGAI 184
>pdb|1JB0|C Chain C, Crystal Structure Of Photosystem I: A Photosynthetic
Reaction Center And Core Antenna System From
Cyanobacteria
Length = 80
Score = 30.8 bits (68), Expect = 0.027
Identities = 18/59 (30%), Positives = 25/59 (41%), Gaps = 9/59 (15%)
Query: 5 VNDECIACDACREECPSEAIE----EGDPIYNI-DPDRCTECYGYDDDEPRCVSVCPVD 58
+ D CI C C CP++ +E +G I R +C G RC + CP D
Sbjct: 6 IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGC----KRCETACPTD 60
>pdb|1K0T|A Chain A, Nmr Solution Structure Of Unbound, Oxidized Photosystem
I Subunit Psac, Containing [4fe-4s] Clusters Fa And Fb
Length = 80
Score = 30.8 bits (68), Expect = 0.027
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 2 SLLVNDECIACDACREECPSEAIE----EGDPIYNI-DPDRCTECYGYDDDEPRCVSVCP 56
S+ + D CI C C CP + +E +G I R +C G RC + CP
Sbjct: 3 SVKIYDTCIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGC----KRCETACP 58
Query: 57 VD 58
D
Sbjct: 59 TD 60
>pdb|1M6B|A Chain A, Structure Of The Her3 (Erbb3) Extracellular Domain
pdb|1M6B|B Chain B, Structure Of The Her3 (Erbb3) Extracellular Domain
Length = 621
Score = 28.5 bits (62), Expect = 0.13
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 12 CDACREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCP 56
C +C EC + +E D C +C + D P CVS CP
Sbjct: 530 CFSCHPEC--QPMEGTATCNGSGSDTCAQCAHFRDG-PHCVSSCP 571
Score = 23.5 bits (49), Expect = 4.3
Identities = 18/81 (22%), Positives = 30/81 (36%), Gaps = 18/81 (22%)
Query: 8 ECIAC------DACREECPSEAIEEGDPIYNIDPDRCTEC-----------YGYDDDEPR 50
+C AC AC CP + + ++P+ T+ + + D+
Sbjct: 223 DCFACRHFNDSGACVPRCPQPLVYN-KLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTS 281
Query: 51 CVSVCPVDAILPDPNNAESKE 71
CV CP D + D N + E
Sbjct: 282 CVRACPPDKMEVDKNGLKMCE 302
>pdb|1I8N|A Chain A, Crystal Structure Of Leech Anti-Platelet Protein
pdb|1I8N|B Chain B, Crystal Structure Of Leech Anti-Platelet Protein
pdb|1I8N|C Chain C, Crystal Structure Of Leech Anti-Platelet Protein
Length = 126
Score = 26.9 bits (58), Expect = 0.39
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 2 SLLVNDECIACDACREECPSEAIEEGDPIYNIDPDRCTECY 42
+LL E + D CR+ C A+E I I+ + ECY
Sbjct: 58 NLLTKTEFTSVDECRKMCEESAVEPSCYILQINTE-TNECY 97
>pdb|1FXR|A Chain A, Ferredoxin I (4fe-4s)
pdb|1FXR|B Chain B, Ferredoxin I (4fe-4s)
pdb|1DAX| Oxidised Desulfovibrio Africanus Ferredoxin I, Nmr, Minimized
Average Structure
pdb|1DFD| Oxidised Desulfovibrio Africanus Ferredoxin I, Nmr, 19
Structures
Length = 64
Score = 26.6 bits (57), Expect = 0.51
Identities = 18/55 (32%), Positives = 24/55 (42%), Gaps = 5/55 (9%)
Query: 7 DECIACDACREECPSEAIEEGDPIYNIDPDRCTECYGYDDDE-PRCVSVCPVDAI 60
DECIAC++C E P DP I+ + G +E + CPV I
Sbjct: 9 DECIACESCVEIAPGAFAM--DP--EIEKAYVKDVEGASQEEVEEAMDTCPVQCI 59
>pdb|1XER| Structure Of Ferredoxin
Length = 103
Score = 26.2 bits (56), Expect = 0.67
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 22/66 (33%)
Query: 7 DECIACDACREECPSEAIE------------EGDPIYNIDPDRCTECYGYDDDEPRCVSV 54
D CIA +C CP + + DP+ + C C CV+V
Sbjct: 43 DLCIADGSCINACPVNVFQWYDTPGHPASEKKADPV---NEQACIFCMA-------CVNV 92
Query: 55 CPVDAI 60
CPV AI
Sbjct: 93 CPVAAI 98
Score = 24.6 bits (52), Expect = 1.9
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 5 VNDE-CIACDACREECPSEAIEEGDP 29
