BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644915|ref|NP_207085.1| hypothetical protein
[Helicobacter pylori 26695]
         (172 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1I1E|A  Chain A, Crystal Structure Of Clostridium Botuli...    26  2.8
pdb|1PEX|    Collagenase-3 (Mmp-13) C-Terminal Hemopexin-Lik...    24  8.2

>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
           Complexed With Doxorubicin
 pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
 pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
           Complexed With A Trisaccharide
          Length = 1290

 Score = 25.8 bits (55), Expect = 2.8
 Identities = 14/43 (32%), Positives = 23/43 (52%)

Query: 98  LERFKKEGSLEELEFLLNYKYSDSIIRLLLEKGVKIEVFIGLK 140
           +E F K  S      +LN +Y D+ +  L   G K+EV+ G++
Sbjct: 849 IEMFNKYNSEILNNIILNLRYKDNNLIDLSGYGAKVEVYDGVE 891



>pdb|1PEX|   Collagenase-3 (Mmp-13) C-Terminal Hemopexin-Like Domain
          Length = 207

 Score = 24.3 bits (51), Expect = 8.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 158 QVWQFKDCNHLLQK 171
           QVW++ D NH++ K
Sbjct: 137 QVWRYDDTNHIMDK 150



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.325    0.141    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 906,266
Number of Sequences: 13198
Number of extensions: 33454
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 2
length of query: 172
length of database: 2,899,336
effective HSP length: 82
effective length of query: 90
effective length of database: 1,817,100
effective search space: 163539000
effective search space used: 163539000
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)