BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644911|ref|NP_207081.1| 3-dehydroquinate synthase
(aroB) [Helicobacter pylori 26695]
(343 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DQS|B Chain B, Crystal Structure Of Dehydroquinate Syn... 167 2e-42
pdb|1DTH|A Chain A, Metalloprotease >gi|1942364|pdb|1DTH|B ... 28 1.2
pdb|1ATL|A Chain A, Mol_id: 1; Molecule: Atrolysin C; Chain... 28 1.2
pdb|1WDB| Nmr Solution Structure Of Bovine Cytochrome B5,... 28 1.5
pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of... 28 2.0
pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Tri... 28 2.0
pdb|1CYO| Bovine Cytochrome B(5) 28 2.0
pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine M... 28 2.0
pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cyt... 28 2.0
pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsi... 28 2.0
pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cyt... 28 2.0
pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Try... 27 4.4
pdb|1KQ3|A Chain A, Crystal Structure Of Glycerol Dehydroge... 26 5.8
pdb|1QI7|A Chain A, The Crystal Structure At 2.0 A Of Sapor... 25 9.8
pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl C... 25 9.8
pdb|1HF2|B Chain B, Crystal Structure Of The Bacterial Cell... 25 9.8
>pdb|1DQS|B Chain B, Crystal Structure Of Dehydroquinate Synthase (Dhqs)
Complexed With Carbaphosphonate, Nad+ And Zn2+
pdb|1DQS|A Chain A, Crystal Structure Of Dehydroquinate Synthase (Dhqs)
Complexed With Carbaphosphonate, Nad+ And Zn2+
Length = 393
Score = 167 bits (423), Expect = 2e-42
Identities = 109/287 (37%), Positives = 153/287 (52%), Gaps = 33/287 (11%)
Query: 85 RHSLMIALGGGVISDMVGFASSIYFRGIDFINIPTTLLAQVDASVGGKTGINTPYGKNLI 144
R +++IALGGGVI D+ GF +S Y RG+ ++ +PTTLLA VD+S+GGKT I+TP GKNLI
Sbjct: 105 RDTVVIALGGGVIGDLTGFVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLI 164
Query: 145 GSFHQPKAVYMDLAFLKTLEKREFQAGVAEIIKMAVCFDKN----LVERLET-------- 192
G+ QP +Y+DL FL+TL REF G+AE+IK A + L E ET
Sbjct: 165 GAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRRE 224
Query: 193 --------KDLKDCLEEVIFQSVNIKAQVVVQDEKEQNIRAGLNYGHTFGHAIEKETDYE 244
+ ++ L+ I S KA VV DE+E +R LN+GH+ GHAIE
Sbjct: 225 VTPGEHRFEGTEEILKARILASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILT-P 283
Query: 245 RFLHGEAIAIGMRMANDLALSLGMLTLKEYERIENLLKKFDLIFHYKILDLQKFYE---- 300
+ LHGE +AIGM +LA LG+L RI L + L K ++K
Sbjct: 284 QILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHC 343
Query: 301 -------RLFLDKKSENKTIKFILPKGVGA-FEVASHIPKETIIKVL 339
+ LDKK++ K +L +G +E + + I+V+
Sbjct: 344 SVDQLMFNMALDKKNDGPKKKIVLLSAIGTPYETRASVVANEDIRVV 390
>pdb|1DTH|A Chain A, Metalloprotease
pdb|1DTH|B Chain B, Metalloprotease
Length = 203
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 214 VVQDEKEQNIRAGLNYGHTFGHAIEKETDYERFLHGEAIAI 254
+VQD N+ G+ H GH + E D + L G ++ I
Sbjct: 126 IVQDHSPINLLMGVTMAHELGHNLGMEHDGKDCLRGASLCI 166
>pdb|1ATL|A Chain A, Mol_id: 1; Molecule: Atrolysin C; Chain: A, B, C, D;
Synonym: Hemorrhagic Toxin C, Form D; Ec: 3.4.24.42;
Heterogen: Sc 44463