VN++ CI C AC CP AI+ P
Sbjct: 78 VNEQACIFCMACVNVCPVAAIDVKPP 103
>pdb|1LD7|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
Length = 437
Score = 26.2 bits (56), Expect = 0.67
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 20 PSEAIEEGDPIYNIDPDRCTECYGYDDDEP 49
P A++ P+YNI PD+ + Y +P
Sbjct: 390 PENALQPTHPVYNIGPDKVIQATTYFLQKP 419
>pdb|1ROF| Nmr Study Of 4fe-4s Ferredoxin Of Thermotoga Maritima
pdb|1VJW| Structure Of Oxidoreductase (Nadp+(A),Ferredoxin(A))
Length = 60
Score = 24.6 bits (52), Expect = 1.9
Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 13/66 (19%)
Query: 7 DECIACDACREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDAILPDPNN 66
D CI C C CP ++ + D + + D P C DA P
Sbjct: 8 DACIGCGVCENLCPD--------VFQLGDDGKAKVLQPETDLP-----CAKDAADSCPTG 54
Query: 67 AESKEE 72
A S EE
Sbjct: 55 AISVEE 60
>pdb|1KWJ|A Chain A, Solution Structure Determination Of The Fully Oxidized
Double Mutant K9-10a Cytochrome C7 From Desulfuromonas
Acetoxidans, Minimized Average Structure
Length = 68
Score = 24.6 bits (52), Expect = 1.9
Identities = 13/45 (28%), Positives = 23/45 (50%), Gaps = 5/45 (11%)
Query: 8 ECIACDACREECPSE-AIEEGDPIYNIDPDRCTECYGYDDDEPRC 51
E + CDAC E P++ AI++ + D C C+ ++ +C
Sbjct: 22 EKLGCDACHEGTPAKIAIDK----KSAHKDACKTCHKSNNGPTKC 62
>pdb|1L3O|A Chain A, Solution Structure Determination Of The Fully Oxidized
Double Mutant K9-10a Cytochrome C7 From Desulfuromonas
Acetoxidans, Ensemble Of 35 Structures
Length = 68
Score = 24.6 bits (52), Expect = 1.9
Identities = 13/45 (28%), Positives = 23/45 (50%), Gaps = 5/45 (11%)
Query: 8 ECIACDACREECPSE-AIEEGDPIYNIDPDRCTECYGYDDDEPRC 51
E + CDAC E P++ AI++ + D C C+ ++ +C
Sbjct: 22 EKLGCDACHEGTPAKIAIDK----KSAHKDACKTCHKSNNGPTKC 62
>pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between Pyruvate-
Ferredoxin Oxidoreductase From Desulfovibrio Africanus
And Pyruvate.
pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between Pyruvate-
Ferredoxin Oxidoreductase From Desulfovibrio Africanus
And Pyruvate
Length = 1231
Score = 24.6 bits (52), Expect = 1.9
Identities = 11/28 (39%), Positives = 14/28 (49%), Gaps = 7/28 (25%)
Query: 35 PDRCTECYGYDDDEPRCVSVCPVDAILP 62
P+ C +C +C VCP AILP
Sbjct: 685 PENCIQCN-------QCAFVCPHSAILP 705
Score = 24.3 bits (51), Expect = 2.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 5 VNDECIACDACREECPSEAI 24
V + CI C+ C CP AI
Sbjct: 684 VPENCIQCNQCAFVCPHSAI 703
>pdb|1LM2|A Chain A, Nmr Structural Characterization Of The Reduction Of
Chromium(Vi) To Chromium(Iii) By Cytochrome C7
pdb|1EHJ|A Chain A, A Proton-Nmr Investigation Of The Fully Reduced
Cytochrome C7 From Desulfuromonas Acetoxidans
pdb|1NEW| Cytochrome C551.5, Nmr, Structures 1 - 18 Of 35
pdb|2NEW| Cytochrome C551.5, Nmr, Structures 19 - 35 Of 35
Length = 68
Score = 24.6 bits (52), Expect = 1.9
Identities = 13/45 (28%), Positives = 23/45 (50%), Gaps = 5/45 (11%)
Query: 8 ECIACDACREECPSE-AIEEGDPIYNIDPDRCTECYGYDDDEPRC 51
E + CDAC E P++ AI++ + D C C+ ++ +C
Sbjct: 22 EKLGCDACHEGTPAKIAIDK----KSAHKDACKTCHKSNNGPTKC 62
>pdb|1HH5|A Chain A, Cytochrome C7 From Desulfuromonas Acetoxidans
pdb|1F22|A Chain A, A Proton-Nmr Investigation Of The Fully Reduced
Cytochrome C7 From Desulfuromonas Acetoxidans.
