BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644919|ref|NP_207089.1| hypothetical protein
[Helicobacter pylori 26695]
(96 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ECM|B Chain B, P-Protein, Chorismate Mutase Domain Mol... 35 0.002
pdb|1FZA|B Chain B, Crystal Structure Of Fibrinogen Fragmen... 27 0.47
pdb|1LT9|B Chain B, Crystal Structure Of Recombinant Human ... 27 0.47
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis... 25 1.0
pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis... 25 1.0
pdb|1AU1|A Chain A, Human Interferon-Beta Crystal Structure... 25 1.4
pdb|1AKA|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1... 25 1.4
pdb|7AAT|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1... 25 1.4
pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovin... 25 1.8
pdb|1G0H|A Chain A, Crystal Structure Of Mj0109 Gene Produc... 24 2.3
pdb|1KMI|Z Chain Z, Crystal Structure Of An E.Coli Chemotax... 24 3.1
pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Pl... 24 3.1
pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 23 4.0
pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomeras... 23 4.0
pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 23 4.0
pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I... 23 4.0
pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I... 23 4.0
pdb|1K75|A Chain A, The L-Histidinol Dehydrogenase (Hisd) S... 23 5.2
pdb|1KAE|A Chain A, L-Histidinol Dehydrogenase (Hisd) Struc... 23 5.2
pdb|1I94|B Chain B, Crystal Structures Of The Small Ribosom... 23 6.8
pdb|1LSH|B Chain B, Lipid-Protein Interactions In Lipovitellin 23 6.8
pdb|1FJG|B Chain B, Structure Of The Thermus Thermophilus 3... 23 6.8
pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crysta... 22 8.9
>pdb|1ECM|B Chain B, P-Protein, Chorismate Mutase Domain Mol_id: 1; Molecule:
Endo-Oxabicyclic Transition State Analogue; Chain: A,
B; Domain: Chorismate Mutase Domain, Residues 1 - 109;
Engineered: Yes
pdb|1ECM|A Chain A, P-Protein, Chorismate Mutase Domain Mol_id: 1; Molecule:
Endo-Oxabicyclic Transition State Analogue; Chain: A,
B; Domain: Chorismate Mutase Domain, Residues 1 - 109;
Engineered: Yes
Length = 109
Score = 34.7 bits (78), Expect = 0.002
Identities = 25/85 (29%), Positives = 47/85 (54%), Gaps = 3/85 (3%)
Query: 12 LRAEIDALDNELSDLLDKRLEIALKI--ALIKQESPIYCPKREQEILKRL-SQRDFKHLN 68
LR +I ALD +L LL +R E+A+++ A + P+ RE+++L+RL + HL+
Sbjct: 10 LREKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLD 69
Query: 69 GEILTGFYTEVFKISRKFQENALKE 93
+T + + + S Q+ L++
Sbjct: 70 AHYITRLFQLIIEDSVLTQQALLQQ 94
>pdb|1FZA|B Chain B, Crystal Structure Of Fibrinogen Fragment D
pdb|1FZA|E Chain E, Crystal Structure Of Fibrinogen Fragment D
pdb|1FZB|B Chain B, Crystal Structure Of Crosslinked Fragment D
pdb|1FZB|E Chain E, Crystal Structure Of Crosslinked Fragment D
pdb|1FZE|B Chain B, Crystal Structure Of Fragment Double-D From Human Fibrin
pdb|1FZC|B Chain B, Crystal Structure Of Fragment Double-D From Human Fibrin
With Two Different Bound Ligands
pdb|1FZC|E Chain E, Crystal Structure Of Fragment Double-D From Human Fibrin
With Two Different Bound Ligands
