BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644914|ref|NP_207084.1| cell division protein
(ftsH) [Helicobacter pylori 26695]
(550 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of ... 234 1e-62
pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 233 5e-62
pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 233 5e-62
pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And ... 141 2e-34
pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfon... 48 2e-06
pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomet... 47 6e-06
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptida... 45 2e-05
pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Loc... 45 2e-05
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Cha... 45 2e-05
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 40 5e-04
pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v 40 5e-04
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 40 5e-04
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 40 5e-04
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 40 5e-04
pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Ch... 39 0.001
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 39 0.001
pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive... 36 0.013
pdb|1NSF| D2 Hexamerization Domain Of N-Ethylmaleimide Se... 36 0.013
pdb|1IXR|C Chain C, Ruva-Ruvb Complex 35 0.017
pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva D... 35 0.017
pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermoph... 35 0.017
pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader S... 33 0.063
pdb|1E29|A Chain A, Psii Associated Cytochrome C549 From Sy... 32 0.24
pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:a... 31 0.41
pdb|4BLM|A Chain A, Beta-Lactamase (E.C.3.5.2.6) (Penicilli... 30 0.53
pdb|1I2W|B Chain B, Beta-Lactamase From Bacillus Lichenifor... 30 0.53
pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With As... 30 0.53
pdb|1MBL|A Chain A, Beta-Lactamase (E.C.3.5.2.6) Mutant Wit... 30 0.70
pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mut... 30 0.70
pdb|1PIO|A Chain A, Mol_id: 1; Molecule: Beta-Lactamase; Ch... 30 0.70
pdb|1JBK|A Chain A, Crystal Structure Of The First Nuceloti... 30 0.70
pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mut... 30 0.70
pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6) >gi|493890|pdb|1BL... 30 0.70
pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphyl... 30 0.70
pdb|1AK2| Adenylate Kinase Isoenzyme-2 >gi|1633467|pdb|2A... 30 0.91
pdb|1FTS| Signal Recognition Particle Receptor From E. Coli 29 1.2
pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant 29 1.2
pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant 29 1.6
pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From ... 29 1.6
pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Co... 29 1.6
pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication In... 28 2.0
pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex O... 28 2.0
pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Fre... 28 2.6
pdb|1EYQ|A Chain A, Chalcone Isomerase And Naringenin >gi|1... 27 4.5
pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose... 27 4.5
pdb|1JX0|A Chain A, Chalcone Isomerase--Y106f Mutant >gi|22... 27 4.5
pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilu... 27 4.5
pdb|1JX1|A Chain A, Chalcone Isomerase--T48a Mutant >gi|222... 27 5.9
pdb|1J8M|F Chain F, Signal Recognition Particle Conserved G... 27 5.9
pdb|1PYP| Inorganic Pyrophosphatase (E.C.3.6.1.1) 27 7.7
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 234 bits (598), Expect = 1e-62
Identities = 123/251 (49%), Positives = 173/251 (68%), Gaps = 5/251 (1%)
Query: 155 DALGVRFEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVGKTMIAKA 214
D + F D+AG DE KEE+ E+++YL+ P ++Q LG +PKGVL++GPPG GKT++AKA
Sbjct: 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKA 64
Query: 215 LASEARVPFFYESGSAFSQIYVGAGAKKVHELFMHAKRHAPSIIFIDEIDALGKARG--- 271
+A EA+VPFF SGS F +++VG GA +V ++F AK+ AP IIFIDEIDA+G+ RG
Sbjct: 65 IAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL 124