Comparison Between The Reduced And The Oxidized Forms
Length = 68
Score = 24.6 bits (52), Expect = 1.9
Identities = 13/45 (28%), Positives = 23/45 (50%), Gaps = 5/45 (11%)
Query: 8 ECIACDACREECPSE-AIEEGDPIYNIDPDRCTECYGYDDDEPRC 51
E + CDAC E P++ AI++ + D C C+ ++ +C
Sbjct: 22 EKLGCDACHEGTPAKIAIDK----KSAHKDACKTCHKSNNGPTKC 62
>pdb|1MDA|L Chain L, Methylamine Dehydrogenase (E.C.1.4.99.3) Complex With
Amicyanin
pdb|1MDA|M Chain M, Methylamine Dehydrogenase (E.C.1.4.99.3) Complex With
Amicyanin
Length = 121
Score = 23.9 bits (50), Expect = 3.3
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 26 EGD-PIYNIDPDRCTECYGYDDDEPRCVSVCPV 57
EG+ P+YN D + C+G +D S+ PV
Sbjct: 86 EGELPVYNKDANDIIWCFGGEDGMTYHCSISPV 118
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
Length = 302
Score = 23.9 bits (50), Expect = 3.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 8 ECIACDACREECPSEAIEEG 27
EC AC ++CP+ +E G
Sbjct: 111 ECHQGCACSKDCPNRVVERG 130
>pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|M Chain M, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|D Chain D, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 1524
Score = 23.9 bits (50), Expect = 3.3
Identities = 9/17 (52%), Positives = 11/17 (63%)
Query: 38 CTECYGYDDDEPRCVSV 54
C +CYGYD R VS+
Sbjct: 1201 CQKCYGYDLSMARPVSI 1217
>pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 1264
Score = 23.9 bits (50), Expect = 3.3
Identities = 9/17 (52%), Positives = 11/17 (63%)
Query: 38 CTECYGYDDDEPRCVSV 54
C +CYGYD R VS+
Sbjct: 941 CQKCYGYDLSMARPVSI 957
>pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
Length = 1265
Score = 23.9 bits (50), Expect = 3.3
Identities = 9/17 (52%), Positives = 11/17 (63%)
Query: 38 CTECYGYDDDEPRCVSV 54
C +CYGYD R VS+
Sbjct: 942 CQKCYGYDLSMARPVSI 958
>pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|N Chain N, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1524
Score = 23.9 bits (50), Expect = 3.3
Identities = 9/17 (52%), Positives = 11/17 (63%)
Query: 38 CTECYGYDDDEPRCVSV 54
C +CYGYD R VS+
Sbjct: 1201 CQKCYGYDLSMARPVSI 1217
>pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 23.9 bits (50), Expect = 3.3
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 23 AIEEGD-PIYNIDPDRCTECYGYDDD 47
A E GD I + D ++C C+ Y +D
Sbjct: 870 AYEHGDIVIEHADGEKCERCWNYSED 895
>pdb|1JI9|A Chain A, Solution Structure Of The Alpha-Domain Of Mouse
Metallothionein-3
Length = 37
Score = 23.5 bits (49), Expect = 4.3
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 9 CIACDACREECPSEAIEEGDPIYNIDPDRCTEC 41
C C A E+C + + +G+ + ++C+ C
Sbjct: 4 CSCCPAGCEKCAKDCVCKGEEGAKAEAEKCSCC 36
>pdb|1KZO|B Chain B, Protein Farnesyltransferase Complexed With Farnesylated K-
Ras4b Peptide Product And Farnesyl Diphosphate Substrate
Bound Simultaneously
pdb|1KZP|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
K- Ras4b Peptide Product
pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1D8D|B Chain B, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1JCR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1D8E|B Chain B, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1QBQ|B Chain B, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid.