pdb|1FZE|E Chain E, Crystal Structure Of Fragment Double-D From Human Fibrin
pdb|1FZG|B Chain B, Crystal Structure Of Fragment D From Human Fibrinogen
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZF|B Chain B, Crystal Structure Of Fragment Double-D From Human Fibrin
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZG|E Chain E, Crystal Structure Of Fragment D From Human Fibrinogen
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZF|E Chain E, Crystal Structure Of Fragment Double-D From Human Fibrin
With The Peptide Ligand Gly-His-Arg-Pro-Amide
Length = 328
Score = 26.6 bits (57), Expect = 0.47
Identities = 15/54 (27%), Positives = 30/54 (54%), Gaps = 4/54 (7%)
Query: 5 LDSLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESPIYCPKREQEILKR 58
L S+LENLR++I L++++S ++E + P+ K +EI+++
Sbjct: 35 LRSILENLRSKIQKLESDVS----AQMEYCRTPCTVSCNIPVVSGKECEEIIRK 84
>pdb|1LT9|B Chain B, Crystal Structure Of Recombinant Human Fibrinogen
Fragment D
pdb|1LT9|E Chain E, Crystal Structure Of Recombinant Human Fibrinogen
Fragment D
pdb|1LTJ|B Chain B, Crystal Structure Of Recombinant Human Fibrinogen
Fragment D With The Peptide Ligands
Gly-Pro-Arg-Pro-Amide And Gly- His-Arg-Pro-Amide
pdb|1LTJ|E Chain E, Crystal Structure Of Recombinant Human Fibrinogen
Fragment D With The Peptide Ligands
Gly-Pro-Arg-Pro-Amide And Gly- His-Arg-Pro-Amide
Length = 313
Score = 26.6 bits (57), Expect = 0.47
Identities = 15/54 (27%), Positives = 30/54 (54%), Gaps = 4/54 (7%)
Query: 5 LDSLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESPIYCPKREQEILKR 58
L S+LENLR++I L++++S ++E + P+ K +EI+++
Sbjct: 20 LRSILENLRSKIQKLESDVS----AQMEYCRTPCTVSCNIPVVSGKECEEIIRK 69
>pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
Complexed With Trans-Dihydroquercetin (With 30 Min
Exposure To O2)
pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
Complexed With Trans-Dihydroquercetin
Length = 356
Score = 25.4 bits (54), Expect = 1.0
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 29 KRLEIALKIALIKQESPIYCPKREQEILKRLSQRDFKHLNGEILTGFYTEVFKISRKFQE 88
+R+E K +I PK E E + + + K ++ T + K +E
Sbjct: 5 ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRE 64
Query: 89 NALKELKK 96
N ++ELKK
Sbjct: 65 NCIEELKK 72
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 25.4 bits (54), Expect = 1.0
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 29 KRLEIALKIALIKQESPIYCPKREQEILKRLSQRDFKHLNGEILTGFYTEVFKISRKFQE 88
+R+E K +I PK E E + + + K ++ T + K +E
Sbjct: 5 ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRE 64
Query: 89 NALKELKK 96
N ++ELKK
Sbjct: 65 NCIEELKK 72
>pdb|1AU1|A Chain A, Human Interferon-Beta Crystal Structure
pdb|1AU1|B Chain B, Human Interferon-Beta Crystal Structure
Length = 166
Score = 25.0 bits (53), Expect = 1.4
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 6 DSLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESPIYCPKREQEILKRLSQRDFK 65
++++ENL A + N L +L+++LE K S ++ + IL L +++
Sbjct: 81 ETIVENLLANVYHQINHLKTVLEEKLE-KEDFTRGKLMSSLHLKRYYGRILHYLKAKEYS 139
Query: 66 H-----LNGEILTGFY 76
H + EIL FY
Sbjct: 140 HCAWTIVRVEILRNFY 155
>pdb|1AKA|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Lys
258 Replaced By His (K258h) (Plp-Form)
