BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644909|ref|NP_207079.1| tRNA-guanine
transglycosylase (tgt) [Helicobacter pylori 26695]
(371 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K4G|A Chain A, Crystal Structure Of Trna-Guanine Trans... 325 4e-90
pdb|1EFZ|A Chain A, Mutagenesis And Crystallographic Studie... 324 9e-90
pdb|1WKD| Trna-Guanine Transglycosylase 322 3e-89
pdb|1WKE| Trna-Guanine Transglycosylase 322 3e-89
pdb|1WKF| Trna-Guanine Transglycosylase 322 4e-89
pdb|1IQ8|A Chain A, Crystal Structure Of Archaeosine Trna-G... 88 1e-18
pdb|1GKL|A Chain A, S954a Mutant Of The Feruloyl Esterase M... 28 2.2
pdb|1J53|A Chain A, Structure Of The N-Terminal Exonuclease... 27 2.8
pdb|1GKK|A Chain A, Feruloyl Esterase Domain Of Xyny From C... 27 4.8
pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogena... 26 6.3
pdb|1M10|A Chain A, Crystal Structure Of The Complex Of Gly... 26 8.3
pdb|1F2F|A Chain A, Src Sh2 Thref1trp Mutant >gi|9955318|pd... 26 8.3
>pdb|1K4G|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
Complexed With 2,6-Diamino-8-(1h-Imidazol-2-
Ylsulfanylmethyl)-3h-Quinazoline-4-One
pdb|1K4H|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
Complexed With 2,6-Diamino-8-Propylsulfanylmethyl-3h-
Quinazoline-4-One
pdb|1F3E|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
pdb|1PUD| Trna-Guanine Transglycosylase
pdb|1ENU|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
Length = 386
Score = 325 bits (834), Expect = 4e-90
Identities = 161/371 (43%), Positives = 229/371 (61%), Gaps = 4/371 (1%)
Query: 3 FQLQATDNNARAGLLNLAHSQVATPVFMPVGTQGCIKSLDATDAQEILGAKLILANTYHM 62
F + A + AR G + + + TP FMPVGT +K+L + GA +IL NTYH+
Sbjct: 16 FSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKP-ETVRATGADIILGNTYHL 74
Query: 63 YLRPGEKVVEELGGLHRFAQFYGSFLTDSGGFQAFSLSDNVKLQEDGIVFKSHIDGSKHL 122
LRPG + + +LGGLH F + LTDSGG+Q SLS K E+G+ FKSH+DGS+H+
Sbjct: 75 MLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDGSRHM 134
Query: 123 FTPAKVLDIQYSLNSDIMMVLDDLVGLPAPLKRLEESIKRSAKWANMSLEYHKEKNRPSN 182
+P + ++IQ+ L SDI+M D+ PA R S++RS +WA S + + +
Sbjct: 135 LSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRKEQAE 194
Query: 183 N--LFAIIQGGTHLKMRSLSV-GLTHEGFDGYAIGGLAVGESADEMLETIAHTAPLLPKD 239
N LF I QG +R S L GFDGYA+GGLAVGE DEM + + P+LP D
Sbjct: 195 NAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVPMLPDD 254
Query: 240 KPRYLMGVGTPENILDAISLGVDMFDCVMPTRNARNATLFTHSGKISIKNAPYKLDNTPI 299
KP YLMGVG P++I+ A+ G+DMFDCV+PTR+ RN FT G I+I+NA + D P+
Sbjct: 255 KPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKPL 314
Query: 300 EENCACYACKRYSKAYLHHLFRAKELTYARLASLHNLHFYLELVKNARNAILEKRFLSFK 359
+ C C C+++S+AY+HHL RA E+ A L + HN+ FY +L++ R++I E RF F