pdb|1FPP|B Chain B, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
Length = 437
Score = 23.5 bits (49), Expect = 4.3
Identities = 12/45 (26%), Positives = 20/45 (43%)
Query: 20 PSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDAILPDP 64
P ++ P+YNI PD+ + + +P DA+ DP
Sbjct: 390 PENVLQPTHPVYNIGPDKVIQATTHFLQKPVPGFEECEDAVTSDP 434
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
Length = 401
Score = 23.1 bits (48), Expect = 5.6
Identities = 7/18 (38%), Positives = 11/18 (60%)
Query: 20 PSEAIEEGDPIYNIDPDR 37
P ++ P+YNI PD+
Sbjct: 369 PENVLQPTHPVYNIGPDK 386
>pdb|1AJB|A Chain A, Mol_id: 1; Molecule: Alkaline Phosphatase; Chain: A, B;
Ec: 3.1.3.1; Engineered: Yes; Mutation: D153g;
Heterogen: Zinc Ion; Heterogen: Magnesium Ion;
Other_details: Mutant With 4-Fold Increased Activity And
Weaker Mg Binding
pdb|1AJB|B Chain B, Mol_id: 1; Molecule: Alkaline Phosphatase; Chain: A, B;
Ec: 3.1.3.1; Engineered: Yes; Mutation: D153g;
Heterogen: Zinc Ion; Heterogen: Magnesium Ion;
Other_details: Mutant With 4-Fold Increased Activity And
Weaker Mg Binding
pdb|1AJC|B Chain B, Mol_id: 1; Molecule: Alkaline Phosphatase; Chain: A, B;
Ec: 3.1.3.1; Engineered: Yes; Mutation: D153g;
Heterogen: Zn; Heterogen: Mg; Other_details: Mutant With
4-Fold Increased Activity And Weaker Mg Binding
pdb|1AJD|A Chain A, Mol_id: 1; Molecule: Alkaline Phosphatase Intermediate Ii
Of Holo Enzyme; Chain: A, B; Ec: 3.1.3.1; Engineered:
Yes; Mutation: D153g; Heterogen: Zn; Heterogen: Mg;
Other_details: Mutant With 4-Fold Increased Activity And
Weaker Mg Binding, Structure Solved After Resoaking
Metal Ions For Two Months Into The Apo Crystals
pdb|1AJD|B Chain B, Mol_id: 1; Molecule: Alkaline Phosphatase Intermediate Ii
Of Holo Enzyme; Chain: A, B; Ec: 3.1.3.1; Engineered:
Yes; Mutation: D153g; Heterogen: Zn; Heterogen: Mg;
Other_details: Mutant With 4-Fold Increased Activity And
Weaker Mg Binding, Structure Solved After Resoaking
Metal Ions For Two Months Into The Apo Crystals
pdb|1AJC|A Chain A, Mol_id: 1; Molecule: Alkaline Phosphatase; Chain: A, B;
Ec: 3.1.3.1; Engineered: Yes; Mutation: D153g;
Heterogen: Zn; Heterogen: Mg; Other_details: Mutant With
4-Fold Increased Activity And Weaker Mg Binding
pdb|1AJA|A Chain A, Mol_id: 1; Molecule: Alkaline Phosphatase; Chain: A, B;
Ec: 3.1.3.1; Engineered: Yes; Mutation: D153g;
Other_details: Apo Enzyme
pdb|1AJA|B Chain B, Mol_id: 1; Molecule: Alkaline Phosphatase; Chain: A, B;
Ec: 3.1.3.1; Engineered: Yes; Mutation: D153g;
Other_details: Apo Enzyme
Length = 449
Score = 23.1 bits (48), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 8 ECIACDACREECPSEAIEEG 27
+C A E+CP A+E+G
Sbjct: 167 KCYGPSATSEKCPGNALEKG 186
>pdb|1ANJ|A Chain A, Alkaline Phosphatase (K328h)
pdb|1ANJ|B Chain B, Alkaline Phosphatase (K328h)
Length = 446
Score = 23.1 bits (48), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 8 ECIACDACREECPSEAIEEG 27
+C A E+CP A+E+G
Sbjct: 164 KCYGPSATSEKCPGNALEKG 183
>pdb|1ANI|A Chain A, Alkaline Phosphatase (D153h, K328h)
pdb|1ANI|B Chain B, Alkaline Phosphatase (D153h, K328h)
Length = 446
Score = 23.1 bits (48), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 8 ECIACDACREECPSEAIEEG 27
+C A E+CP A+E+G
Sbjct: 164 KCYGPSATSEKCPGNALEKG 183
>pdb|1ALH|A Chain A, Alkaline Phosphatase (E.C.3.1.3.1) Mutant With Asp 369
Replaced By Asn (D369n)
pdb|1ALH|B Chain B, Alkaline Phosphatase (E.C.3.1.3.1) Mutant With Asp 369
Replaced By Asn (D369n)
Length = 446
Score = 23.1 bits (48), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 8 ECIACDACREECPSEAIEEG 27
+C A E+CP A+E+G
Sbjct: 164 KCYGPSATSEKCPGNALEKG 183
>pdb|2ANH|A Chain A, Alkaline Phosphatase (D153h)
pdb|2ANH|B Chain B, Alkaline Phosphatase (D153h)
Length = 446
Score = 23.1 bits (48), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 8 ECIACDACREECPSEAIEEG 27
+C A E+CP A+E+G
Sbjct: 164 KCYGPSATSEKCPGNALEKG 183
>pdb|1ELX|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102a)
pdb|1ELX|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102a)
Length = 449
Score = 23.1 bits (48), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 8 ECIACDACREECPSEAIEEG 27