pdb|1AKA|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Lys
258 Replaced By His (K258h) (Plp-Form)
pdb|1AKB|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Lys
258 Replaced By His (K258h) Complexed With
N-(5'-Phosphopyridoxyl)-L-Aspartate
pdb|1AKC|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) Mutant With Lys
258 Replaced By His (K258h) Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
Length = 401
Score = 25.0 bits (53), Expect = 1.4
Identities = 14/44 (31%), Positives = 20/44 (44%)
Query: 41 KQESPIYCPKREQEILKRLSQRDFKHLNGEILTGFYTEVFKISR 84
K E+ I K ++E L DF + E+ G +E FK R
Sbjct: 53 KAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGR 96
>pdb|7AAT|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) Complex With
Pyridoxal-5'-Phosphate At Ph 7.5
pdb|7AAT|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) Complex With
Pyridoxal-5'-Phosphate At Ph 7.5
pdb|1TAR|A Chain A, Aspartate Aminotransferase (Maspat) (E.C.2.6.1.1)
(Holoenzyme, Triclinic Crystal Form, Code Op2)
pdb|1TAR|B Chain B, Aspartate Aminotransferase (Maspat) (E.C.2.6.1.1)
(Holoenzyme, Triclinic Crystal Form, Code Op2)
pdb|9AAT|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) Complex With
Pyridoxal-5'-Phosphate At Ph 7.5
pdb|9AAT|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) Complex With
Pyridoxal-5'-Phosphate At Ph 7.5
pdb|1OXO|A Chain A, Aspartate Aminotransferase, H-Asp Complex, Open
Conformation
pdb|1OXO|B Chain B, Aspartate Aminotransferase, H-Asp Complex, Open
Conformation
pdb|8AAT|A Chain A, Aspartate Aminotransferase (E.C.2.6.1.1) Complex Wtih
Pyridoxal-5'-Phosphate At Ph 5.1
pdb|8AAT|B Chain B, Aspartate Aminotransferase (E.C.2.6.1.1) Complex Wtih
Pyridoxal-5'-Phosphate At Ph 5.1
pdb|1AMA| Aspartate Aminotransferase (E.C.2.6.1.1) Complex With
Alpha-Methyl Aspartate-Pyridoxal-5'-Phosphate
pdb|1MAQ| Aspartate Aminotransferase (Maspat) (E.C.2.6.1.1) Complex With
L-Glutamate-Pyridoxal-5'-Phosphate
pdb|1IVR|A Chain A, Structure Of Aspartate Aminotransferase
pdb|1MAP| Aspartate Aminotransferase (Maspat) (E.C.2.6.1.1) Complex With
L-Aspartate-Pyridoxal-5'-Phosphate
pdb|1OXP| Aspartate Aminotransferase, H-Asp Complex, Closed Conformation
pdb|1TAS|A Chain A, Aspartate Aminotransferase (Maspat) (E.C.2.6.1.1)
Complex With Alpha-Methylaspartate Complex (Monoclinic
Crystal Form, Code Cl2)
pdb|1TAS|B Chain B, Aspartate Aminotransferase (Maspat) (E.C.2.6.1.1)
Complex With Alpha-Methylaspartate Complex (Monoclinic
Crystal Form, Code Cl2)
pdb|1TAT|A Chain A, Aspartate Aminotransferase (Maspat) (E.C.2.6.1.1)
Complex With Maleate (Orthorhombic Crystal Form, Code
Cl3)
pdb|1TAT|B Chain B, Aspartate Aminotransferase (Maspat) (E.C.2.6.1.1)
Complex With Maleate (Orthorhombic Crystal Form, Code
Cl3)
Length = 401
Score = 25.0 bits (53), Expect = 1.4
Identities = 14/44 (31%), Positives = 20/44 (44%)
Query: 41 KQESPIYCPKREQEILKRLSQRDFKHLNGEILTGFYTEVFKISR 84
K E+ I K ++E L DF + E+ G +E FK R
Sbjct: 53 KAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGR 96
>pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|E Chain E, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|O Chain O, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|R Chain R, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 408