Query: 272 GHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLPDL 331
G DERE TLNQ+L EMDGF N+ ++VI ATN+ +V+D ALLR RFDR++ + LPD+
Sbjct: 125 GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 184
Query: 332 LERQSILEKLLENKKHA--LNYLKIAKICVGFSGAMLATLINESALNALKHQRTEIAESD 389
R+ IL+ + A ++ IA+ GFSGA LA L+NE+AL A + + ++ +
Sbjct: 185 RGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVE 244
Query: 390 ILEVKDKIAYG 400
+ KDKI G
Sbjct: 245 FEKAKDKIMMG 255
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 233 bits (593), Expect = 5e-62
Identities = 124/243 (51%), Positives = 169/243 (69%), Gaps = 5/243 (2%)
Query: 155 DALGVRFEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVGKTMIAKA 214
+A V F+D+AG +E KEEL E++++LKNP ++ ++G +PKGVLL+GPPGVGKT +A+A
Sbjct: 33 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 92
Query: 215 LASEARVPFFYESGSAFSQIYVGAGAKKVHELFMHAKRHAPSIIFIDEIDALGKARG--- 271
+A EARVPF SGS F +++VG GA +V +LF AKRHAP I+FIDEIDA+G+ RG
Sbjct: 93 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 152
Query: 272 GHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLPDL 331
G +DERE TLNQLL EMDGF ++ +VV+ ATN+ +++D ALLR RFDR+I I PD+
Sbjct: 153 GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 212
Query: 332 LERQSILEKLLENKKHA--LNYLKIAKICVGFSGAMLATLINESALNALKHQRTEIAESD 389
R+ IL K A ++ +AK GF GA L L+NE+AL A + R +I D
Sbjct: 213 KGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 272
Query: 390 ILE 392
+ E
Sbjct: 273 LEE 275
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 233 bits (593), Expect = 5e-62
Identities = 124/243 (51%), Positives = 169/243 (69%), Gaps = 5/243 (2%)
Query: 155 DALGVRFEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVGKTMIAKA 214
+A V F+D+AG +E KEEL E++++LKNP ++ ++G +PKGVLL+GPPGVGKT +A+A
Sbjct: 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 68
Query: 215 LASEARVPFFYESGSAFSQIYVGAGAKKVHELFMHAKRHAPSIIFIDEIDALGKARG--- 271
+A EARVPF SGS F +++VG GA +V +LF AKRHAP I+FIDEIDA+G+ RG
Sbjct: 69 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 128
Query: 272 GHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLPDL 331
G +DERE TLNQLL EMDGF ++ +VV+ ATN+ +++D ALLR RFDR+I I PD+
Sbjct: 129 GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 188
Query: 332 LERQSILEKLLENKKHA--LNYLKIAKICVGFSGAMLATLINESALNALKHQRTEIAESD 389
R+ IL K A ++ +AK GF GA L L+NE+AL A + R +I D
Sbjct: 189 KGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 248
Query: 390 ILE 392
+ E
Sbjct: 249 LEE 251
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
Length = 458
Score = 141 bits (356), Expect = 2e-34
Identities = 83/241 (34%), Positives = 139/241 (57%), Gaps = 9/241 (3%)
Query: 159 VRFEDIAGVDEVKEELLEVIDY-LKNPKKYQDLGIFLPKGVLLIGPPGVGKTMIAKALAS 217
V ++D+ G + ++ E+++ L++P ++ +G+ P+G+LL GPPG GKT+IA+A+A+
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 218 EARVPFFYESGSAFSQIYVGAGAKKVHELFMHAKRHAPSIIFIDEIDALGKARGGHRSDE 277
E FF +G G + + F A+++AP+IIFIDE+DA+ R +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 278 REATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLPDLLERQSI 337
++QLLT MDG Q V+V+ ATN+ +D AL R RFDR + I +PD R I
Sbjct: 321 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380
Query: 338 LEKLLENKKHA--LNYLKIAKICVGFSGAMLATLINESALNALKHQRTEIAESDILEVKD 395
L+ +N K A ++ ++A G GA LA L +E+AL A++ + D+++++D
Sbjct: 381 LQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR------KKMDLIDLED 434
Query: 396 K 396
+
Sbjct: 435 E 435
>pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
Length = 444
Score = 48.1 bits (113), Expect = 2e-06
Identities = 32/85 (37%), Positives = 46/85 (53%), Gaps = 5/85 (5%)
Query: 195 PKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRH 253
PK +L+IGP GVGKT IA+ LA A PF + F+++ YVG K+V +
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG---KEVDSIIRDLTDS 106
Query: 254 APSIIFIDEIDALGKARGGHRSDER 278
A ++ EI A +AR ++ER
Sbjct: 107 AMKLVRQQEI-AKNRARAEDVAEER 130
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 47.0 bits (110), Expect = 6e-06
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 195 PKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRH 253
