BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644930|ref|NP_207100.1| dipeptide ABC transporter,
ATP-binding protein (dppF) [Helicobacter pylori 26695]
(268 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G29|1 Chain 1, Malk >gi|12084695|pdb|1G29|2 Chain 2, Malk 133 2e-32
pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Pe... 131 7e-32
pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacteria... 110 2e-25
pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding... 108 8e-25
pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformati... 107 1e-24
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 105 4e-24
pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atp... 80 2e-16
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 79 7e-16
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 70 3e-13
pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B... 60 3e-10
pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed Wit... 27 2.4
pdb|1ESM|A Chain A, Structural Basis For The Feedback Regul... 26 5.4
pdb|1FTS| Signal Recognition Particle Receptor From E. Coli 25 7.1
pdb|1G8X|A Chain A, Structure Of A Genetically Engineered M... 25 7.1
pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Doma... 25 7.1
pdb|1MMG| X-Ray Structures Of The Mgadp, Mgatpgammas, And... 25 7.1
pdb|1LVK| X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-... 25 7.1
pdb|1MMA| X-Ray Structures Of The Mgadp, Mgatpgammas, And... 25 7.1
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain... 25 7.1
pdb|1MMD| Truncated Head Of Myosin From Dictyostelium Dis... 25 7.1
pdb|1MMN| X-Ray Structures Of The Mgadp, Mgatpgammas, And... 25 7.1
pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpa... 25 7.1
pdb|1MHC|A Chain A, Model Of Mhc Class I H2-M3 With Nonapep... 25 9.3
pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bon... 25 9.3
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 133 bits (334), Expect = 2e-32
Identities = 77/233 (33%), Positives = 131/233 (56%), Gaps = 5/233 (2%)
Query: 26 IHALNGISFEVEQNEVLSIVGESGCGKSTTAKILAGIERQDSGAIYFNGKRHLHFSKQDW 85
+ A+ +S EV+ E + ++G SGCGK+TT +++AG+E G IY K K +
Sbjct: 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIF 75
Query: 86 FDYRKK-VQMIFQDPYSSLNPRWKVGEIIAEPLLLNSHFSKKEIKTKVLEIMQKVGLKLE 144
+ + + M+FQ +L P V + IA PL L ++EI +V E+ + +GL E
Sbjct: 76 VPPKDRDIAMVFQS--YALYPHMTVYDNIAFPLKLRK-VPRQEIDQRVREVAELLGLT-E 131
Query: 145 WIDRYPHQFSGGQRQRIGIARALILHPSVVICDEPVSALDVSIQAQVLNLLLDLQKEMGL 204
++R P + SGGQRQR+ + RA++ P V + DEP+S LD ++ ++ L LQ+++G+
Sbjct: 132 LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV 191
Query: 205 TYIFISHDLGVVEHISDKIIVMNQGQIVETGDVDSVISAPKHPYTQKLLNAVP 257
T I+++HD + D+I VMN+G + + G D V P + + + + P
Sbjct: 192 TTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGSPP 244
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 131 bits (330), Expect = 7e-32
Identities = 78/235 (33%), Positives = 128/235 (54%), Gaps = 13/235 (5%)
Query: 29 LNGISFEVEQNEVLSIVGESGCGKSTTAKILAGIERQDSGAIYFNGKR---------HLH 79
L G+S + +V+SI+G SG GKST + + +E+ GAI NG+ L
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81
Query: 80 FSKQDWFDY-RKKVQMIFQDPYSSLNPRWKVGEIIAEPLLLNSHFSKKEIKTKVLEIMQK 138
+ ++ R ++ M+FQ + +L V E + E + SK + + + L+ + K
Sbjct: 82 VADKNQLRLLRTRLTMVFQ--HFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAK 139
Query: 139 VGLKLEWIDRYPHQFSGGQRQRIGIARALILHPSVVICDEPVSALDVSIQAQVLNLLLDL 198
VG+ +YP SGGQ+QR+ IARAL + P V++ DEP SALD + +VL ++ L
Sbjct: 140 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL 199
