BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644920|ref|NP_207090.1| hypothetical protein
[Helicobacter pylori 26695]
(290 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G8X|A Chain A, Structure Of A Genetically Engineered M... 30 0.25
pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Doma... 30 0.25
pdb|1MMG| X-Ray Structures Of The Mgadp, Mgatpgammas, And... 30 0.25
pdb|1LVK| X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-... 30 0.25
pdb|1MMA| X-Ray Structures Of The Mgadp, Mgatpgammas, And... 30 0.25
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain... 30 0.25
pdb|1MMD| Truncated Head Of Myosin From Dictyostelium Dis... 30 0.25
pdb|1MMN| X-Ray Structures Of The Mgadp, Mgatpgammas, And... 30 0.25
pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpa... 30 0.25
pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna... 27 2.1
pdb|1EM2|A Chain A, Star-Related Lipid Transport Domain Of ... 27 2.7
pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat... 26 4.7
pdb|1FBN|A Chain A, Crystal Structure Of A Fibrillarin Homo... 26 6.1
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 30.4 bits (67), Expect = 0.25
Identities = 19/74 (25%), Positives = 35/74 (46%)
Query: 66 PIGKNAFECVKELLKLEKNLRFHSLTLEQKDDLKDNFVGVFDFTYNRDRSDYVYSIEELI 125
PI + E + EL L + FH+L + DL + G+F N + +Y+ E +
Sbjct: 82 PIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVD 141
Query: 126 ALKGKKYHKKKNHL 139
KG++ ++ H+
Sbjct: 142 IFKGRRRNEVAPHI 155
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 30.4 bits (67), Expect = 0.25
Identities = 19/74 (25%), Positives = 35/74 (46%)
Query: 66 PIGKNAFECVKELLKLEKNLRFHSLTLEQKDDLKDNFVGVFDFTYNRDRSDYVYSIEELI 125
PI + E + EL L + FH+L + DL + G+F N + +Y+ E +
Sbjct: 82 PIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVD 141
Query: 126 ALKGKKYHKKKNHL 139
KG++ ++ H+
Sbjct: 142 IFKGRRRNEVAPHI 155
>pdb|1MMG| X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes
Of The Dictyostelium Discoideum Myosin Motor Domain
Length = 762
Score = 30.4 bits (67), Expect = 0.25
Identities = 19/74 (25%), Positives = 35/74 (46%)
Query: 66 PIGKNAFECVKELLKLEKNLRFHSLTLEQKDDLKDNFVGVFDFTYNRDRSDYVYSIEELI 125
PI + E + EL L + FH+L + DL + G+F N + +Y+ E +
Sbjct: 82 PIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVD 141
Query: 126 ALKGKKYHKKKNHL 139
KG++ ++ H+
Sbjct: 142 IFKGRRRNEVAPHI 155
>pdb|1LVK| X-Ray Crystal Structure Of The Mg (Dot)
2'(3')-O-(N-Methylanthraniloyl) Nucleotide Bound To
Dictyostelium Discoideum Myosin Motor Domain
Length = 762
Score = 30.4 bits (67), Expect = 0.25
Identities = 19/74 (25%), Positives = 35/74 (46%)
Query: 66 PIGKNAFECVKELLKLEKNLRFHSLTLEQKDDLKDNFVGVFDFTYNRDRSDYVYSIEELI 125
PI + E + EL L + FH+L + DL + G+F N + +Y+ E +
Sbjct: 82 PIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVD 141
Query: 126 ALKGKKYHKKKNHL 139
KG++ ++ H+
Sbjct: 142 IFKGRRRNEVAPHI 155
>pdb|1MMA| X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes
Of The Dictyostelium Discoideum Myosin Motor Domain
Length = 762
Score = 30.4 bits (67), Expect = 0.25
Identities = 19/74 (25%), Positives = 35/74 (46%)
Query: 66 PIGKNAFECVKELLKLEKNLRFHSLTLEQKDDLKDNFVGVFDFTYNRDRSDYVYSIEELI 125
PI + E + EL L + FH+L + DL + G+F N + +Y+ E +
Sbjct: 82 PIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVD 141
Query: 126 ALKGKKYHKKKNHL 139
KG++ ++ H+
Sbjct: 142 IFKGRRRNEVAPHI 155
>pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride.
pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride
Length = 761
Score = 30.4 bits (67), Expect = 0.25
Identities = 19/74 (25%), Positives = 35/74 (46%)
Query: 66 PIGKNAFECVKELLKLEKNLRFHSLTLEQKDDLKDNFVGVFDFTYNRDRSDYVYSIEELI 125
PI + E + EL L + FH+L + DL + G+F N + +Y+ E +
Sbjct: 82 PIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVD 141
Query: 126 ALKGKKYHKKKNHL 139
KG++ ++ H+
Sbjct: 142 IFKGRRRNEVAPHI 155
>pdb|1MMD| Truncated Head Of Myosin From Dictyostelium Discoideum Complexed
With Mgadp-Bef3
pdb|1MNE| Truncated Head Of Myosin From Dictyostelium Discoideum Complexed
With Mg-Pyrophosphate
pdb|1VOM| Complex Between Dictyostelium Myosin And Mgadp And Vanadate At
1.9a Resolution
pdb|1MND| Truncated Head Of Myosin From Dictyostelium Discoideum Complexed
With Mgadp-Alf4
Length = 762
Score = 30.4 bits (67), Expect = 0.25
Identities = 19/74 (25%), Positives = 35/74 (46%)
Query: 66 PIGKNAFECVKELLKLEKNLRFHSLTLEQKDDLKDNFVGVFDFTYNRDRSDYVYSIEELI 125
PI + E + EL L + FH+L + DL + G+F N + +Y+ E +
Sbjct: 82 PIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVD 141
Query: 126 ALKGKKYHKKKNHL 139
KG++ ++ H+
Sbjct: 142 IFKGRRRNEVAPHI 155
>pdb|1MMN| X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes
Of The Dictyostelium Discoideum Myosin Motor Domain
Length = 762
Score = 30.4 bits (67), Expect = 0.25
Identities = 19/74 (25%), Positives = 35/74 (46%)
Query: 66 PIGKNAFECVKELLKLEKNLRFHSLTLEQKDDLKDNFVGVFDFTYNRDRSDYVYSIEELI 125
PI + E + EL L + FH+L + DL + G+F N + +Y+ E +
Sbjct: 82 PIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVD 141
Query: 126 ALKGKKYHKKKNHL 139
KG++ ++ H+
Sbjct: 142 IFKGRRRNEVAPHI 155
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 30.4 bits (67), Expect = 0.25
Identities = 19/74 (25%), Positives = 35/74 (46%)
Query: 66 PIGKNAFECVKELLKLEKNLRFHSLTLEQKDDLKDNFVGVFDFTYNRDRSDYVYSIEELI 125
PI + E + EL L + FH+L + DL + G+F N + +Y+ E +
Sbjct: 93 PIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVD 152
Query: 126 ALKGKKYHKKKNHL 139
KG++ ++ H+
Sbjct: 153 IFKGRRRNEVAPHI 166
>pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna Glycosylase
Length = 221
Score = 27.3 bits (59), Expect = 2.1
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 33 FLWQHARLIQVAVIRDCLVIQTTYENQKPFYFYPIGKNAFECVKELLK-----LEKNLRF 87
F W+H R V +I + L+ +TT + K Y K ++C +++LK + K+++
Sbjct: 27 FPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVK--YKCFEDILKTPKSEIAKDIKE 84
Query: 88 HSLTLEQKDDLKD 100
L+ ++ + LK+
Sbjct: 85 IGLSNQRAEQLKE 97
>pdb|1EM2|A Chain A, Star-Related Lipid Transport Domain Of Mln64
Length = 229
Score = 26.9 bits (58), Expect = 2.7
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 28/96 (29%)
Query: 68 GKNAFECVKELLKLEKNLRFHSLTLEQKDDLKDNFVGVFDFTYNRDRSDYVYSIEELIAL 127
GK A V ++L E+N +F N + D VY+IE
Sbjct: 27 GKEATAVVDQILAQEENWKFEK---------------------NNEYGDTVYTIEV---- 61
Query: 128 KGKKYHKKKNHLNQFLTNHANFVYEKISPQNKKEVL 163
+H K L FL A VY+++ Q ++ VL
Sbjct: 62 ---PFHGKTFILKTFLPCPAELVYQEVILQPERXVL 94
>pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat3b Homodimer Bound
To Dna
Length = 722
Score = 26.2 bits (56), Expect = 4.7
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 11/111 (9%)
Query: 34 LWQHARLIQVAVIRDCLVIQTTYENQKPFYFYPIGKNAFECVKELLKLEKNLRFHSLTLE 93
LW+ +RL+Q A T Q +P E + L + +++R LE
Sbjct: 109 LWEESRLLQTAA---------TAAQQGGQANHPTAAVVTEKQQMLEQHLQDVRKRVQDLE 159
Query: 94 QKDDLKDNFVGVFDFTYNRDRSDYVYSIEELIALKGKKYHKKKNHLNQFLT 144
QK + +N FDF Y +S +++L +K L Q LT
Sbjct: 160 QKMKVVENLQDDFDFNYKTLKSQ--GDMQDLNGNNQSVTRQKMQQLEQMLT 208
>pdb|1FBN|A Chain A, Crystal Structure Of A Fibrillarin Homologue From
Methanococcus Jannaschii, A Hyperthermophile, At 1.6 A
Length = 230
Score = 25.8 bits (55), Expect = 6.1
Identities = 15/61 (24%), Positives = 30/61 (48%), Gaps = 3/61 (4%)
Query: 112 RDRSDYVYSIEELIALKGKKYHKKKNHLNQFLTNHANFVYEKISPQNKKEVLEASQAWFL 171
R+ D E +I + G +K + + N + + +YE ++ N+ E+L + WFL
Sbjct: 112 RELLDACAERENIIPILGDA-NKPQEYAN--IVEKVDVIYEDVAQPNQAEILIKNAKWFL 168
Query: 172 E 172
+
Sbjct: 169 K 169
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.137 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,597,737
Number of Sequences: 13198
Number of extensions: 64878
Number of successful extensions: 188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 16
length of query: 290
length of database: 2,899,336
effective HSP length: 87
effective length of query: 203
effective length of database: 1,751,110
effective search space: 355475330
effective search space used: 355475330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)