Score = 24.6 bits (52), Expect = 1.8
Identities = 10/24 (41%), Positives = 19/24 (78%)
Query: 5 LDSLLENLRAEIDALDNELSDLLD 28
L S+LENLR++I L++++S ++
Sbjct: 115 LRSILENLRSKIQKLESDVSTQME 138
>pdb|1G0H|A Chain A, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase-Fructose 1,6 Bisphosphatase
pdb|1G0H|B Chain B, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase-Fructose 1,6 Bisphosphatase
pdb|1G0I|A Chain A, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase-Fructose 1,6 Bisphosphatase
pdb|1G0I|B Chain B, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase-Fructose 1,6 Bisphosphatase
pdb|1DK4|A Chain A, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase
pdb|1DK4|B Chain B, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase
Length = 252
Score = 24.3 bits (51), Expect = 2.3
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 52 EQEILKRLSQRDFKHLNGEILTGFYTEVF-KISRKFQENALKELK 95
E+EIL ++D ++ G +G TE+F KIS ++ ALK LK
Sbjct: 15 EKEILPYFGRKDKSYVVGTSPSGDETEIFDKIS---EDIALKYLK 56
>pdb|1KMI|Z Chain Z, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 214
Score = 23.9 bits (50), Expect = 3.1
Identities = 14/61 (22%), Positives = 28/61 (44%), Gaps = 1/61 (1%)
Query: 25 DLLDKRLEIALKIALIKQESPIYCPKREQEILKRLSQRDFKHLNGEILTGFYTEVFKISR 84
DL D R E+ + P + ++LK + +DF+ L G+++ + +I R
Sbjct: 103 DLADAR-ELVTDTRQFLADVPAHTSFTNAQLLKIMMAQDFQDLTGQVIKRMMDVIQEIER 161
Query: 85 K 85
+
Sbjct: 162 Q 162
>pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
Length = 183
Score = 23.9 bits (50), Expect = 3.1
Identities = 11/27 (40%), Positives = 15/27 (54%)
Query: 55 ILKRLSQRDFKHLNGEILTGFYTEVFK 81
I R+ Q +F HLNG + T+V K
Sbjct: 127 IHSRIFQHEFDHLNGTLFIDKXTQVDK 153
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 23.5 bits (49), Expect = 4.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 3 KNLDSLLENLRAEIDALDNELSDLLDKRLE 32
KNL +EN + E D D + +L+K L+
Sbjct: 348 KNLQLFMENKQPEDDLFDRLNTGILNKHLQ 377
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 23.5 bits (49), Expect = 4.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 3 KNLDSLLENLRAEIDALDNELSDLLDKRLE 32
KNL +EN + E D D + +L+K L+
Sbjct: 347 KNLQLFMENKQPEDDLFDRLNTGILNKHLQ 376
>pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex
Length = 592
Score = 23.5 bits (49), Expect = 4.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 3 KNLDSLLENLRAEIDALDNELSDLLDKRLE 32
KNL +EN + E D D + +L+K L+
Sbjct: 376 KNLQLFMENKQPEDDLFDRLNTGILNKHLQ 405
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 23.5 bits (49), Expect = 4.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 3 KNLDSLLENLRAEIDALDNELSDLLDKRLE 32
KNL +EN + E D D + +L+K L+
Sbjct: 375 KNLQLFMENKQPEDDLFDRLNTGILNKHLQ 404
>pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I In Non-Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 23.5 bits (49), Expect = 4.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 3 KNLDSLLENLRAEIDALDNELSDLLDKRLE 32
KNL +EN + E D D + +L+K L+
Sbjct: 375 KNLQLFMENKQPEDDLFDRLNTGILNKHLQ 404
>pdb|1K75|A Chain A, The L-Histidinol Dehydrogenase (Hisd) Structure
Implicates Domain Swapping And Gene Duplication.
