BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644927|ref|NP_207097.1| dipeptide ABC transporter,
permease protein (dppB) [Helicobacter pylori 26695]
         (334 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1GV0|A  Chain A, Structural Basis For Thermophilic Prote...    28  1.9
pdb|1SPG|B  Chain B, Carbonmonoxy Hemoglobin From The Teleos...    26  5.6

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
           Structures Of Thermophilic And Mesophilic Malate
           Dehydrogenases
 pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
           Structures Of Thermophilic And Mesophilic Malate
           Dehydrogenases
          Length = 310

 Score = 27.7 bits (60), Expect = 1.9
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 254 NALIPV---TTIAGLMLAGLLGGSMITETVFSWPGIGKWIVNALNQ 296
           +A++PV   TT+AG+ +A L+    I E V      G  IVN L Q
Sbjct: 176 DAMVPVVKYTTVAGIPVADLISAERIAELVERTRTGGAEIVNHLKQ 221



>pdb|1SPG|B Chain B, Carbonmonoxy Hemoglobin From The Teleost Fish Leiostomus
           Xanthurus
          Length = 147

 Score = 26.2 bits (56), Expect = 5.6
 Identities = 14/27 (51%), Positives = 16/27 (58%), Gaps = 2/27 (7%)

Query: 77  FGTSIMTGEPVMHEFWQRFPATVELAL 103
           FG S  T  P +HE WQ+F A V  AL
Sbjct: 118 FGPSAFT--PEIHEAWQKFLAVVVSAL 142



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.330    0.144    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,677,656
Number of Sequences: 13198
Number of extensions: 62776
Number of successful extensions: 197
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 2
length of query: 334
length of database: 2,899,336
effective HSP length: 89
effective length of query: 245
effective length of database: 1,724,714
effective search space: 422554930
effective search space used: 422554930
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.4 bits)