Query: 199 QKEMGLTYIFISHDLGVVEHISDKIIVMNQGQIVETGDVDSVISAPKHPYTQKLL 253
+E G T + ++H++G H+S +I ++QG+I E GD + V P+ P Q+ L
Sbjct: 200 AEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFL 253
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 110 bits (275), Expect = 2e-25
Identities = 64/232 (27%), Positives = 124/232 (52%), Gaps = 12/232 (5%)
Query: 3 LLEIKELKKSYAIDRGLFKPKRVIHALNGISFEVEQNEVLSIVGESGCGKSTTAKILAGI 62
++++K + K+Y + + +I+AL ++ +++ E +SI+G SG GKST I+ +
Sbjct: 1 MIKLKNVTKTYKMG------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL 54
Query: 63 ERQDSGAIYFNGKRHLHFSKQDWFDYRK-KVQMIFQDPYSSLNPRWKVGEIIAEPLLLNS 121
++ G +Y + + + R+ K+ +FQ +L P E + PL+
Sbjct: 55 DKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ--FNLIPLLTALENVELPLIFKY 112
Query: 122 H--FSKKEIKTKVLEIMQKVGLKLEWIDRYPHQFSGGQRQRIGIARALILHPSVVICDEP 179
S +E + + LE ++ L+ + + P+Q SGGQ+QR+ IARAL +P +++ D+P
Sbjct: 113 RGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 180 VSALDVSIQAQVLNLLLDLQKEMGLTYIFISHDLGVVEHISDKIIVMNQGQI 231
ALD +++ LL L +E G T + ++HD+ V ++II + G++
Sbjct: 173 TGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEV 223
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 108 bits (269), Expect = 8e-25
Identities = 65/231 (28%), Positives = 120/231 (51%), Gaps = 12/231 (5%)
Query: 4 LEIKELKKSYAIDRGLFKPKRVIHALNGISFEVEQNEVLSIVGESGCGKSTTAKILAGIE 63
+++K + K+Y + +I+AL ++ +++ E +SI G SG GKST I+ ++
Sbjct: 2 IKLKNVTKTYKXG------EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLD 55
Query: 64 RQDSGAIYFNGKRHLHFSKQDWFDYRK-KVQMIFQDPYSSLNPRWKVGEIIAEPLLLNSH 122
+ G +Y + + + R+ K+ +FQ +L P E + PL+
Sbjct: 56 KPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ--FNLIPLLTALENVELPLIFKYR 113
Query: 123 --FSKKEIKTKVLEIMQKVGLKLEWIDRYPHQFSGGQRQRIGIARALILHPSVVICDEPV 180
S +E + + LE ++ L+ + + P+Q SGGQ+QR+ IARAL +P +++ DEP
Sbjct: 114 GAXSGEERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPT 173
Query: 181 SALDVSIQAQVLNLLLDLQKEMGLTYIFISHDLGVVEHISDKIIVMNQGQI 231
ALD ++ LL L +E G T + ++HD+ V ++II + G++
Sbjct: 174 GALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEV 223
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 107 bits (268), Expect = 1e-24
Identities = 73/232 (31%), Positives = 121/232 (51%), Gaps = 18/232 (7%)
Query: 28 ALNGISFEVEQNEVLSIVGESGCGKSTTAKILAGIERQDSGAIYFNGKRHLHFSKQDWFD 87
AL+G+S V + +V I+G +G GKST ++ G + D G +YF K + + +
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 88 YRKKVQMIFQDPY----SSLNPRWKVGEIIAEPLLLNSHFSKKEIKTKVLEIMQKVGLKL 143
Y + FQ P ++ +GEI LNS F KK I K E+++K L
Sbjct: 82 Y--GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI-PKEEEMVEKAFKIL 138
Query: 144 EWI------DRYPHQFSGGQRQRIGIARALILHPSVVICDEPVSALDVSIQAQVLNLLLD 197
E++ DR + SGGQ + + I RAL+ +P +++ DEP++ + + + N +L+
Sbjct: 139 EFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 198 LQKEMGLTYIFISHDLGVVEHISDKIIVMNQGQIVETG----DVDSVISAPK 245
L K G+T++ I H L +V + D + VM GQI+ G ++ +V+S PK
Sbjct: 199 L-KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPK 249
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 105 bits (263), Expect = 4e-24
Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 18/232 (7%)
Query: 28 ALNGISFEVEQNEVLSIVGESGCGKSTTAKILAGIERQDSGAIYFNGKRHLHFSKQDWFD 87
AL+G+S V + +V I+G +G GKST ++ G + D G +YF K + + +
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 88 YRKKVQMIFQDPY----SSLNPRWKVGEIIAEPLLLNSHFSKKEIKTKVLEIMQKVGLKL 143
Y + FQ P ++ +GEI LNS F KK I K E+++K L
Sbjct: 82 Y--GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI-PKEEEMVEKAFKIL 138