+C A E+CP A+E+G
Sbjct: 167 KCYGPSATSEKCPGNALEKG 186
>pdb|1URB|A Chain A, Alkaline Phosphatase (N51mg)
pdb|1URB|B Chain B, Alkaline Phosphatase (N51mg)
pdb|1URA|A Chain A, Alkaline Phosphatase (D51zn)
pdb|1URA|B Chain B, Alkaline Phosphatase (D51zn)
Length = 446
Score = 23.1 bits (48), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 8 ECIACDACREECPSEAIEEG 27
+C A E+CP A+E+G
Sbjct: 164 KCYGPSATSEKCPGNALEKG 183
>pdb|1ELY|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102c)
pdb|1ELY|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102c)
Length = 449
Score = 23.1 bits (48), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 8 ECIACDACREECPSEAIEEG 27
+C A E+CP A+E+G
Sbjct: 167 KCYGPSATSEKCPGNALEKG 186
>pdb|1ELZ|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102g)
pdb|1ELZ|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102g)
Length = 449
Score = 23.1 bits (48), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 8 ECIACDACREECPSEAIEEG 27
+C A E+CP A+E+G
Sbjct: 167 KCYGPSATSEKCPGNALEKG 186
>pdb|1ALI|A Chain A, Alkaline Phosphatase Mutant (H412n)
pdb|1ALI|B Chain B, Alkaline Phosphatase Mutant (H412n)
pdb|1ALJ|A Chain A, Alkaline Phosphatase Mutant (H412n)
pdb|1ALJ|B Chain B, Alkaline Phosphatase Mutant (H412n)
Length = 449
Score = 23.1 bits (48), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 8 ECIACDACREECPSEAIEEG 27
+C A E+CP A+E+G
Sbjct: 167 KCYGPSATSEKCPGNALEKG 186
>pdb|1HQA|A Chain A, Alkaline Phosphatase (H412q)
pdb|1HQA|B Chain B, Alkaline Phosphatase (H412q)
Length = 449
Score = 23.1 bits (48), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 8 ECIACDACREECPSEAIEEG 27
+C A E+CP A+E+G
Sbjct: 167 KCYGPSATSEKCPGNALEKG 186
>pdb|1ED8|A Chain A, Structure Of E. Coli Alkaline Phosphatase Inhibited By The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED8|B Chain B, Structure Of E. Coli Alkaline Phosphatase Inhibited By The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED9|A Chain A, Structure Of E. Coli Alkaline Phosphatase Without The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED9|B Chain B, Structure Of E. Coli Alkaline Phosphatase Without The
Inorganic Phosphate At 1.75a Resolution
pdb|1EW9|A Chain A, Alkaline Phosphatase (E.C. 3.1.3.1) Complex With
Mercaptomethyl Phosphonate
pdb|1EW9|B Chain B, Alkaline Phosphatase (E.C. 3.1.3.1) Complex With
Mercaptomethyl Phosphonate
pdb|1EW8|A Chain A, Alkaline Phosphatase (E.C. 3.1.3.1) Complex With
Phosphonoacetic Acid
pdb|1EW8|B Chain B, Alkaline Phosphatase (E.C. 3.1.3.1) Complex With
Phosphonoacetic Acid
Length = 449
Score = 23.1 bits (48), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 8 ECIACDACREECPSEAIEEG 27
+C A E+CP A+E+G
Sbjct: 167 KCYGPSATSEKCPGNALEKG 186
>pdb|1AUN| Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 23.1 bits (48), Expect = 5.6
Identities = 7/19 (36%), Positives = 9/19 (46%)
Query: 37 RCTECYGYDDDEPRCVSVC 55
RC + Y Y D+P C
Sbjct: 175 RCPDAYSYPQDDPTSTFTC 193
>pdb|1HJK|A Chain A, Alkaline Phosphatase Mutant H331q
pdb|1HJK|B Chain B, Alkaline Phosphatase Mutant H331q
Length = 449
Score = 23.1 bits (48), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 8 ECIACDACREECPSEAIEEG 27
+C A E+CP A+E+G
Sbjct: 167 KCYGPSATSEKCPGNALEKG 186
>pdb|1B8J|A Chain A, Alkaline Phosphatase Complexed With Vanadate
pdb|1B8J|B Chain B, Alkaline Phosphatase Complexed With Vanadate
Length = 449
Score = 23.1 bits (48), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 8 ECIACDACREECPSEAIEEG 27
+C A E+CP A+E+G
Sbjct: 167 KCYGPSATSEKCPGNALEKG 186
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 22.7 bits (47), Expect = 7.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 8 ECIACDACREECPSEAIEEG 27
EC + +C ECP+ ++ G
Sbjct: 115 ECNSFCSCSMECPNRVVQRG 134
>pdb|1JSM|A Chain A, Structure Of H5 Avian Haemagglutinin
pdb|1JSN|A Chain A, Structure Of Avian H5 Haemagglutinin Complexed With Lsta
Receptro Analog
pdb|1JSO|A Chain A, Structure Of Avian H5 Haemagglutinin Bound To Lstc
Receptor Analog
Length = 325
Score = 22.7 bits (47), Expect = 7.4
