BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644908|ref|NP_207078.1| heat shock protein B (ibpB)
[Helicobacter pylori 26695]
(328 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 28 1.9
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant... 27 3.2
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli ... 27 3.2
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Betwee... 27 3.2
pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein... 26 5.4
pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotran... 26 5.4
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 27.7 bits (60), Expect = 1.9
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 241 TTIASILSRRYNIDIQPVFIDFNDDYSHYTATYYPSIRSQITDNAQN 287
+TIAS+++R Y+ID + +D D YT S+R+Q+ +QN
Sbjct: 383 STIASLITRFYDIDEGEILMD-GHDLREYTLA---SLRNQVALVSQN 425
>pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 26.9 bits (58), Expect = 3.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 159 AQYYENYGRGCLGRLTKFAPINHMIMSRREAFGVRFVNKIGAMK 202
A Y++ Y RG + LT+ NH+I + E+ + + + AM+
Sbjct: 353 APYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQ 396
>pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 26.9 bits (58), Expect = 3.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 159 AQYYENYGRGCLGRLTKFAPINHMIMSRREAFGVRFVNKIGAMK 202
A Y++ Y RG + LT+ NH+I + E+ + + + AM+
Sbjct: 353 APYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQ 396
>pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6- Bisphosphate.
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6- Bisphosphate.
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6- Bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6- Bisphosphate.
pdb|1GLB|G Chain G, Glycerol Kinase (E.C.2.7.1.30) Complex With Glycerol, Adp,
And The (Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc)
pdb|1GLA|G Chain G, Glycerol Kinase (E.C.2.7.1.30) Complex With Glycerol And
The (Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc)
pdb|1GLC|G Chain G, Glycerol Kinase (E.C.2.7.1.30) Complexed With The
(Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc), Glycerol-3-Phosphate, Adenosine Diphosphate,
Mg(Ii) And Zn(Ii)
pdb|1GLD|G Chain G, Glycerol Kinase (E.C.2.7.1.30) Complexed With The
(Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc), Glycerol-3-Phosphate, Adenosine Diphosphate
And Mn(Ii)
pdb|1GLE|G Chain G, Glycerol Kinase (E.C.2.7.1.30) Complexed With The
(Escherichia Coli) Glucose-Specific Factor Iii
(Iii-Glc), Glycerol-3-Phosphate, Adenosine Diphosphate
And Zn(Ii)
Length = 501
Score = 26.9 bits (58), Expect = 3.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 159 AQYYENYGRGCLGRLTKFAPINHMIMSRREAFGVRFVNKIGAMK 202
A Y++ Y RG + LT+ NH+I + E+ + + + AM+
Sbjct: 353 APYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQ 396
>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-Form
pdb|1GDE|B Chain B, Crystal Structure Of Pyrococcus Protein A-1 E-Form
pdb|1GD9|A Chain A, Crystall Structure Of Pyrococcus Protein-A1
pdb|1GD9|B Chain B, Crystall Structure Of Pyrococcus Protein-A1
Length = 389
Score = 26.2 bits (56), Expect = 5.4
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 22/108 (20%)
Query: 33 ESLVNILGFILAKMPHSWFLRCIKAVAWLMKTFDKCRYFDAKANLDFV-FGDSKSEEEKK 91
E + + GF W L + A +W+++ K + ++A + F+ + +K+ ++++
Sbjct: 223 ERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDER 282
Query: 92 RIIKKGYENFAFIILETIRVIFIPKDEYDARFTLINEENVWKSLNKEG 139
++ +E +R EYD R L VWK LN+ G
Sbjct: 283 ----------SWKAVEEMR------KEYDRRRKL-----VWKRLNEMG 309
>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
pdb|1DJU|B Chain B, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
Length = 388
Score = 26.2 bits (56), Expect = 5.4
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 22/108 (20%)
Query: 33 ESLVNILGFILAKMPHSWFLRCIKAVAWLMKTFDKCRYFDAKANLDFV-FGDSKSEEEKK 91
E + + GF W L + A +W+++ K + ++A + F+ + +K+ ++++
Sbjct: 222 ERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDER 281
Query: 92 RIIKKGYENFAFIILETIRVIFIPKDEYDARFTLINEENVWKSLNKEG 139
++ +E +R EYD R L VWK LN+ G
Sbjct: 282 ----------SWKAVEEMR------KEYDRRRKL-----VWKRLNEMG 308
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.325 0.140 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,949,764
Number of Sequences: 13198
Number of extensions: 78495
Number of successful extensions: 275
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 6
length of query: 328
length of database: 2,899,336
effective HSP length: 89
effective length of query: 239
effective length of database: 1,724,714
effective search space: 412206646
effective search space used: 412206646
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)