Sbjct: 315 DSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFA 374
Query: 360 KEFLEKYNSRS 370
++F +Y +R+
Sbjct: 375 QDFRARYFARN 385
>pdb|1EFZ|A Chain A, Mutagenesis And Crystallographic Studies Of Zymomonas
Mobilis Trna-Guanine Transglycosylase To Elucidate The
Role Of Serine 103 For Enzymatic Activity
Length = 386
Score = 324 bits (831), Expect = 9e-90
Identities = 160/371 (43%), Positives = 229/371 (61%), Gaps = 4/371 (1%)
Query: 3 FQLQATDNNARAGLLNLAHSQVATPVFMPVGTQGCIKSLDATDAQEILGAKLILANTYHM 62
F + A + AR G + + + TP FMPVGT +K+L + GA +IL NTYH+
Sbjct: 16 FSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKP-ETVRATGADIILGNTYHL 74
Query: 63 YLRPGEKVVEELGGLHRFAQFYGSFLTDSGGFQAFSLSDNVKLQEDGIVFKSHIDGSKHL 122
LRPG + + +LGGLH F + LTD+GG+Q SLS K E+G+ FKSH+DGS+H+
Sbjct: 75 MLRPGAERIAKLGGLHSFMGWDRPILTDAGGYQVMSLSSLTKQSEEGVTFKSHLDGSRHM 134
Query: 123 FTPAKVLDIQYSLNSDIMMVLDDLVGLPAPLKRLEESIKRSAKWANMSLEYHKEKNRPSN 182
+P + ++IQ+ L SDI+M D+ PA R S++RS +WA S + + +
Sbjct: 135 LSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRKEQAE 194
Query: 183 N--LFAIIQGGTHLKMRSLSV-GLTHEGFDGYAIGGLAVGESADEMLETIAHTAPLLPKD 239
N LF I QG +R S L GFDGYA+GGLAVGE DEM + + P+LP D
Sbjct: 195 NAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVPMLPDD 254
Query: 240 KPRYLMGVGTPENILDAISLGVDMFDCVMPTRNARNATLFTHSGKISIKNAPYKLDNTPI 299
KP YLMGVG P++I+ A+ G+DMFDCV+PTR+ RN FT G I+I+NA + D P+
Sbjct: 255 KPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKPL 314
Query: 300 EENCACYACKRYSKAYLHHLFRAKELTYARLASLHNLHFYLELVKNARNAILEKRFLSFK 359
+ C C C+++S+AY+HHL RA E+ A L + HN+ FY +L++ R++I E RF F
Sbjct: 315 DSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFA 374
Query: 360 KEFLEKYNSRS 370
++F +Y +R+
Sbjct: 375 QDFRARYFARN 385
>pdb|1WKD| Trna-Guanine Transglycosylase
Length = 386
Score = 322 bits (826), Expect = 3e-89
Identities = 160/371 (43%), Positives = 228/371 (61%), Gaps = 4/371 (1%)
Query: 3 FQLQATDNNARAGLLNLAHSQVATPVFMPVGTQGCIKSLDATDAQEILGAKLILANTYHM 62
F + A + AR G + + + TP FMPVGT +K+L + GA +IL NTYH+
Sbjct: 16 FSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKP-ETVRATGADIILGNTYHL 74
Query: 63 YLRPGEKVVEELGGLHRFAQFYGSFLTDSGGFQAFSLSDNVKLQEDGIVFKSHIDGSKHL 122
LRPG + + +LGGLH F + LT SGG+Q SLS K E+G+ FKSH+DGS+H+
Sbjct: 75 MLRPGAERIAKLGGLHSFMGWDRPILTASGGYQVMSLSSLTKQSEEGVTFKSHLDGSRHM 134
Query: 123 FTPAKVLDIQYSLNSDIMMVLDDLVGLPAPLKRLEESIKRSAKWANMSLEYHKEKNRPSN 182
+P + ++IQ+ L SDI+M D+ PA R S++RS +WA S + + +
Sbjct: 135 LSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRKEQAE 194
Query: 183 N--LFAIIQGGTHLKMRSLSV-GLTHEGFDGYAIGGLAVGESADEMLETIAHTAPLLPKD 239
N LF I QG +R S L GFDGYA+GGLAVGE DEM + + P+LP D
Sbjct: 195 NAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVPMLPDD 254
Query: 240 KPRYLMGVGTPENILDAISLGVDMFDCVMPTRNARNATLFTHSGKISIKNAPYKLDNTPI 299