PK +L IGP GVGKT IA+ LA A PF + F+++ YVG K+V +
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG---KEVDSIIRDLTDS 106
Query: 254 APSIIFIDEIDALGKARGGHRSDER 278
A ++ EI A +AR ++ER
Sbjct: 107 AXKLVRQQEI-AKNRARAEDVAEER 130
>pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
Length = 443
Score = 45.4 bits (106), Expect = 2e-05
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 195 PKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRH 253
PK +L+IGP GVGKT IA+ LA A PF + F+++ YVG K+V +
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG---KEVDSIIRDLTDA 106
Query: 254 APSIIFIDEIDALGKARGGHRSDER 278
A ++ + I+ + R ++ER
Sbjct: 107 AVKMVRVQAIEK-NRYRAEELAEER 130
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 45.4 bits (106), Expect = 2e-05
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 195 PKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRH 253
PK +L+IGP GVGKT IA+ LA A PF + F+++ YVG K+V +
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG---KEVDSIIRDLTDA 105
Query: 254 APSIIFIDEIDALGKARGGHRSDER 278
A ++ + I+ + R ++ER
Sbjct: 106 AVKMVRVQAIEK-NRYRAEELAEER 129
>pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
Length = 449
Score = 45.4 bits (106), Expect = 2e-05
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 195 PKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKVHELFMHAKRH 253
PK +L+IGP GVGKT IA+ LA A PF + F+++ YVG K+V +
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG---KEVDSIIRDLTDA 112
Query: 254 APSIIFIDEIDALGKARGGHRSDER 278
A ++ + I+ + R ++ER
Sbjct: 113 AVKMVRVQAIEK-NRYRAEELAEER 136
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 40.4 bits (93), Expect = 5e-04
Identities = 36/122 (29%), Positives = 54/122 (43%), Gaps = 22/122 (18%)
Query: 154 YDALGVRF------EDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVG 207
YD+ GV+F ++ G + VK++L ++ K + D VLL GPPG+G
Sbjct: 12 YDS-GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLD-------HVLLAGPPGLG 63
Query: 208 KTMIAKALASEARVPFFYESGSAFSQIYVGAGAKKVHELFMHAKRHAPSIIFIDEIDALG 267
KT +A +ASE + SG K+ + ++FIDEI L
Sbjct: 64 KTTLAHIIASELQTNIHVTSGPVL--------VKQGDMAAILTSLERGDVLFIDEIHRLN 115
Query: 268 KA 269
KA
Sbjct: 116 KA 117
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 40.4 bits (93), Expect = 5e-04
Identities = 36/122 (29%), Positives = 54/122 (43%), Gaps = 22/122 (18%)
Query: 154 YDALGVRF------EDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVG 207
YD+ GV+F ++ G + VK++L ++ K + D VLL GPPG+G
Sbjct: 12 YDS-GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLD-------HVLLAGPPGLG 63
Query: 208 KTMIAKALASEARVPFFYESGSAFSQIYVGAGAKKVHELFMHAKRHAPSIIFIDEIDALG 267
KT +A +ASE + SG K+ + ++FIDEI L
Sbjct: 64 KTTLAHIIASELQTNIHVTSGPVL--------VKQGDMAAILTSLERGDVLFIDEIHRLN 115
Query: 268 KA 269
KA
Sbjct: 116 KA 117
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 40.4 bits (93), Expect = 5e-04
Identities = 36/122 (29%), Positives = 54/122 (43%), Gaps = 22/122 (18%)
Query: 154 YDALGVRF------EDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVG 207
YD+ GV+F ++ G + VK++L ++ K + D VLL GPPG+G
Sbjct: 12 YDS-GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLD-------HVLLAGPPGLG 63
Query: 208 KTMIAKALASEARVPFFYESGSAFSQIYVGAGAKKVHELFMHAKRHAPSIIFIDEIDALG 267
KT +A +ASE + SG K+ + ++FIDEI L
Sbjct: 64 KTTLAHIIASELQTNIHVTSGPVL--------VKQGDMAAILTSLERGDVLFIDEIHRLN 115
Query: 268 KA 269
KA
Sbjct: 116 KA 117
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 40.4 bits (93), Expect = 5e-04
Identities = 36/122 (29%), Positives = 54/122 (43%), Gaps = 22/122 (18%)
Query: 154 YDALGVRF------EDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVG 207
YD+ GV+F ++ G + VK++L ++ K + D VLL GPPG+G
Sbjct: 12 YDS-GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLD-------HVLLAGPPGLG 63
Query: 208 KTMIAKALASEARVPFFYESGSAFSQIYVGAGAKKVHELFMHAKRHAPSIIFIDEIDALG 267
KT +A +ASE + SG K+ + ++FIDEI L
Sbjct: 64 KTTLAHIIASELQTNIHVTSGPVL--------VKQGDMAAILTSLERGDVLFIDEIHRLN 115
Query: 268 KA 269
KA
Sbjct: 116 KA 117
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 40.4 bits (93), Expect = 5e-04
Identities = 36/122 (29%), Positives = 54/122 (43%), Gaps = 22/122 (18%)