pdb|1ATL|B Chain B, Mol_id: 1; Molecule: Atrolysin C; Chain: A, B, C, D;
Synonym: Hemorrhagic Toxin C, Form D; Ec: 3.4.24.42;
Heterogen: Sc 44463
pdb|1HTD|A Chain A, Mol_id: 1; Molecule: Atrolysin C; Chain: A, B; Synonym:
Hemorrhagic Toxin C, Form D; Ec: 3.4.24.42
pdb|1HTD|B Chain B, Mol_id: 1; Molecule: Atrolysin C; Chain: A, B; Synonym:
Hemorrhagic Toxin C, Form D; Ec: 3.4.24.42
Length = 202
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 214 VVQDEKEQNIRAGLNYGHTFGHAIEKETDYERFLHGEAIAI 254
+VQD N+ G+ H GH + E D + L G ++ I
Sbjct: 125 IVQDHSPINLLMGVTMAHELGHNLGMEHDGKDCLRGASLCI 165
>pdb|1WDB| Nmr Solution Structure Of Bovine Cytochrome B5, Minimized Average
Structure
Length = 104
Score = 28.1 bits (61), Expect = 1.5
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 259 ANDLALSLGMLTLKEYERIENLLKKFDLIFHYKILDLQKFYE 300
A + + ++ TL+E ++ N K LI HYK+ DL KF E
Sbjct: 1 AEESSKAVKYYTLEEIQKHNNS-KSTWLILHYKVYDLTKFLE 41
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
Trypsin-Solubilized Fragment Of Cytochrome B5
Length = 82
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/31 (48%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Query: 270 TLKEYERIENLLKKFDLIFHYKILDLQKFYE 300
TL+E ++ N K LI HYK+ DL KF E
Sbjct: 6 TLEEIQKHNNS-KSTWLILHYKVYDLTKFLE 35
>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant
(E48aE56AD60A)
Length = 82
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/31 (48%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Query: 270 TLKEYERIENLLKKFDLIFHYKILDLQKFYE 300
TL+E ++ N K LI HYK+ DL KF E
Sbjct: 6 TLEEIQKHNNS-KSTWLILHYKVYDLTKFLE 35
>pdb|1CYO| Bovine Cytochrome B(5)
Length = 93
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/31 (48%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Query: 270 TLKEYERIENLLKKFDLIFHYKILDLQKFYE 300
TL+E ++ N K LI HYK+ DL KF E
Sbjct: 8 TLEEIQKHNNS-KSTWLILHYKVYDLTKFLE 37
>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
pdb|1F04|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
Length = 82
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/31 (48%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Query: 270 TLKEYERIENLLKKFDLIFHYKILDLQKFYE 300
TL+E ++ N K LI HYK+ DL KF E
Sbjct: 6 TLEEIQKHNNS-KSTWLILHYKVYDLTKFLE 35
>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5
Length = 82
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/31 (48%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Query: 270 TLKEYERIENLLKKFDLIFHYKILDLQKFYE 300
TL+E ++ N K LI HYK+ DL KF E
Sbjct: 6 TLEEIQKHNNS-KSTWLILHYKVYDLTKFLE 35
>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/31 (48%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Query: 270 TLKEYERIENLLKKFDLIFHYKILDLQKFYE 300
TL+E ++ N K LI HYK+ DL KF E
Sbjct: 6 TLEEIQKHNNS-KSTWLILHYKVYDLTKFLE 35
>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5
Length = 82
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/31 (48%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Query: 270 TLKEYERIENLLKKFDLIFHYKILDLQKFYE 300
TL+E ++ N K LI HYK+ DL KF E
Sbjct: 6 TLEEIQKHNNS-KSTWLILHYKVYDLTKFLE 35
