BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644910|ref|NP_207080.1| hypothetical protein
[Helicobacter pylori 26695]
         (480 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1NFP|    Luxf Gene Product (Nonfluorescent Flavoprotein)...    28  2.3
pdb|2AAK|    Ubiquitin Conjugating Enzyme From Arabidopsis T...    27  5.0

>pdb|1NFP|   Luxf Gene Product (Nonfluorescent Flavoprotein) Complexed With
           Myristic Acid And Fmn
          Length = 228

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 5/51 (9%)

Query: 388 LLYDFDPNKRYKNEIVNHYENLANAFNRKIEIFQTDIRNPIM-YLNSLRNP 437
           LL+ +D +++ + E++NHY+  A  FN  I     ++R+ +M ++N   NP
Sbjct: 92  LLFKWDDSQQKRIELLNHYQAAAAKFNVDI----ANVRHRLMLFVNVNDNP 138



>pdb|2AAK|   Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
          Length = 152

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 366 LDINEDMSSVIFDVSMQM-DLGLLLYDFDPNKRYKNEIVNHYENLANAFNRKI 417
           LDI ++  S I+DV+  +  +  LL D +PN    +E    Y      +NR++
Sbjct: 89  LDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRV 141



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.324    0.141    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,585,309
Number of Sequences: 13198
Number of extensions: 106302
Number of successful extensions: 242
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 2
length of query: 480
length of database: 2,899,336
effective HSP length: 92
effective length of query: 388
effective length of database: 1,685,120
effective search space: 653826560
effective search space used: 653826560
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)