BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644921|ref|NP_207091.1| para-aminobenzoate
synthetase (pabB) [Helicobacter pylori 26695]
(559 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K0E|A Chain A, The Crystal Structure Of Aminodeoxychor... 175 1e-44
pdb|1QDL|A Chain A, The Crystal Structure Of Anthranilate S... 125 1e-29
pdb|1I7Q|A Chain A, Anthranilate Synthase From S. Marcescen... 83 7e-17
pdb|1I1Q|A Chain A, Structure Of The Cooperative Allosteric... 79 2e-15
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Int... 27 4.6
pdb|1TKB|A Chain A, Transketolase (E.C.2.2.1.1) Complexed W... 27 4.6
pdb|1AY0|A Chain A, Identification Of Catalytically Importa... 27 4.6
pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) Fr... 27 7.8
pdb|1J5X|A Chain A, Crystal Structure Of Conserved Hypothet... 27 7.8
pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamo... 27 7.8
pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino... 27 7.8
>pdb|1K0E|A Chain A, The Crystal Structure Of Aminodeoxychorismate Synthase
From Formate Grown Crystals
pdb|1K0G|A Chain A, The Crystal Structure Of Aminodeoxychorismate Synthase
From Phosphate Grown Crystals
pdb|1K0G|B Chain B, The Crystal Structure Of Aminodeoxychorismate Synthase
From Phosphate Grown Crystals
pdb|1K0E|B Chain B, The Crystal Structure Of Aminodeoxychorismate Synthase
From Formate Grown Crystals
Length = 453
Score = 175 bits (443), Expect = 1e-44
Identities = 104/295 (35%), Positives = 169/295 (57%), Gaps = 9/295 (3%)
Query: 68 FLERKKYSLEPLKEHAFYPKIHSSLDQKTYFKQFKAVKERLKNGDTYQVNLTMDLFLDTK 127
+LE +++S P ++ S++ ++ Y ++F+ V+E L +GD YQVNL
Sbjct: 166 WLESQQFS--PQEDFTLTSDWQSNMTREQYGEKFRQVQEYLHSGDCYQVNLAQRFHATYS 223
Query: 128 AKPKRVFKEVVHNQNTPFKAFIENEFGSVLSFSPELFFELEFLDTAIKIITKPMKGTIAR 187
+ F ++ PF AF+ E G++LS SPE F L +I T+P+KGT+ R
Sbjct: 224 GDEWQAFLQLNQANRAPFSAFLRLEQGAILSLSPERFI----LCDNSEIQTRPIKGTLPR 279
Query: 188 SKNPLIDEKNRLFLQNDDKNRSENVMIVDLLRNDLSRLALKNSVKVNQLFEIISLPSVYQ 247
+P D K + L N K+R+EN+MIVDL+RND+ R+A+ SVKV +LF + P+V+
Sbjct: 280 LPDPQEDSKQAVKLANSAKDRAENLMIVDLMRNDIGRVAVAGSVKVPELFVVEPFPAVHH 339
Query: 248 MISEIEAKLPLKTSLFEIFKALFPCGSVTGCPKIKTMQIIESLEKRPRGVYCGAIGMVEE 307
++S I A+LP + ++ +A FP GS+TG PK++ M+II+ LE + R +CG+IG +
Sbjct: 340 LVSTITAQLPEQLHASDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWCGSIGYLSF 399
Query: 308 KKAL-FSVPIRTLEKRVHENFLHLGVGSGVTYKSKAPKEYEESFLKSFFVMPKIE 361
+ S+ IRTL + F G G+ S+ EY+E+F K ++ ++E
Sbjct: 400 CGNMDTSITIRTLTAINGQIF--CSAGGGIVADSQEEAEYQETFDKVNRILKQLE 452
>pdb|1QDL|A Chain A, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 422
Score = 125 bits (314), Expect = 1e-29
Identities = 78/260 (30%), Positives = 139/260 (53%), Gaps = 7/260 (2%)
Query: 91 SLDQKTYFKQFKAVKERLKNGDTYQVNLTMDLFLDTKAKPKRVFKEVVHNQNTPFKAFIE 150
SL++ +Y + E +++G +QV L+ P R++ + +P+ +++
Sbjct: 155 SLNKNSYERIVSESLEYIRSGYIFQVVLSRFYRYIFSGDPLRIYYNLRRINPSPYMFYLK 214
Query: 151 NEFGSVLSFSPELFFELEFLDTAIKIITKPMKGTIARSKNPLIDEKNRLFLQNDDKNRSE 210
+ ++ SPEL F ++ D ++ T P+ GT R + D K L L N +K+++E
Sbjct: 215 FDEKYLIGSSPELLFRVQ--DNIVE--TYPIAGTRPRGADQEEDLKLELELMNSEKDKAE 270
Query: 211 NVMIVDLLRNDLSRLALKNSVKVNQLFEIISLPSVYQMISEIEAKLPLKTSLFEIFKALF 270
++M+VDL RNDL ++ + +VKV +L + V ++S++ L K + + A F
Sbjct: 271 HLMLVDLARNDLGKVCVPGTVKVPELMYVEKYSHVQHIVSKVIGTLKKKYNALNVLSATF 330
Query: 271 PCGSVTGCPKIKTMQIIESLEKRPRGVYCGAIGMVE-EKKALFSVPIRTLEKRVHENFLH 329
P G+V+G PK M IIE+LE+ RG Y GA+G + + A F++ IRT +++ L
