BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644928|ref|NP_207098.1| dipeptide ABC transporter,
permease protein (dppC) [Helicobacter pylori 26695]
         (285 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1G0X|A  Chain A, Crystal Structure Of The Ligand Binding...    26  4.6
pdb|1L5J|A  Chain A, Crystal Structure Of E. Coli Aconitase ...    26  6.0

>pdb|1G0X|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Lir-1
           (Ilt2)
          Length = 197

 Score = 26.2 bits (56), Expect = 4.6
 Identities = 14/38 (36%), Positives = 19/38 (49%), Gaps = 4/38 (10%)

Query: 56  WEHGGNAKYLLGTDDLGR----DILSRLIYGARISLTI 89
           WEH G  +   G+D  GR    D L  ++ GA I  T+
Sbjct: 66  WEHAGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTL 103



>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
 pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
          Length = 865

 Score = 25.8 bits (55), Expect = 6.0
 Identities = 15/38 (39%), Positives = 18/38 (46%)

Query: 244 MQYIATAPWMLVFPGVMIFLTVMSFNLVGDGIMDALDP 281
           MQ  A A W L  P +   LTV  F + G+   D L P
Sbjct: 147 MQSWADAEWFLNRPALAEKLTVTVFKVTGETNTDDLSP 184



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.328    0.144    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,520,021
Number of Sequences: 13198
Number of extensions: 57889
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 3
length of query: 285
length of database: 2,899,336
effective HSP length: 87
effective length of query: 198
effective length of database: 1,751,110
effective search space: 346719780
effective search space used: 346719780
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)