KP YLMGVG P++I+ A+ G+DMFDCV+PTR+ RN FT G I+I+NA + D P+
Sbjct: 255 KPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKPL 314
Query: 300 EENCACYACKRYSKAYLHHLFRAKELTYARLASLHNLHFYLELVKNARNAILEKRFLSFK 359
+ C C C+++S+AY+HHL RA E+ A L + HN+ FY +L++ R++I E RF F
Sbjct: 315 DSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFA 374
Query: 360 KEFLEKYNSRS 370
++F +Y +R+
Sbjct: 375 QDFRARYFARN 385
>pdb|1WKE| Trna-Guanine Transglycosylase
Length = 386
Score = 322 bits (826), Expect = 3e-89
Identities = 160/371 (43%), Positives = 228/371 (61%), Gaps = 4/371 (1%)
Query: 3 FQLQATDNNARAGLLNLAHSQVATPVFMPVGTQGCIKSLDATDAQEILGAKLILANTYHM 62
F + A + AR G + + + TP FMPVGT +K+L + GA +IL NTYH+
Sbjct: 16 FSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKP-ETVRATGADIILGNTYHL 74
Query: 63 YLRPGEKVVEELGGLHRFAQFYGSFLTDSGGFQAFSLSDNVKLQEDGIVFKSHIDGSKHL 122
LRPG + + +LGGLH F + LTDSGG+Q SLS K E+G+ FKSH+DGS+H+
Sbjct: 75 MLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDGSRHM 134
Query: 123 FTPAKVLDIQYSLNSDIMMVLDDLVGLPAPLKRLEESIKRSAKWANMSLEYHKEKNRPSN 182
+P + ++IQ+ L SDI+M + PA R S++RS +WA S + + +
Sbjct: 135 LSPERSIEIQHLLGSDIVMAFAECTPYPATPSRAASSMERSMRWAKRSRDAFDSRKEQAE 194
Query: 183 N--LFAIIQGGTHLKMRSLSV-GLTHEGFDGYAIGGLAVGESADEMLETIAHTAPLLPKD 239
N LF I QG +R S L GFDGYA+GGLAVGE DEM + + P+LP D
Sbjct: 195 NAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVPMLPDD 254
Query: 240 KPRYLMGVGTPENILDAISLGVDMFDCVMPTRNARNATLFTHSGKISIKNAPYKLDNTPI 299
KP YLMGVG P++I+ A+ G+DMFDCV+PTR+ RN FT G I+I+NA + D P+
Sbjct: 255 KPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKPL 314
Query: 300 EENCACYACKRYSKAYLHHLFRAKELTYARLASLHNLHFYLELVKNARNAILEKRFLSFK 359
+ C C C+++S+AY+HHL RA E+ A L + HN+ FY +L++ R++I E RF F
Sbjct: 315 DSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFA 374
Query: 360 KEFLEKYNSRS 370
++F +Y +R+
Sbjct: 375 QDFRARYFARN 385
>pdb|1WKF| Trna-Guanine Transglycosylase
Length = 386
Score = 322 bits (825), Expect = 4e-89
Identities = 160/371 (43%), Positives = 228/371 (61%), Gaps = 4/371 (1%)
Query: 3 FQLQATDNNARAGLLNLAHSQVATPVFMPVGTQGCIKSLDATDAQEILGAKLILANTYHM 62
F + A + AR G + + + TP FMPVGT +K+L + GA +IL NTYH+
Sbjct: 16 FSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKP-ETVRATGADIILGNTYHL 74
Query: 63 YLRPGEKVVEELGGLHRFAQFYGSFLTDSGGFQAFSLSDNVKLQEDGIVFKSHIDGSKHL 122
LRPG + + +LGGLH F + LTDSGG+Q SLS K E+G+ FKSH+DGS+H+
Sbjct: 75 MLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDGSRHM 134
Query: 123 FTPAKVLDIQYSLNSDIMMVLDDLVGLPAPLKRLEESIKRSAKWANMSLEYHKEKNRPSN 182
+P + ++IQ+ L SDI+M + PA R S++RS +WA S + + +
Sbjct: 135 LSPERSIEIQHLLGSDIVMAFYECTPYPATPSRAASSMERSMRWAKRSRDAFDSRKEQAE 194
Query: 183 N--LFAIIQGGTHLKMRSLSV-GLTHEGFDGYAIGGLAVGESADEMLETIAHTAPLLPKD 239