Query: 154 YDALGVRF------EDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVG 207
YD+ GV+F ++ G + VK++L ++ K + D VLL GPPG+G
Sbjct: 12 YDS-GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLD-------HVLLAGPPGLG 63
Query: 208 KTMIAKALASEARVPFFYESGSAFSQIYVGAGAKKVHELFMHAKRHAPSIIFIDEIDALG 267
KT +A +ASE + SG K+ + ++FIDEI L
Sbjct: 64 KTTLAHIIASELQTNIHVTSGPVL--------VKQGDMAAILTSLERGDVLFIDEIHRLN 115
Query: 268 KA 269
KA
Sbjct: 116 KA 117
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
Length = 758
Score = 39.3 bits (90), Expect = 0.001
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 28/161 (17%)
Query: 199 LLIGPPGVGKTMIAKALA---SEARVP--------FFYESGSAFSQI-YVGAGAKKVHEL 246
LL+G GVGKT IA+ LA + VP + + GS + Y G K+ L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 247 FMHAKRHAPSIIFIDEIDAL---GKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGA 303
++ SI+FIDEI + G A GG + L+ + L + ++ VIG+
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGG------QVDAANLIKPL---LSSGKIRVIGS 321
Query: 304 TNQME---VMDEALLRSKRFDRRIFISLPDLLERQSILEKL 341
T E + ++ ++RF ++I I+ P + E I+ L
Sbjct: 322 TTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGL 361
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 39.3 bits (90), Expect = 0.001
Identities = 35/122 (28%), Positives = 54/122 (43%), Gaps = 22/122 (18%)
Query: 154 YDALGVRF------EDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVG 207
YD+ GV+F ++ G + VK++L ++ K + D VLL GPPG+G
Sbjct: 12 YDS-GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLD-------HVLLAGPPGLG 63
Query: 208 KTMIAKALASEARVPFFYESGSAFSQIYVGAGAKKVHELFMHAKRHAPSIIFIDEIDALG 267
+T +A +ASE + SG K+ + ++FIDEI L
Sbjct: 64 RTTLAHIIASELQTNIHVTSGPVL--------VKQGDMAAILTSLERGDVLFIDEIHRLN 115
Query: 268 KA 269
KA
Sbjct: 116 KA 117
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 35.8 bits (81), Expect = 0.013
Identities = 40/150 (26%), Positives = 71/150 (46%), Gaps = 14/150 (9%)
Query: 198 VLLIGPPGVGKTMIAKALASEARVPFFY----ESGSAFSQIYVGAGAKKVHELFMHAKRH 253
VLL GPP GKT +A +A E+ PF + FS+ A + + ++F A +
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSET---AKCQAMKKIFDDAYKS 123
Query: 254 APSIIFIDEIDAL--GKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMD 311
S + +D+I+ L G S+ L LL + Q ++++IG T++ +V+
Sbjct: 124 QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP--QGRKLLIIGTTSRKDVLQ 181
Query: 312 EALLRSKRFDRRIFISLPDLLERQSILEKL 341
E + + F I + P++ + +LE L
Sbjct: 182 EMEMLN-AFSTTIHV--PNIATGEQLLEAL 208
>pdb|1NSF| D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive Factor
(Nsf)
Length = 273
Score = 35.8 bits (81), Expect = 0.013
Identities = 40/150 (26%), Positives = 71/150 (46%), Gaps = 14/150 (9%)
Query: 198 VLLIGPPGVGKTMIAKALASEARVPFFY----ESGSAFSQIYVGAGAKKVHELFMHAKRH 253
VLL GPP GKT +A +A E+ PF + FS+ A + + ++F A +
Sbjct: 66 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSET---AKCQAMKKIFDDAYKS 122
Query: 254 APSIIFIDEIDAL--GKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMD 311
S + +D+I+ L G S+ L LL + Q ++++IG T++ +V+
Sbjct: 123 QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP--QGRKLLIIGTTSRKDVLQ 180
Query: 312 EALLRSKRFDRRIFISLPDLLERQSILEKL 341
E + + F I + P++ + +LE L
Sbjct: 181 EMEMLN-AFSTTIHV--PNIATGEQLLEAL 207
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 35.4 bits (80), Expect = 0.017
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 24/117 (20%)
Query: 162 EDIAGVDEVKEEL---LEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVGKTMIAKALASE 218
++ G + +K++L LE K P ++ +LL GPPG+GKT +A +A E
Sbjct: 12 DEYIGQERLKQKLRVYLEAAKARKEPLEH----------LLLFGPPGLGKTTLAHVIAHE 61
Query: 219 ARVPFFYESGSAFSQIYVGAGAKKVHEL--FMHAKRHAPSIIFIDEIDALGKARGGH 273
V SG A +K +L + I+FIDEI L + H
Sbjct: 62 LGVNLRVTSGPAI---------EKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEH 109
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 35.4 bits (80), Expect = 0.017
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 24/117 (20%)
Query: 162 EDIAGVDEVKEEL---LEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVGKTMIAKALASE 218
++ G + +K++L LE K P ++ +LL GPPG+GKT +A +A E
Sbjct: 12 DEYIGQERLKQKLRVYLEAAKARKEPLEH----------LLLFGPPGLGKTTLAHVIAHE 61
