BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644661|ref|NP_206830.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(177 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DBN|A Chain A, Maackia Amurensis Leukoagglutinin (Lect... 27 1.7
pdb|1KK6|B Chain B, Crystal Structure Of Vat(D) (Form I) >g... 25 3.9
pdb|1JSA| Myristoylated Recoverin With Two Calciums Bound... 25 6.6
pdb|1REC| Recoverin (Calcium Sensor In Vision) 25 6.6
pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant,... 25 6.6
>pdb|1DBN|A Chain A, Maackia Amurensis Leukoagglutinin (Lectin) With
Sialyllactose
pdb|1DBN|B Chain B, Maackia Amurensis Leukoagglutinin (Lectin) With
Sialyllactose
Length = 239
Score = 26.6 bits (57), Expect = 1.7
Identities = 9/27 (33%), Positives = 16/27 (58%)
Query: 49 NENTPNNKEVKTLARDVYFVQTYDPKD 75
N N+ ++ ++ + D YF +YDP D
Sbjct: 114 NSNSDSSNQIVAVEFDTYFAHSYDPWD 140
>pdb|1KK6|B Chain B, Crystal Structure Of Vat(D) (Form I)
pdb|1KK6|C Chain C, Crystal Structure Of Vat(D) (Form I)
pdb|1KK4|D Chain D, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK4|A Chain A, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK4|F Chain F, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KHR|D Chain D, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK6|A Chain A, Crystal Structure Of Vat(D) (Form I)
pdb|1KK4|B Chain B, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK4|C Chain C, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK5|C Chain C, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KK5|D Chain D, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KHR|E Chain E, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK5|A Chain A, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KK5|B Chain B, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KHR|C Chain C, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KHR|B Chain B, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK5|E Chain E, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KK5|F Chain F, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KHR|A Chain A, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KHR|F Chain F, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK4|E Chain E, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
Length = 209
Score = 25.4 bits (54), Expect = 3.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 107 QSLINQQVEVKYYGWRINLFN 127
Q INQ +++K++ W I++ N
Sbjct: 170 QDTINQLLDIKWWNWPIDIIN 190
>pdb|1JSA| Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
pdb|1IKU| Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 202
Score = 24.6 bits (52), Expect = 6.6
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 16/52 (30%)
Query: 8 RNVVLFILTAIFLAFMLLVSYCMPHYSAAVISGVEVKRMNENENTPNNKEVK 59
+N VL I+TAIF +IS + K + E+ENTP + K
Sbjct: 119 KNEVLEIVTAIF----------------KMISPEDTKHLPEDENTPEKRAEK 154
>pdb|1REC| Recoverin (Calcium Sensor In Vision)
Length = 201
Score = 24.6 bits (52), Expect = 6.6
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 16/52 (30%)
Query: 8 RNVVLFILTAIFLAFMLLVSYCMPHYSAAVISGVEVKRMNENENTPNNKEVK 59
+N VL I+TAIF +IS + K + E+ENTP + K
Sbjct: 118 KNEVLEIVTAIF----------------KMISPEDTKHLPEDENTPEKRAEK 153
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 202
Score = 24.6 bits (52), Expect = 6.6
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 16/52 (30%)
Query: 8 RNVVLFILTAIFLAFMLLVSYCMPHYSAAVISGVEVKRMNENENTPNNKEVK 59
+N VL I+TAIF +IS + K + E+ENTP + K
Sbjct: 119 KNEVLEIVTAIF----------------KMISPEDTKHLPEDENTPEKRAEK 154
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.327 0.139 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 902,781
Number of Sequences: 13198
Number of extensions: 32803
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 5
length of query: 177
length of database: 2,899,336
effective HSP length: 82
effective length of query: 95
effective length of database: 1,817,100
effective search space: 172624500
effective search space used: 172624500
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)