pdb|1K75|B Chain B, The L-Histidinol Dehydrogenase (Hisd) Structure
Implicates Domain Swapping And Gene Duplication
Length = 434
Score = 23.1 bits (48), Expect = 5.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 3 KNLDSLLENLRAEIDALDNELSDLLDKRLEIALKIA 38
+ ++ +L+N++A D E S DK ALK++
Sbjct: 34 RTVNDILDNVKARGDEALREYSAKFDKTTVTALKVS 69
>pdb|1KAE|A Chain A, L-Histidinol Dehydrogenase (Hisd) Structure Complexed
With L-Histidinol (Substrate), Zinc And Nad (Cofactor)
pdb|1KAE|B Chain B, L-Histidinol Dehydrogenase (Hisd) Structure Complexed
With L-Histidinol (Substrate), Zinc And Nad (Cofactor)
pdb|1KAH|A Chain A, L-Histidinol Dehydrogenase (Hisd) Structure Complexed
With L-Histidine (Product), Zn And Nad (Cofactor)
pdb|1KAH|B Chain B, L-Histidinol Dehydrogenase (Hisd) Structure Complexed
With L-Histidine (Product), Zn And Nad (Cofactor)
pdb|1KAR|A Chain A, L-Histidinol Dehydrogenase (Hisd) Structure Complexed
With Histamine (Inhibitor), Zinc And Nad (Cofactor)
pdb|1KAR|B Chain B, L-Histidinol Dehydrogenase (Hisd) Structure Complexed
With Histamine (Inhibitor), Zinc And Nad (Cofactor)
Length = 434
Score = 23.1 bits (48), Expect = 5.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 3 KNLDSLLENLRAEIDALDNELSDLLDKRLEIALKIA 38
+ ++ +L+N++A D E S DK ALK++
Sbjct: 34 RTVNDILDNVKARGDEALREYSAKFDKTTVTALKVS 69
>pdb|1I94|B Chain B, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I96|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|1I95|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
Length = 255
Score = 22.7 bits (47), Expect = 6.8
Identities = 15/49 (30%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
Query: 49 PKREQEILKRLSQRDFKHLNG-EILTGFYTEVFKISRKFQENALKELKK 96
PK+EQ LK +R K+L+G +L +F + + A++E +K
Sbjct: 130 PKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARK 178
>pdb|1LSH|B Chain B, Lipid-Protein Interactions In Lipovitellin
Length = 319
Score = 22.7 bits (47), Expect = 6.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 36 KIALIKQESPIYCPKREQEILKRLSQR 62
K AL++ +P+ K E EI+ + +Q+
Sbjct: 161 KNALLENGAPVIASKLEMEIMPKANQK 187
>pdb|1FJG|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin And Paromomycin
pdb|1J5E|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1IBL|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1HR0|B Chain B, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNZ|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1IBM|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1IBK|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1HNW|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1JGQ|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1GIX|E Chain E, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1JGO|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
Length = 256
Score = 22.7 bits (47), Expect = 6.8
Identities = 15/49 (30%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
Query: 49 PKREQEILKRLSQRDFKHLNG-EILTGFYTEVFKISRKFQENALKELKK 96
PK+EQ LK +R K+L+G +L +F + + A++E +K
Sbjct: 131 PKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARK 179
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 22.3 bits (46), Expect = 8.9
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 3 KNL---DSLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESPIYCP 49
KNL D+ L +AE+ AL ++ D L+K E K+ L + P Y P
Sbjct: 181 KNLNEDDTSLVFSKAELGALPDDFIDSLEKTDEDKYKVTL---KYPHYFP 227
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.137 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,214
Number of Sequences: 13198
Number of extensions: 15161
Number of successful extensions: 71
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 26
length of query: 96
length of database: 2,899,336
effective HSP length: 72
effective length of query: 24
effective length of database: 1,949,080
effective search space: 46777920
effective search space used: 46777920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)