Query: 219 ARVPFFYESGSAFSQIYVGAGAKKVHEL--FMHAKRHAPSIIFIDEIDALGKARGGH 273
V SG A +K +L + I+FIDEI L + H
Sbjct: 62 LGVNLRVTSGPAI---------EKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEH 109
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 35.4 bits (80), Expect = 0.017
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 24/117 (20%)
Query: 162 EDIAGVDEVKEEL---LEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVGKTMIAKALASE 218
++ G + +K++L LE K P ++ +LL GPPG+GKT +A +A E
Sbjct: 12 DEYIGQERLKQKLRVYLEAAKARKEPLEH----------LLLFGPPGLGKTTLAHVIAHE 61
Query: 219 ARVPFFYESGSAFSQIYVGAGAKKVHEL--FMHAKRHAPSIIFIDEIDALGKARGGH 273
V SG A +K +L + I+FIDEI L + H
Sbjct: 62 LGVNLRVTSGPAI---------EKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEH 109
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.5 bits (75), Expect = 0.063
Identities = 34/115 (29%), Positives = 44/115 (37%), Gaps = 23/115 (20%)
Query: 160 RFEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVGKTMIAKALASEA 219
R +DI G + + + L + P +L GPPGVGKT A ALA E
Sbjct: 23 RLDDIVGQEHIVKRLKHYVKTGSMPH------------LLFAGPPGVGKTTAALALAREL 70
Query: 220 RVPFFYESGSAFSQIYVG--AGAKKVHELFMHAKRHAP------SIIFIDEIDAL 266
F F ++ G + E R P IIF+DE DAL
Sbjct: 71 ---FGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADAL 122
>pdb|1E29|A Chain A, Psii Associated Cytochrome C549 From Synechocystis Sp
Length = 135
Score = 31.6 bits (70), Expect = 0.24
Identities = 12/52 (23%), Positives = 31/52 (59%)
Query: 136 KMSLESAHKNELENAFQRYDALGVRFEDIAGVDEVKEELLEVIDYLKNPKKY 187
K+ +++ + L+ + + + + D+AG + ++ +L ++++LKNPK Y
Sbjct: 31 KIFVDTCTQCHLQGKTKTNNNVSLGLADLAGAEPRRDNVLALVEFLKNPKSY 82
>pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:asn170asp Mutant
Length = 258
Score = 30.8 bits (68), Expect = 0.41
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQ-DLGIFLPKGVLLIGPPGV-GKTM 210
++I G+ +VK+ L E+ D + NP +YQ +L + PK P GKT+
Sbjct: 108 KEIGGIKKVKQRLKELGDKVTNPVRYQIELDYYSPKSKKDTSTPAAFGKTL 158
>pdb|4BLM|A Chain A, Beta-Lactamase (E.C.3.5.2.6) (Penicillinase)
pdb|4BLM|B Chain B, Beta-Lactamase (E.C.3.5.2.6) (Penicillinase)
pdb|2BLM|A Chain A, Beta-Lactamase (Penicillinase) (E.C.3.5.2.6)
pdb|2BLM|B Chain B, Beta-Lactamase (Penicillinase) (E.C.3.5.2.6)
Length = 265
Score = 30.4 bits (67), Expect = 0.53
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 131 KRLDTKMSLESAHKNELENAFQRYD---ALGVRFEDIAGVDEVKEELLEVIDYLKNPKKY 187
K +DT M+L+ EL +A RY A + + I G + +K+EL ++ D + NP+++
Sbjct: 83 KHVDTGMTLK-----ELADASLRYSDNAAQNLILKQIGGPESLKKELRKIGDEVTNPERF 137
Query: 188 Q 188
+
Sbjct: 138 E 138
>pdb|1I2W|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
pdb|1I2S|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2S|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2W|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
Length = 282
Score = 30.4 bits (67), Expect = 0.53
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 131 KRLDTKMSLESAHKNELENAFQRYD---ALGVRFEDIAGVDEVKEELLEVIDYLKNPKKY 187
K +DT M+L+ EL +A RY A + + I G + +K+EL ++ D + NP+++
Sbjct: 100 KHVDTGMTLK-----ELADASLRYSDNTAQNLILKQIGGPESLKKELRKIGDEVTNPERF 154
Query: 188 Q 188
+
Sbjct: 155 E 155
>pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With Asp 179 Replaced By
Asn (D179n)
Length = 257
Score = 30.4 bits (67), Expect = 0.53
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQ-DLGIFLPKGVLLIGPPGV-GKTM 210
++I G+ +VK+ L E+ D + NP +Y+ +L + PK P GKT+
Sbjct: 107 KEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKNTSTPAAFGKTL 157
>pdb|1MBL|A Chain A, Beta-Lactamase (E.C.3.5.2.6) Mutant With Glu 166 Replaced
By Ala (E166a)
pdb|1MBL|B Chain B, Beta-Lactamase (E.C.3.5.2.6) Mutant With Glu 166 Replaced
By Ala (E166a)
Length = 256
Score = 30.0 bits (66), Expect = 0.70
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 15/93 (16%)
Query: 131 KRLDTKMSLESAHKNELENAFQRYD---ALGVRFEDIAGVDEVKEELLEVIDYLKNPKKY 187
K +DT M+L+ EL +A RY A + + I G + +K+EL ++ D + NP++
Sbjct: 78 KHVDTGMTLK-----ELADASLRYSDNAAQNLILKQIGGPESLKKELRKIGDEVTNPER- 131
Query: 188 QDLGIFLPKGVLLIGPPGVGKTMIAKALASEAR 220
F P+ + + P T A+AL + R
Sbjct: 132 -----FAPE-LNEVNPGETQDTSTARALVTSLR 158
>pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 120k
pdb|1DJB| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 298k
Length = 257
Score = 30.0 bits (66), Expect = 0.70
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQ-DLGIFLPKGVLLIGPPGV-GKTM 210
++I G+ +VK+ L E+ D + NP +Y+ +L + PK P GKT+
Sbjct: 107 KEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTL 157
>pdb|1PIO|A Chain A, Mol_id: 1; Molecule: Beta-Lactamase; Chain: A, B; Synonym:
Penicillinase; Ec: 3.5.2.6; Engineered: Yes; Mutation:
Ins(Met 30), A238s, Del(I239)
pdb|1PIO|B Chain B, Mol_id: 1; Molecule: Beta-Lactamase; Chain: A, B; Synonym:
Penicillinase; Ec: 3.5.2.6; Engineered: Yes; Mutation:
Ins(Met 30), A238s, Del(I239)
Length = 257
Score = 30.0 bits (66), Expect = 0.70
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQ-DLGIFLPKGVLLIGPPGV-GKTM 210
++I G+ +VK+ L E+ D + NP +Y+ +L + PK P GKT+
Sbjct: 108 KEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTL 158
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 30.0 bits (66), Expect = 0.70
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 30/159 (18%)
Query: 199 LLIGPPGVGKTMIAKALAS---EARVPFFYESGS--AFSQIYVGAGAKKVHE-------- 245
+LIG PGVGKT I + LA VP + A + AGAK E
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 246 LFMHAKRHAPSIIFIDEIDAL---GKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIG 302
L AK+ I+FIDE+ + GKA G + + L E+ +G
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNM----------LKPALARGELHCVG 156
Query: 303 AT---NQMEVMDEALLRSKRFDRRIFISLPDLLERQSIL 338
AT + +++ +RF +++F++ P + + +IL
Sbjct: 157 ATTLDEYRQYIEKDAALERRF-QKVFVAEPSVEDTIAIL 194
>pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mutant, At 298k
Length = 258
Score = 30.0 bits (66), Expect = 0.70
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQ-DLGIFLPKGVLLIGPPGV-GKTM 210
++I G+ +VK+ L E+ D + NP +Y+ +L + PK P GKT+
Sbjct: 108 KEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTL 158
>pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6)
pdb|1BLC| Beta-Lactamase (E.C.3.5.2.6) Complex With Degradation Products Of
Clavulanate
pdb|1BLH| Beta-Lactamase (E.C.3.5.2.6) Complexed With
[[n-(Benzyloxycarbonyl)amino]methyl]phosphonate
Length = 257
Score = 30.0 bits (66), Expect = 0.70
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQ-DLGIFLPKGVLLIGPPGV-GKTM 210
++I G+ +VK+ L E+ D + NP +Y+ +L + PK P GKT+
Sbjct: 107 KEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTL 157
>pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphylococcus Aureus Pc1
Length = 266
Score = 30.0 bits (66), Expect = 0.70
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQ-DLGIFLPKGVLLIGPPGV-GKTM 210
++I G+ +VK+ L E+ D + NP +Y+ +L + PK P GKT+
Sbjct: 153 KEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTL 203
>pdb|1AK2| Adenylate Kinase Isoenzyme-2
pdb|2AK2| Adenylate Kinase Isoenzyme-2
Length = 233
Score = 29.6 bits (65), Expect = 0.91
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 22/151 (14%)
Query: 195 PKGV--LLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQIYVGAGAKKVHELFMHAKR 252
PKGV +L+GPPG GK A LA V + + G+ K + M A +
Sbjct: 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGK 73
Query: 253 HAPSIIFIDEIDALGKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDE 312
+ ++ I+ ++ E N L +DGF + Q E++D+
Sbjct: 74 LVSDEMVLELIE---------KNLETPPCKNGFL--LDGFPR--------TVRQAEMLDD 114
Query: 313 AL-LRSKRFDRRIFISLPDLLERQSILEKLL 342
+ R ++ D I S+PD L + I +L+
Sbjct: 115 LMEKRKEKLDSVIEFSIPDSLLIRRITGRLI 145
>pdb|1FTS| Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 29.3 bits (64), Expect = 1.2
Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 48/213 (22%)
Query: 170 VKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESG- 228
+KEE+ E++ + P + F+ +L++G GVGKT LA + F + G
Sbjct: 71 LKEEMGEILAKVDEPLNVEGKAPFV---ILMVGVNGVGKTTTIGKLARQ-----FEQQGK 122
Query: 229 ------------SAFSQIYVGAGAKKVHELFMHAKRHAPSIIFIDEIDALGKARGGHRSD 276
+A Q+ V + + H + S+IF D I A KAR
Sbjct: 123 SVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIF-DAIQA-AKAR------ 174
Query: 277 EREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLPDLLERQS 336
++ L+ + G LQN ++ E L + R +++ + P +