Sbjct: 331 PAGTVSGAPKPMAMNIIETLEEYKRGPYAGAVGFISADGNAEFAIAIRT--AFLNKELLR 388
Query: 330 LGVGSGVTYKSKAPKEYEES 349
+ G+G+ Y S EY E+
Sbjct: 389 IHAGAGIVYDSNPESEYFET 408
>pdb|1I7Q|A Chain A, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|C Chain C, Anthranilate Synthase From S. Marcescens
pdb|1I7S|A Chain A, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|C Chain C, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 519
Score = 83.2 bits (204), Expect = 7e-17
Identities = 66/264 (25%), Positives = 128/264 (48%), Gaps = 12/264 (4%)
Query: 104 VKERLKNGDTYQVNLTMDLFLDTKAKPKRVFKEVVHNQNTPFKAFIENEFGSVLSFSPEL 163
++E ++ G+ +QV + L A P ++ + N +P+ F++++ ++ SPE
Sbjct: 251 LQEAIRQGEIFQVVPSRRFSLPCPA-PLGPYQTLKDNNPSPYMFFMQDDDFTLFGASPES 309
Query: 164 FFELEFLDTAIKIITKPMKGTIARSKNPL------IDEKNRLFLQNDDKNRSENVMIVDL 217
+ + + I+I P+ GT R + +D + L ++ D K +E++M+VDL
Sbjct: 310 ALKYDAGNRQIEIY--PIAGTRPRGRRADGSLDLDLDSRIELEMRTDHKELAEHLMLVDL 367
Query: 218 LRNDLSRLALKNSVKVNQLFEIISLPSVYQMISEIEAKLPLKTSLFEIFKALFPCGSVTG 277
RNDL+R+ S V L ++ V ++S + L + ++A G+++G
Sbjct: 368 ARNDLARICQAGSRYVADLTKVDRYSFVMHLVSRVVGTLRADLDVLHAYQACMNMGTLSG 427
Query: 278 CPKIKTMQIIESLEKRPRGVYCGAIGMVEEKKALFS-VPIRTLEKRVHENFLHLGVGSGV 336
PK++ MQ+I +L RG Y G +G + L + + IR+ V + + G+GV
Sbjct: 428 APKVRAMQLIAALRSTRRGSYGGRVGYFTAVRNLDTCIVIRS--AYVEDGHRTVQAGAGV 485
Query: 337 TYKSKAPKEYEESFLKSFFVMPKI 360
S +E +E+ K+ V+ I
Sbjct: 486 VQDSIPEREADETRNKARAVLRAI 509
>pdb|1I1Q|A Chain A, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 520
Score = 78.6 bits (192), Expect = 2e-15
Identities = 64/266 (24%), Positives = 124/266 (46%), Gaps = 12/266 (4%)
Query: 102 KAVKERLKNGDTYQVNLTMDLFLDTKAKPKRVFKEVVHNQNTPFKAFIENEFGSVLSFSP 161
+ +++ ++ G+ +QV + L + P + + + +P+ F+++ ++ SP
Sbjct: 250 RQLQKAIRAGEIFQVVPSRRFSLPCPS-PLAAYYVLKKSNPSPYMFFMQDNDFTLFGASP 308
Query: 162 ELFFELEFLDTAIKIITKPMKGTIARSKNPL------IDEKNRLFLQNDDKNRSENVMIV 215
E + + I+I P+ GT R + +D + L ++ D K SE++M+V
Sbjct: 309 ESSLKYDAASRQIEIY--PIAGTRPRGRRADGTLDRDLDSRIELDMRTDHKELSEHLMLV 366
Query: 216 DLLRNDLSRLALKNSVKVNQLFEIISLPSVYQMISEIEAKLPLKTSLFEIFKALFPCGSV 275
DL RNDL+R+ S V L ++ V ++S + +L ++A G++
Sbjct: 367 DLARNDLARICTPGSRYVADLTKVDRYSYVMHLVSRVVGELRHDLDALHAYRACMNMGTL 426
Query: 276 TGCPKIKTMQIIESLEKRPRGVYCGAIGMVEEKKALFS-VPIRTLEKRVHENFLHLGVGS 334
+G PK++ MQ+I E + RG Y GA+G L + + IR+ V + G+
Sbjct: 427 SGAPKVRAMQLIADAEGQRRGSYGGAVGYFTAHGDLDTCIVIRS--ALVENGIATVQAGA 484
Query: 335 GVTYKSKAPKEYEESFLKSFFVMPKI 360
G+ S E +E+ K+ V+ I
Sbjct: 485 GIVLDSVPQSEADETRNKARAVLRAI 510
>pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
pdb|1TRK|A Chain A, Transketolase (E.C.2.2.1.1)
pdb|1TRK|B Chain B, Transketolase (E.C.2.2.1.1)
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-Phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-Phosphate
Length = 680
Score = 27.3 bits (59), Expect = 4.6
Identities = 15/35 (42%), Positives = 20/35 (56%), Gaps = 1/35 (2%)
Query: 15 LTATNLNELKNALDFISQNRGNGYFVG-YLLYEAR 48
LT +NL K ALDF + G+G + G Y+ Y R
Sbjct: 383 LTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIR 417
>pdb|1TKB|A Chain A, Transketolase (E.C.2.2.1.1) Complexed With
1'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKB|B Chain B, Transketolase (E.C.2.2.1.1) Complexed With
1'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKA|A Chain A, Transketolase (E.C.2.2.1.1) Complexed With
3'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKA|B Chain B, Transketolase (E.C.2.2.1.1) Complexed With