N LF I QG +R S L GFDGYA+GGLAVGE DEM + + P+LP D
Sbjct: 195 NAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVPMLPDD 254
Query: 240 KPRYLMGVGTPENILDAISLGVDMFDCVMPTRNARNATLFTHSGKISIKNAPYKLDNTPI 299
KP YLMGVG P++I+ A+ G+DMFDCV+PTR+ RN FT G I+I+NA + D P+
Sbjct: 255 KPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKPL 314
Query: 300 EENCACYACKRYSKAYLHHLFRAKELTYARLASLHNLHFYLELVKNARNAILEKRFLSFK 359
+ C C C+++S+AY+HHL RA E+ A L + HN+ FY +L++ R++I E RF F
Sbjct: 315 DSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFA 374
Query: 360 KEFLEKYNSRS 370
++F +Y +R+
Sbjct: 375 QDFRARYFARN 385
>pdb|1IQ8|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii
pdb|1IQ8|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii
pdb|1IT7|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase Complexed With Guanine
pdb|1IT7|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase Complexed With Guanine
pdb|1IT8|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii Complexed
With Archaeosine Precursor, Preq0
pdb|1IT8|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii Complexed
With Archaeosine Precursor, Preq0
Length = 582
Score = 88.2 bits (217), Expect = 1e-18
Identities = 89/356 (25%), Positives = 153/356 (42%), Gaps = 42/356 (11%)
Query: 1 MDFQLQATDNNARAGLLNLAHSQVATPVFMPVGTQGCIKSLDATDAQEILGAKLILANTY 60
+ F+++A D R G L + ++ TP MPV + + E +G ++I+ N+Y
Sbjct: 8 LKFEIKARDGAGRIGKLEVNGKKIETPAIMPVVNPK--QMVVEPKELEKMGFEIIITNSY 65
Query: 61 HMYLRPGEKVVEELGGLHRFAQFYGSFLTDSGGFQAFSLSDNVKLQEDGIVFKSHIDGSK 120
+Y + G+HR + G DSG FQ L + G + S+
Sbjct: 66 IIYKDEELRRKALELGIHRMLDYNGIIEVDSGSFQ---------LMKYGSIEVSN----- 111
Query: 121 HLFTPAKVLDIQYSLNSDIMMVLDDLVGLPAPLKRLEESIKRSAKWANMSLEYHKEKNRP 180
++++ Q+ + DI LD AP E+++K + + E + K P
Sbjct: 112 -----REIIEFQHRIGVDIGTFLDIPTPPDAPR---EQAVKELEITLSRAREAEEIKEIP 163
Query: 181 SNNLFAIIQGGTHLKMRSLSVG-LTHEGFDGYAIGG---LAVGESADEMLETIAHTAPLL 236
N A IQG T+ +R + L+ F+ + IGG L ++++ + + L
Sbjct: 164 MN---ATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMAL 220
Query: 237 PKDKPRYLMGVGTPENILDAISLGVDMFDCVMPTRNARNATLFTHSGKISIKNAPYKLDN 296
D+P +L G G P A+++GVD+FD A++ T G + +LD
Sbjct: 221 RPDRPVHLFGAGHPIVFALAVAMGVDLFDSASYALYAKDDRYMTPEGTKRLD----ELDY 276
Query: 297 TPIEENCACYACKRYSKAYLHHLFRAKELTYARLASLHNLHFYLELVKNARNAILE 352
P C+C C +Y+ L + + + RL +LHNL E +K + AI E
Sbjct: 277 FP----CSCPVCSKYTPQELREMPKEER---TRLLALHNLWVIKEEIKRVKQAIKE 325
>pdb|1GKL|A Chain A, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Ferulic Acid
pdb|1GKL|B Chain B, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Ferulic Acid
Length = 297
Score = 27.7 bits (60), Expect = 2.2
Identities = 12/39 (30%), Positives = 20/39 (50%)
Query: 197 RSLSVGLTHEGFDGYAIGGLAVGESADEMLETIAHTAPL 235
+ ++ H GF G+A+GGL L+ +A+ PL