Sbjct: 175 ----NIDVLIADTAGRLQNKSHLM-----------EELKKIVRVMKKLDVEAP----HEV 215
Query: 337 ILEKLLENKKHALNYLKIAKICVGFSGAMLATL 369
+L ++A++ K+ VG +G L L
Sbjct: 216 MLTIDASTGQNAVSQAKLFHEAVGLTGITLTKL 248
>pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant
Length = 258
Score = 29.3 bits (64), Expect = 1.2
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQ-DLGIFLPKGVLLIGPPGV-GKTM 210
++I G+ +VK+ L E+ D + NP +Y+ +L + PK P GKT+
Sbjct: 108 KEIGGIKKVKQRLKELGDKVTNPVRYEIELQYYSPKSKKDTSTPAAFGKTL 158
>pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant
Length = 258
Score = 28.9 bits (63), Expect = 1.6
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQ-DLGIFLPKGVLLIGPPGV-GKTM 210
++I G+ +VK+ L E+ D + NP +Y+ +L + PK P GKT+
Sbjct: 108 KEIGGIKKVKQRLKELGDKVTNPVRYEIELMYYSPKSKKDTSTPAAFGKTL 158
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 28.9 bits (63), Expect = 1.6
Identities = 16/60 (26%), Positives = 29/60 (47%), Gaps = 1/60 (1%)
Query: 68 DENYFYANKGLYKTNKEAFLRVYKIPESMPIERRENLSKVSKIFLALLFFISSMLFGIFW 127
D+ F+ G YKT+ F + + I + L + +K+F+ L I++ + GI W
Sbjct: 245 DKTEFFRPNGTYKTDMGKFFLTW-YSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHW 303
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 28.9 bits (63), Expect = 1.6
Identities = 10/29 (34%), Positives = 18/29 (61%)
Query: 196 KGVLLIGPPGVGKTMIAKALASEARVPFF 224
+ + L+GP G GK+ I + LA + + F+
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 28.5 bits (62), Expect = 2.0
Identities = 66/280 (23%), Positives = 113/280 (39%), Gaps = 41/280 (14%)
Query: 169 EVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVGKTMIAKALASEAR---VPFFY 225
EV +E LE + L NP + + G G GKT + +A +EA+ Y
Sbjct: 24 EVVKEALENLGSLYNP-------------IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIY 70
Query: 226 ESGSAFSQIYVGAGAKKVHELFMHAKRHAPSIIFIDEIDAL-GKARGG----HRSDEREA 280
S F+Q V K F + + + ++ +D++ L GK R H +
Sbjct: 71 SSADDFAQAXVEHLKKGTINEFRNXYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL 129
Query: 281 TLNQLLTEMDGFLQNDEVVVIGATNQME--VMDEALLRSKRFDRRIFISLPD--LLERQS 336
Q++ D Q + V ++ E ++ E L +K + I L + L R+
Sbjct: 130 LEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKE 189
Query: 337 ILEKLLENKKHALNY---LKIAKICVGFSGAMLATLINESALNALKHQRTEIAE--SDIL 391
+++ LLEN K+ +K+ K+ GF G E + + +I E ++
Sbjct: 190 VIDYLLENTKNVREIEGKIKLIKL-KGFEGL-------ERKERKERDKLXQIVEFVANYY 241
Query: 392 EVKDKIAYGKKKPQTLDENQKELVALYQSAKALSAYWLEI 431
VK + K+ + E +K +A Y K SA +EI
Sbjct: 242 AVKVEDILSDKRNKRTSEARK--IAXYLCRKVCSASLIEI 279
>pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Benzylpenicillin
pdb|1GHM|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Cephaloridine
pdb|1GHI|A Chain A, Structure Of Beta-Lactamase Glu166asp:asn170gln Mutant
Length = 258
Score = 28.5 bits (62), Expect = 2.0
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 162 EDIAGVDEVKEELLEVIDYLKNPKKYQ-DLGIFLPKGVLLIGPPGV-GKTM 210
++I G+ +VK+ L E+ D + NP +Y +L + PK P GKT+
Sbjct: 108 KEIGGIKKVKQRLKELGDKVTNPVRYDIELQYYSPKSKKDTSTPAAFGKTL 158
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 28.1 bits (61), Expect = 2.6
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 160 RFEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVGKTMIAKAL 215
+FE++A E+ E ++V+D L K +G+F G GVGKT++ + L
Sbjct: 124 KFEELATEVEILETGIKVVDLLAPYIKGGKIGLF--------GGAGVGKTVLIQEL 171
>pdb|1EYQ|A Chain A, Chalcone Isomerase And Naringenin
pdb|1EYQ|B Chain B, Chalcone Isomerase And Naringenin
pdb|1JEP|A Chain A, Chalcone Isomerase Complexed With 4'-Hydroxyflavanone
pdb|1JEP|B Chain B, Chalcone Isomerase Complexed With 4'-Hydroxyflavanone
pdb|1FM7|A Chain A, Chalcone Isomerase Complexed With 5-Deoxyflavanone
pdb|1FM7|B Chain B, Chalcone Isomerase Complexed With 5-Deoxyflavanone
pdb|1FM8|A Chain A, Chalcone Isomerase Complexed With 5,4'-Dideoxyflavanone
pdb|1FM8|B Chain B, Chalcone Isomerase Complexed With 5,4'-Dideoxyflavanone
pdb|1EYP|A Chain A, Chalcone Isomerase
pdb|1EYP|B Chain B, Chalcone Isomerase
Length = 222
Score = 27.3 bits (59), Expect = 4.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 147 LENAFQRYDALGVRFEDIAGVD-------EVKEELLEVIDYLKN 183
+E F ++ A+GV EDIA + EELLE +D+ ++