3'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKC|A Chain A, Transketolase (E.C.2.2.1.1) Complexed With
6'-Methyl-Thiamin Diphosphate And Calcium
pdb|1TKC|B Chain B, Transketolase (E.C.2.2.1.1) Complexed With
6'-Methyl-Thiamin Diphosphate And Calcium
Length = 678
Score = 27.3 bits (59), Expect = 4.6
Identities = 15/35 (42%), Positives = 20/35 (56%), Gaps = 1/35 (2%)
Query: 15 LTATNLNELKNALDFISQNRGNGYFVG-YLLYEAR 48
LT +NL K ALDF + G+G + G Y+ Y R
Sbjct: 381 LTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIR 415
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 27.3 bits (59), Expect = 4.6
Identities = 15/35 (42%), Positives = 20/35 (56%), Gaps = 1/35 (2%)
Query: 15 LTATNLNELKNALDFISQNRGNGYFVG-YLLYEAR 48
LT +NL K ALDF + G+G + G Y+ Y R
Sbjct: 383 LTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIR 417
>pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|B Chain B, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|C Chain C, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|D Chain D, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
Length = 458
Score = 26.6 bits (57), Expect = 7.8
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 241 SLPSVYQMISEIEAKLPLKTSLFEIFKALFPCGSVTGCPKIKTMQIIESLEK-------R 293
S+P ++ +S+ E LFEIF+ + CGSV + II++L+K +
Sbjct: 153 SVPGMFDAVSDGE--------LFEIFQEIAACGSVI-VVHAENETIIQALQKQIKAAGGK 203
Query: 294 PRGVYCGAIGMVEEKKALFSVPIRTLEKRVHENFLHLGVGSGVTYKSKAPKEYEESFLKS 353
Y + + +E +A+ + E LH+ GV +A E ++ +S
Sbjct: 204 DMAAYEASQPVFQENEAIQRALLLQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHCES 263
>pdb|1J5X|A Chain A, Crystal Structure Of Conserved Hypothetical Protein
(Tm0813) From Thermotoga Maritima At 1.8 A Resolution
Length = 342
Score = 26.6 bits (57), Expect = 7.8
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 169 FLDTAIKIITKPMK-GTIARSKNPLIDEKNRLFLQNDDKNRSENVMIVDLLRNDLSRLAL 227
+ + +KI TK + G +A K P ++E+ FL + N +E ++ D+L+ R
Sbjct: 73 YFERVLKIRTKAIPAGEVAFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKKRNHRTIG 132
Query: 228 KNSVKVNQLFEIISLPSVYQMISE 251
+ ++L + LP V+ + E
Sbjct: 133 ITIEEESRLAKESDLPLVFPVREE 156
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 26.6 bits (57), Expect = 7.8
Identities = 16/60 (26%), Positives = 29/60 (47%), Gaps = 11/60 (18%)
Query: 396 FNFKYDENLLDFELEKEGVLRVLLNKKGKLI-----------KEYKTLEPLKSLEIRLSE 444
FN Y E +++ +++ +L++K GK++ KEY+ P + LE R E
Sbjct: 92 FNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFE 151
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 26.6 bits (57), Expect = 7.8
Identities = 16/60 (26%), Positives = 29/60 (47%), Gaps = 11/60 (18%)
Query: 396 FNFKYDENLLDFELEKEGVLRVLLNKKGKLI-----------KEYKTLEPLKSLEIRLSE 444
FN Y E +++ +++ +L++K GK++ KEY+ P + LE R E
Sbjct: 91 FNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFE 150
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.139 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,040,833
Number of Sequences: 13198
Number of extensions: 127638
Number of successful extensions: 417
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 11
length of query: 559
length of database: 2,899,336
effective HSP length: 93
effective length of query: 466
effective length of database: 1,671,922
effective search space: 779115652
effective search space used: 779115652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)