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 15 CREEC--PSEAIEEGDPIYNIDPDRCTECYGY 44
C +C P AI P +NI P EC Y
Sbjct: 274 CNTKCQTPMGAINSSMPFHNIHPLTIGECPKY 305
>pdb|3PCG|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCC|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4-Hydroxybenzoate
pdb|3PCC|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4-Hydroxybenzoate
pdb|3PCC|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4-Hydroxybenzoate
pdb|3PCC|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4-Hydroxybenzoate
pdb|3PCC|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4-Hydroxybenzoate
pdb|3PCC|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4-Hydroxybenzoate
pdb|3PCH|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro-4-Hydroxybenzoate
pdb|3PCH|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro-4-Hydroxybenzoate
pdb|3PCH|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro-4-Hydroxybenzoate
pdb|3PCH|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro-4-Hydroxybenzoate
pdb|3PCH|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro-4-Hydroxybenzoate
pdb|3PCH|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro-4-Hydroxybenzoate
pdb|3PCE|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Hydroxyphenylacetate
pdb|3PCE|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Hydroxyphenylacetate
pdb|3PCE|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Hydroxyphenylacetate
pdb|3PCE|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Hydroxyphenylacetate
pdb|3PCE|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Hydroxyphenylacetate
pdb|3PCE|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Hydroxyphenylacetate
pdb|3PCD|A Chain A, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|B Chain B, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|C Chain C, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|D Chain D, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|E Chain E, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|F Chain F, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCJ|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2-Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2-Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2-Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2-Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2-Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2-Hydroxyisonicotinic Acid N-Oxide
pdb|3PCK|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6-Hydroxynicotinic Acid N-Oxide
pdb|3PCK|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6-Hydroxynicotinic Acid N-Oxide
pdb|3PCK|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6-Hydroxynicotinic Acid N-Oxide
pdb|3PCK|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6-Hydroxynicotinic Acid N-Oxide
pdb|3PCK|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6-Hydroxynicotinic Acid N-Oxide
pdb|3PCK|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6-Hydroxynicotinic Acid N-Oxide
pdb|3PCF|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4-Hydroxybenzoate
pdb|3PCF|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4-Hydroxybenzoate
pdb|3PCF|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4-Hydroxybenzoate
pdb|3PCF|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4-Hydroxybenzoate
pdb|3PCF|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4-Hydroxybenzoate
pdb|3PCF|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4-Hydroxybenzoate
pdb|3PCL|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2-Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2-Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2-Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2-Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2-Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2-Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|2PCD|A Chain A, Protocatechuate 3,4-Dioxygenase (E.C.1.13.11.3) (Ph 8.4,
20 Degrees C)
pdb|2PCD|B Chain B, Protocatechuate 3,4-Dioxygenase (E.C.1.13.11.3) (Ph 8.4,
20 Degrees C)
pdb|2PCD|C Chain C, Protocatechuate 3,4-Dioxygenase (E.C.1.13.11.3) (Ph 8.4,