Sbjct: 40 IEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYRD 83
>pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides Complexed
With Substrate And Nadph
pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 27.3 bits (59), Expect = 4.5
Identities = 29/133 (21%), Positives = 54/133 (39%), Gaps = 14/133 (10%)
Query: 333 ERQSILEKLLE-NKKHALNYLKIAKICVGFSGAMLATLINESALNALKHQRTEIAESDIL 391
E Q+ LE + N+ +N+ ++ + I ++A N + ++ S++L
Sbjct: 159 ELQNDLENAFDDNQLFRINHYLGKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVL 218
Query: 392 EVKDKIAYGKKKPQTLDENQKELVALYQSAKALSAYWLEIE-----FDKAPILGEFIAFN 446
V+++ Y LD Q + + WL +E DK + AFN
Sbjct: 219 GVEERAGYYDTAGALLDMIQNHTMQIVG--------WLAMEKPESFTDKDIRAAKNAAFN 270
Query: 447 ENKIHSESEIKNY 459
KI+ E+E+ Y
Sbjct: 271 ALKIYDEAEVNKY 283
>pdb|1JX0|A Chain A, Chalcone Isomerase--Y106f Mutant
pdb|1JX0|B Chain B, Chalcone Isomerase--Y106f Mutant
Length = 222
Score = 27.3 bits (59), Expect = 4.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 147 LENAFQRYDALGVRFEDIAGVD-------EVKEELLEVIDYLKN 183
+E F ++ A+GV EDIA + EELLE +D+ ++
Sbjct: 40 IEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYRD 83
>pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|C Chain C, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|D Chain D, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|E Chain E, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|F Chain F, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|G Chain G, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|H Chain H, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|I Chain I, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|J Chain J, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|K Chain K, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|L Chain L, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|M Chain M, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|N Chain N, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|O Chain O, Proteasome From Thermoplasma Acidophilum
Length = 233
Score = 27.3 bits (59), Expect = 4.5
Identities = 16/52 (30%), Positives = 26/52 (49%)
Query: 409 ENQKELVALYQSAKALSAYWLEIEFDKAPILGEFIAFNENKIHSESEIKNYI 460
EN E A+ KAL + E E KAP + N+ +I+ + E+K ++
Sbjct: 182 ENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
>pdb|1JX1|A Chain A, Chalcone Isomerase--T48a Mutant
pdb|1JX1|B Chain B, Chalcone Isomerase--T48a Mutant
pdb|1JX1|C Chain C, Chalcone Isomerase--T48a Mutant
pdb|1JX1|D Chain D, Chalcone Isomerase--T48a Mutant
pdb|1JX1|E Chain E, Chalcone Isomerase--T48a Mutant
pdb|1JX1|F Chain F, Chalcone Isomerase--T48a Mutant
Length = 222
Score = 26.9 bits (58), Expect = 5.9
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 147 LENAFQRYDALGVRFEDIAGVD-------EVKEELLEVIDYLKN 183
+E F ++ A+GV EDIA + EELLE +D+ ++
Sbjct: 40 IEGNFIKFAAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYRD 83
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 26.9 bits (58), Expect = 5.9
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 14/82 (17%)
Query: 170 VKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVGKTMIAKALASEARVPFFYES-- 227
V +EL + K PK D +P ++L+G G GKT A LA +FY+
Sbjct: 76 VYDELSNLFGGDKEPKVIPDK---IPYVIMLVGVQGTGKTTTAGKLA------YFYKKKG 126
Query: 228 ---GSAFSQIYVGAGAKKVHEL 246
G + +Y A +++ +L
Sbjct: 127 FKVGLVGADVYRPAALEQLQQL 148
>pdb|1PYP| Inorganic Pyrophosphatase (E.C.3.6.1.1)
Length = 285
Score = 26.6 bits (57), Expect = 7.7
Identities = 18/38 (47%), Positives = 21/38 (54%), Gaps = 5/38 (13%)
Query: 61 PKQTLIED-ENYFYANKGLYKTNKEAFLRVYKIPESMP 97
PK IED E YF GL + E F R+YKIP+ P
Sbjct: 165 PKLNDIEDVEKYF---PGLLRATDEWF-RIYKIPDGKP 198
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,833,172
Number of Sequences: 13198
Number of extensions: 114365
Number of successful extensions: 473
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 57
length of query: 550
length of database: 2,899,336
effective HSP length: 93
effective length of query: 457
effective length of database: 1,671,922
effective search space: 764068354
effective search space used: 764068354
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)