Sbjct: 151 QGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPL 189
>pdb|1J53|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The
Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 8.5
pdb|1J54|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The
Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 5.8
Length = 186
Score = 27.3 bits (59), Expect = 2.8
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 46 AQEILGAKLILANTYHMYLRPGEKVVEELGGLHRFAQFYGSFLTDSGGF 94
A E++ +L N +H+YL+P V E G+H A FL D F
Sbjct: 35 AVEVVNRRLT-GNNFHVYLKPDRLVDPEAFGVHGIAD---EFLLDKPTF 79
>pdb|1GKK|A Chain A, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum
pdb|1GKK|B Chain B, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum
Length = 297
Score = 26.6 bits (57), Expect = 4.8
Identities = 11/39 (28%), Positives = 18/39 (45%)
Query: 197 RSLSVGLTHEGFDGYAIGGLAVGESADEMLETIAHTAPL 235
+ ++ H GF G+ GGL L+ +A+ PL
Sbjct: 151 QGIAASRXHRGFGGFXXGGLTTWYVXVNCLDYVAYFXPL 189
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 327
Score = 26.2 bits (56), Expect = 6.3
Identities = 21/78 (26%), Positives = 35/78 (43%), Gaps = 4/78 (5%)
Query: 217 AVGESADEMLETIAHTAPLLPKDKPRYLMGVGTPENILDAISLGVDMFDCVMPTRNARNA 276
A G+ +L IA +L KD+P L + P+ + + +++ DC P A
Sbjct: 12 AAGQIGYSLLFRIA-AGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEA 70
Query: 277 TLFTHSGKISIKNAPYKL 294
T K++ K+A Y L
Sbjct: 71 ---TDDPKVAFKDADYAL 85
>pdb|1M10|A Chain A, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 208
Score = 25.8 bits (55), Expect = 8.3
Identities = 18/71 (25%), Positives = 35/71 (48%), Gaps = 10/71 (14%)
Query: 121 HLFTPAKVLDIQYSLNSDIMMVLDDLVGLPAPLKRLEESIKRSAKWANMS-LEYH----- 174
H F +++LD+ + L+ + + L A + + E ++ S KW ++ +EYH
Sbjct: 8 HDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMEQLRISQKWVRVAVVEYHDGSHA 67
Query: 175 ----KEKNRPS 181
K++ RPS
Sbjct: 68 YIGLKDRKRPS 78
>pdb|1F2F|A Chain A, Src Sh2 Thref1trp Mutant
pdb|1F1W|A Chain A, Src Sh2 Thref1trp Mutant Complexed With The Phosphopeptide
S(Ptr)vnvqn
Length = 104
Score = 25.8 bits (55), Expect = 8.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 90 DSGGFQAFSLSDNVKLQEDGIVFKSHIDGSKHLFT 124
DSGGF +S + LQ+ + H DG H T
Sbjct: 65 DSGGFYIWSRTQFSSLQQLVAYYSKHADGLCHRLT 99
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,127,684
Number of Sequences: 13198
Number of extensions: 90803
Number of successful extensions: 231
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 12
length of query: 371
length of database: 2,899,336
effective HSP length: 90
effective length of query: 281
effective length of database: 1,711,516
effective search space: 480935996
effective search space used: 480935996
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)