BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644925|ref|NP_207095.1| ribosomal protein L27
(rpl27) [Helicobacter pylori 26695]
(88 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LNR|U Chain U, Crystal Structure Of The Large Ribosoma... 101 1e-23
pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamat... 25 1.9
pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride C... 23 7.2
pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant 22 9.4
pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant 22 9.4
pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex O... 22 9.4
pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:a... 22 9.4
pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Del... 22 9.4
pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With As... 22 9.4
pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mut... 22 9.4
pdb|1PIO|A Chain A, Mol_id: 1; Molecule: Beta-Lactamase; Ch... 22 9.4
pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mut... 22 9.4
pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6) >gi|493890|pdb|1BL... 22 9.4
pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphyl... 22 9.4
>pdb|1LNR|U Chain U, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 91
Score = 101 bits (252), Expect = 1e-23
Identities = 49/81 (60%), Positives = 61/81 (74%)
Query: 1 MAHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKMHPGNNVGMGKDHTLY 60
MAHKKG GS++N RDS + LGVKKFG E V+AGNI+VRQRGTK G VGMG+DHTL+
Sbjct: 1 MAHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLF 60
Query: 61 ALIDGVVKFEHKDRNRKKVSV 81
AL DG V F +K + + +S+
Sbjct: 61 ALSDGKVVFINKGKGARFISI 81
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 24.6 bits (52), Expect = 1.9
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 9 STQNNRDSAGRRLG---VKKFGSEFVRAGNIIVRQRGT 43
+ +N + + G RL +KFG ++ G+I +R RGT
Sbjct: 1234 NARNTQRAIGTRLSSMVTRKFGMFGLQPGHITIRLRGT 1271
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|B Chain B, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|C Chain C, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|D Chain D, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|E Chain E, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|F Chain F, Crystal Structure Of The Clc Chloride Channel From E. Coli
Length = 473
Score = 22.7 bits (47), Expect = 7.2
Identities = 11/34 (32%), Positives = 17/34 (49%)
Query: 19 RRLGVKKFGSEFVRAGNIIVRQRGTKMHPGNNVG 52
R L VK FG G +++ + G + G N+G
Sbjct: 126 RVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
>pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant
Length = 258
Score = 22.3 bits (46), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 53 MGKDHTLYALIDGVVKFEHKDRNRKKVSVV 82
+GKD TL ALI+ + + N K + +
Sbjct: 81 VGKDITLKALIEASMTYSDNTANNKIIKEI 110
>pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant
Length = 258
Score = 22.3 bits (46), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 53 MGKDHTLYALIDGVVKFEHKDRNRKKVSVV 82
+GKD TL ALI+ + + N K + +
Sbjct: 81 VGKDITLKALIEASMTYSDNTANNKIIKEI 110
>pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Benzylpenicillin
pdb|1GHM|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Cephaloridine
pdb|1GHI|A Chain A, Structure Of Beta-Lactamase Glu166asp:asn170gln Mutant
Length = 258
Score = 22.3 bits (46), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 53 MGKDHTLYALIDGVVKFEHKDRNRKKVSVV 82
+GKD TL ALI+ + + N K + +
Sbjct: 81 VGKDITLKALIEASMTYSDNTANNKIIKEI 110
>pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:asn170asp Mutant
Length = 258
Score = 22.3 bits (46), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 53 MGKDHTLYALIDGVVKFEHKDRNRKKVSVV 82
+GKD TL ALI+ + + N K + +
Sbjct: 81 VGKDITLKALIEASMTYSDNTANNKIIKEI 110
>pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
pdb|1OME|B Chain B, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
Length = 242
Score = 22.3 bits (46), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 53 MGKDHTLYALIDGVVKFEHKDRNRKKVSVV 82
+GKD TL ALI+ + + N K + +
Sbjct: 81 VGKDITLKALIEASMTYSDNTANNKIIKEI 110
>pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With Asp 179 Replaced By
Asn (D179n)
Length = 257
Score = 22.3 bits (46), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 53 MGKDHTLYALIDGVVKFEHKDRNRKKVSVV 82
+GKD TL ALI+ + + N K + +
Sbjct: 80 VGKDITLKALIEASMTYSDNTANNKIIKEI 109
>pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 120k
pdb|1DJB| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 298k
Length = 257
Score = 22.3 bits (46), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 53 MGKDHTLYALIDGVVKFEHKDRNRKKVSVV 82
+GKD TL ALI+ + + N K + +
Sbjct: 80 VGKDITLKALIEASMTYSDNTANNKIIKEI 109
>pdb|1PIO|A Chain A, Mol_id: 1; Molecule: Beta-Lactamase; Chain: A, B; Synonym:
Penicillinase; Ec: 3.5.2.6; Engineered: Yes; Mutation:
Ins(Met 30), A238s, Del(I239)
pdb|1PIO|B Chain B, Mol_id: 1; Molecule: Beta-Lactamase; Chain: A, B; Synonym:
Penicillinase; Ec: 3.5.2.6; Engineered: Yes; Mutation:
Ins(Met 30), A238s, Del(I239)
Length = 257
Score = 22.3 bits (46), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 53 MGKDHTLYALIDGVVKFEHKDRNRKKVSVV 82
+GKD TL ALI+ + + N K + +
Sbjct: 81 VGKDITLKALIEASMTYSDNTANNKIIKEI 110
>pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mutant, At 298k
Length = 258
Score = 22.3 bits (46), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 53 MGKDHTLYALIDGVVKFEHKDRNRKKVSVV 82
+GKD TL ALI+ + + N K + +
Sbjct: 81 VGKDITLKALIEASMTYSDNTANNKIIKEI 110
>pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6)
pdb|1BLC| Beta-Lactamase (E.C.3.5.2.6) Complex With Degradation Products Of
Clavulanate
pdb|1BLH| Beta-Lactamase (E.C.3.5.2.6) Complexed With
[[n-(Benzyloxycarbonyl)amino]methyl]phosphonate
Length = 257
Score = 22.3 bits (46), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 53 MGKDHTLYALIDGVVKFEHKDRNRKKVSVV 82
+GKD TL ALI+ + + N K + +
Sbjct: 80 VGKDITLKALIEASMTYSDNTANNKIIKEI 109
>pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphylococcus Aureus Pc1
Length = 266
Score = 22.3 bits (46), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 53 MGKDHTLYALIDGVVKFEHKDRNRKKVSVV 82
+GKD TL ALI+ + + N K + +
Sbjct: 126 VGKDITLKALIEASMTYSDNTANNKIIKEI 155
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.135 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,008
Number of Sequences: 13198
Number of extensions: 20032
Number of successful extensions: 41
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 14
length of query: 88
length of database: 2,899,336
effective HSP length: 64
effective length of query: 24
effective length of database: 2,054,664
effective search space: 49311936
effective search space used: 49311936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)