>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 26.6 bits (57), Expect = 4.4
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 270 TLKEYERIENLLKKFDLIFHYKILDLQKFYE 300
TL+E ++ N K LI HYK+ DL K+ E
Sbjct: 6 TLEEIQKHNNS-KSTWLILHYKVYDLTKYLE 35
>pdb|1KQ3|A Chain A, Crystal Structure Of Glycerol Dehydrogenase (Tm0423) From
Thermotoga Maritima At 1.5 A Resolution
Length = 376
Score = 26.2 bits (56), Expect = 5.8
Identities = 44/197 (22%), Positives = 74/197 (37%), Gaps = 32/197 (16%)
Query: 88 LMIALGGGVISDMVGFASSIYFRGIDFINIPTTLLAQVDASVGGKTGINTPYG--KNLIG 145
+++ +GGG D + Y + +PT +A DA + I TP G K +
Sbjct: 97 VVVGIGGGKTLDTAKAVA--YKLKKPVVIVPT--IASTDAPCSALSVIYTPNGEFKRYLF 152
Query: 146 SFHQPKAVYMDLAFLKTLEKREFQAGVAEII----KMAVCFDK---NLVERLETKDL--- 195
P V +D + R AG+ + + + C K N+ RL +
Sbjct: 153 LPRNPDVVLVDTEIVAKAPARFLVAGMGDALATWFEAESCKQKYAPNMTGRLGSMTAYAL 212
Query: 196 -KDCLEEVIFQSVNIKAQVV---VQDEKEQNIRA------------GLNYGHTFGHAIEK 239
+ C E ++ V K V V E+ + A GL H + +
Sbjct: 213 ARLCYETLLEYGVLAKRSVEEKSVTPALEKIVEANTLLSGLGFESGGLAAAHAIHNGLTV 272
Query: 240 ETDYERFLHGEAIAIGM 256
+ ++LHGE +AIG+
Sbjct: 273 LENTHKYLHGEKVAIGV 289
>pdb|1QI7|A Chain A, The Crystal Structure At 2.0 A Of Saporin So6, A Ribosome
Inactivating Protein From Saponaria Officinalis
Length = 253
Score = 25.4 bits (54), Expect = 9.8
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query: 204 FQSVNIKAQVVVQDEKEQNIRAGLNYGHTFGHAIEKETDYERFLHGEA--IAIGMRMAND 261
+QS+ AQ+ D+ + + G++ TF A+ K+ R + EA + I ++M +
Sbjct: 120 YQSIEKNAQITQGDKSRKELGLGIDLLLTFMEAVNKKA---RVVKNEARFLLIAIQMTAE 176
Query: 262 LALSLGMLTLKEYERIENLLKK 283
+A + I+NL+ K
Sbjct: 177 VA---------RFRYIQNLVTK 189
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 25.4 bits (54), Expect = 9.8
Identities = 11/52 (21%), Positives = 26/52 (49%)
Query: 292 ILDLQKFYERLFLDKKSENKTIKFILPKGVGAFEVASHIPKETIIKVLEKWH 343
+++ + YER K+ + +K +G FE+ ++ +T +++ WH
Sbjct: 215 LIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIIDGWH 266
>pdb|1HF2|B Chain B, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|C Chain C, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|A Chain A, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|D Chain D, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
Length = 210
Score = 25.4 bits (54), Expect = 9.8
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 202 VIFQSVNIKAQ------VVVQDEKEQNIRAGLNYGHTFGHAIEKETDYERFL 247
++F +VN A+ VVV + + NIRAGLN G G A+ D + L
Sbjct: 121 IVFGNVNKGAEILAGGSVVVFGKAQGNIRAGLNEG---GQAVVAALDLQTSL 169
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.141 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,835,200
Number of Sequences: 13198
Number of extensions: 74427
Number of successful extensions: 225
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 16
length of query: 343
length of database: 2,899,336
effective HSP length: 89
effective length of query: 254
effective length of database: 1,724,714
effective search space: 438077356
effective search space used: 438077356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)