BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644913|ref|NP_207083.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(418 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GD1|O Chain O, holo-D-Glyceraldehyde-3-Phosphate Dehyd... 28 1.9
pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenas... 28 1.9
pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenas... 27 3.3
pdb|1ERW| Human Thioredoxin Double Mutant With Cys 32 Rep... 27 3.3
pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase 27 4.3
pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases Fro... 27 5.6
pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases Fro... 27 5.6
pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant ... 27 5.6
pdb|3TRX| Thioredoxin (Reduced Form) >gi|231098|pdb|4TRX|... 26 9.5
>pdb|1GD1|O Chain O, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|1GD1|P Chain P, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|1GD1|Q Chain Q, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|1GD1|R Chain R, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|O Chain O, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|P Chain P, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|Q Chain Q, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|R Chain R, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
Length = 334
Score = 28.1 bits (61), Expect = 1.9
Identities = 16/59 (27%), Positives = 26/59 (43%), Gaps = 1/59 (1%)
Query: 28 FSTTLEEQEADIIIINSCTVTNGADSAVRSYAKKMARLDKEVLFTGCGVKTQGKELFEK 86
F L+ + +++ +N T N ++ Y RLD EV G + GKE+ K
Sbjct: 17 FRAALKNPDIEVVAVNDLTDANTLAHLLK-YDSVHGRLDAEVSVNGNNLVVNGKEIIVK 74
>pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro
188 Replaced By Ser Complexed With Nadp+
pdb|2DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro
188 Replaced By Ser Complexed With Nadp+
pdb|2DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro
188 Replaced By Ser Complexed With Nadp+
pdb|2DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro
188 Replaced By Ser Complexed With Nadp+
pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro
188 Replaced By Ser Complexed With Nad+
pdb|1DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro
188 Replaced By Ser Complexed With Nad+
pdb|1DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro
188 Replaced By Ser Complexed With Nad+
pdb|1DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro
188 Replaced By Ser Complexed With Nad+
Length = 334
Score = 28.1 bits (61), Expect = 1.9
Identities = 16/59 (27%), Positives = 26/59 (43%), Gaps = 1/59 (1%)
Query: 28 FSTTLEEQEADIIIINSCTVTNGADSAVRSYAKKMARLDKEVLFTGCGVKTQGKELFEK 86
F L+ + +++ +N T N ++ Y RLD EV G + GKE+ K
Sbjct: 17 FRAALKNPDIEVVAVNGLTDANTLAHLLK-YDSVHGRLDAEVSVNGNNLVVNGKEIIVK 74
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 27.3 bits (59), Expect = 3.3
Identities = 17/61 (27%), Positives = 27/61 (43%), Gaps = 5/61 (8%)
Query: 28 FSTTLEEQEADIIIINSCTVTNGADSAVR--SYAKKMARLDKEVLFTGCGVKTQGKELFE 85
F L+ + +++ +N T GA++ Y RLD EV G + GKE+
Sbjct: 17 FRAALKNPDIEVVAVND---TGGANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIV 73
Query: 86 K 86
K
Sbjct: 74 K 74
>pdb|1ERW| Human Thioredoxin Double Mutant With Cys 32 Replaced By Ser And
Cys 35 Replaced By Ser
Length = 105
Score = 27.3 bits (59), Expect = 3.3
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 23 ENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAKKMARLDKEVLF----------- 71
E+ F L+ +++++ +G ++ + ++ V+F
Sbjct: 6 ESKTAFQEALDAAGDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDV 65
Query: 72 -TGCGVKTQGK-ELFEKGFLKGVFGHDNKEKINALLQE 107
+ C VK + F+KG G F NKEK+ A + E
Sbjct: 66 ASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 26.9 bits (58), Expect = 4.3
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 33 EEQEADIIIINSCTVTNGADSAVRSYAKKMA-RLDKEVLFTGCGVKTQGKELFEKGFLKG 91
+EQ D +I G +VR + + A +L ++ F G GV+ EKG +
Sbjct: 242 QEQPEDFVI------ATGVQYSVRQFVEMAAAQLGIKLRFEGTGVE-------EKGIVVS 288
Query: 92 VFGHD--NKEKINALLQEKKRFFIDDNLENKHLDTTMVSEFVG 132
V GHD + + ++ R+F +E D T E +G
Sbjct: 289 VTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLG 331
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 26.6 bits (57), Expect = 5.6
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 168 ILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQI 227
IL Q L + ++ + L+ V + K+ SN+ RL LS +G + +L +
Sbjct: 75 ILSQCSKLQNLSLEGLRLSDPIVNTLAKN--SNLVRL--NLSGCSGFSEFALQTLLSSCS 130
Query: 228 NDEFLELLE-EDFLEKHLHIALQHSHDLMLERMN----RRNRTKSDRELL 272
+ L L DF EKH+ +A+ H + + ++N R+N KSD L
Sbjct: 131 RLDELNLSWCFDFTEKHVQVAVAHVSE-TITQLNLSGYRKNLQKSDLSTL 179
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 336
Score = 26.6 bits (57), Expect = 5.6
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 168 ILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQI 227
IL Q L + ++ + L+ V + K+ SN+ RL LS +G + +L +
Sbjct: 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKN--SNLVRL--NLSGCSGFSEFALQTLLSSCS 168
Query: 228 NDEFLELLE-EDFLEKHLHIALQHSHDLMLERMN----RRNRTKSDRELL 272
+ L L DF EKH+ +A+ H + + ++N R+N KSD L
Sbjct: 169 RLDELNLSWCFDFTEKHVQVAVAHVSE-TITQLNLSGYRKNLQKSDLSTL 217
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 26.6 bits (57), Expect = 5.6
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 355 AFRQLQLKLNTPLKALVEVQKDGEFKALDQF-FNPIKIKSD---KPLRASFLE----IKE 406
+F +L L NTP A + G LD+ F I +K++ + + SF+E +K
Sbjct: 107 SFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESLPFLKS 166
Query: 407 YEIKER 412
E+ ER
Sbjct: 167 LEVSER 172
>pdb|3TRX| Thioredoxin (Reduced Form)
pdb|4TRX| Thioredoxin (Reduced Form)
Length = 105
Score = 25.8 bits (55), Expect = 9.5
Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 1/35 (2%)
Query: 74 CGVK-TQGKELFEKGFLKGVFGHDNKEKINALLQE 107
C VK T + F+KG G F NKEK+ A + E
Sbjct: 69 CEVKCTPTFQFFKKGQKVGEFSGANKEKLEATINE 103
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,288,500
Number of Sequences: 13198
Number of extensions: 92902
Number of successful extensions: 336
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 9
length of query: 418
length of database: 2,899,336
effective HSP length: 91
effective length of query: 327
effective length of database: 1,698,318
effective search space: 555349986
effective search space used: 555349986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)