20 Degrees C)
pdb|2PCD|D Chain D, Protocatechuate 3,4-Dioxygenase (E.C.1.13.11.3) (Ph 8.4,
20 Degrees C)
pdb|2PCD|E Chain E, Protocatechuate 3,4-Dioxygenase (E.C.1.13.11.3) (Ph 8.4,
20 Degrees C)
pdb|2PCD|F Chain F, Protocatechuate 3,4-Dioxygenase (E.C.1.13.11.3) (Ph 8.4,
20 Degrees C)
pdb|3PCB|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Hydroxybenzoate
pdb|3PCB|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Hydroxybenzoate
pdb|3PCB|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Hydroxybenzoate
pdb|3PCB|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Hydroxybenzoate
pdb|3PCB|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Hydroxybenzoate
pdb|3PCB|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Hydroxybenzoate
pdb|3PCA|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4-Dihydroxybenzoate
pdb|3PCA|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4-Dihydroxybenzoate
pdb|3PCA|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4-Dihydroxybenzoate
pdb|3PCA|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4-Dihydroxybenzoate
pdb|3PCA|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4-Dihydroxybenzoate
pdb|3PCA|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4-Dihydroxybenzoate
pdb|3PCI|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4-Hydroxybenzoate
pdb|3PCI|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4-Hydroxybenzoate
pdb|3PCI|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4-Hydroxybenzoate
pdb|3PCI|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4-Hydroxybenzoate
pdb|3PCI|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4-Hydroxybenzoate
pdb|3PCI|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4-Hydroxybenzoate
pdb|3PCM|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6-Hydroxynicotinic Acid N-Oxide And Cyanide
pdb|3PCM|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6-Hydroxynicotinic Acid N-Oxide And Cyanide
pdb|3PCM|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6-Hydroxynicotinic Acid N-Oxide And Cyanide
pdb|3PCM|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6-Hydroxynicotinic Acid N-Oxide And Cyanide
pdb|3PCM|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6-Hydroxynicotinic Acid N-Oxide And Cyanide
pdb|3PCM|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6-Hydroxynicotinic Acid N-Oxide And Cyanide
pdb|3PCN|A Chain A, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4-Dihydroxyphenylacetate
pdb|3PCN|B Chain B, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4-Dihydroxyphenylacetate
pdb|3PCN|C Chain C, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4-Dihydroxyphenylacetate
pdb|3PCN|D Chain D, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4-Dihydroxyphenylacetate
pdb|3PCN|E Chain E, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4-Dihydroxyphenylacetate
pdb|3PCN|F Chain F, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4-Dihydroxyphenylacetate
Length = 200
Score = 22.3 bits (46), Expect = 9.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 44 YDDDEPRCVSVCPVDAILPDPNNAES 69
Y DDE + + CPV ++ P E+
Sbjct: 144 YFDDEAQANAKCPVLNLIEQPQRRET 169
>pdb|1IQZ|A Chain A, Oxidized [4fe-4s] Ferredoxin From Bacillus
Thermoproteolyticus (Form I)
pdb|1IR0|A Chain A, Oxidized [4fe-4s] Ferredoxin From Bacillus
Thermoproteolyticus (Form Ii)
Length = 81
Score = 22.3 bits (46), Expect = 9.6
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 8/35 (22%)
Query: 2 SLLVNDECIACDACREECPSEAIEEGDPIYNIDPD 36
+++ + CIAC AC P IY+ D D
Sbjct: 4 TIVDKETCIACGACGAAAPD--------IYDYDED 30
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 582,094
Number of Sequences: 13198
Number of extensions: 23444
Number of successful extensions: 174
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 109
length of query: 84
length of database: 2,899,336
effective HSP length: 60
effective length of query: 24
effective length of database: 2,107,456
effective search space: 50578944
effective search space used: 50578944
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)