Query: 144 EWI------DRYPHQFSGGQRQRIGIARALILHPSVVICDEPVSALDVSIQAQVLNLLLD 197
E++ DR + SGGQ + + I RAL+ +P +++ D+P++ + + + N +L+
Sbjct: 139 EFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLE 198
Query: 198 LQKEMGLTYIFISHDLGVVEHISDKIIVMNQGQIVETG----DVDSVISAPK 245
L K G+T++ I H L +V + D + VM GQI+ G ++ +V+S PK
Sbjct: 199 L-KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPK 249
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 80.5 bits (197), Expect = 2e-16
Identities = 66/219 (30%), Positives = 105/219 (47%), Gaps = 27/219 (12%)
Query: 29 LNGISFEVEQNEVLSIVGESGCGKSTTAKILAGIERQDSGAIYFNGK-------RHLHFS 81
L G++F + EV ++VG +G GKST A +L + + G + +GK R+LH
Sbjct: 33 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH-- 90
Query: 82 KQDWFDYRKKVQMIFQDPY---SSLNPRWKVGEIIAEPLLLNSHFSKKEIKTKVLEIMQK 138
++V + Q+P SL G + +P + + +K+ +
Sbjct: 91 --------RQVAAVGQEPQVFGRSLQENIAYG-LTQKPTM--EEITAAAVKSGAHSFISG 139
Query: 139 V--GLKLEWIDRYPHQFSGGQRQRIGIARALILHPSVVICDEPVSALDVSIQAQVLNLLL 196
+ G E +D Q SGGQRQ + +ARALI P V+I D+ SALD + Q QV LL
Sbjct: 140 LPQGYDTE-VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLY 198
Query: 197 DLQKEMGLTYIFISHDLGVVEHISDKIIVMNQGQIVETG 235
+ + + + I+ L +VE +D I+ + G I E G
Sbjct: 199 ESPERYSRSVLLITQHLSLVEQ-ADHILFLEGGAIREGG 236
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 78.6 bits (192), Expect = 7e-16
Identities = 62/226 (27%), Positives = 109/226 (47%), Gaps = 29/226 (12%)
Query: 22 PKRVIHALNGISFEVEQNEVLSIVGESGCGKSTTAKILAGIERQDSGAIYFNGKRHLHFS 81
P R + AL I+ ++ + +++VG SG GKST A ++ D G I +G ++
Sbjct: 352 PGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYT 411
Query: 82 KQDWFDYRKKVQMIFQDPYSSLNPRWKVGEIIAEPLLLNSHFSKKE-IKTKVLEIMQKVG 140
R +V ++ Q+ + + + + N +++ E + +E ++
Sbjct: 412 LAS---LRNQVALVSQNVH-----------LFNDTVANNIAYARTEQYSREQIEEAARMA 457
Query: 141 LKLEWIDRYPHQF-----------SGGQRQRIGIARALILHPSVVICDEPVSALDVSIQA 189
+++I++ + SGGQRQRI IARAL+ ++I DE SALD +
Sbjct: 458 YAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 190 QVLNLLLDLQKEMGLTYIFISHDLGVVEHISDKIIVMNQGQIVETG 235
+ L +LQK T + I+H L +E +D+I+V+ G IVE G
Sbjct: 518 AIQAALDELQKNR--TSLVIAHRLSTIEK-ADEIVVVEDGVIVERG 560
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 70.1 bits (170), Expect = 3e-13
Identities = 59/228 (25%), Positives = 104/228 (44%), Gaps = 45/228 (19%)
Query: 26 IHALNGISFEVEQNEVLSIVGESGCGKSTTAKILAGIERQDSGAIYFNGKRHLHFSKQDW 85
IHA+ GI +V + ++++++G +G GK+TT +AG+ R G I FNG+
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ---------- 68
Query: 86 FDYRKKVQMIFQDPYSSLNPRWK--VGEIIAEPLLLNSHFSKKEIKTKVLEIMQKVGLK- 142
D K + +L P + E+ L +++K+ K G+K
Sbjct: 69 -DITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKD----------KEGIKR 117
Query: 143 -LEWI-DRYPH----------QFSGGQRQRIGIARALILHPSVVICDEPVSALDVSIQAQ 190
LEWI +P SGG++Q + I RAL P ++ DEP L + ++
Sbjct: 118 DLEWIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSE 177
Query: 191 VLNLLLDLQKEMGLTYIFISHD-LGVVEHISDKIIVMNQGQIVETGDV 237
V ++ + +E G T + + + LG ++ V + G ++ETG +
Sbjct: 178 VFEVIQKINQE-GTTILLVEQNALGALK-------VAHYGYVLETGQI 217
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 59.7 bits (143), Expect = 3e-10
Identities = 57/223 (25%), Positives = 105/223 (46%), Gaps = 21/223 (9%)
Query: 29 LNGISFEVEQNEVLSIVGESGCGKSTTAKILAGIERQDSGAIYFNGKRHLHFSKQDWFDY 88
L +S EV E+L +VG +G GKST AG G+I F G+ +S +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSGKGSIQFAGQPLEAWSATKLALH 74
Query: 89 RKKVQMIFQDPYSSLNPRWKVGEIIAEPLLLNSHFSKKEIKTKVLEIMQKVGLKLEWIDR 148
R + P+++ P W L L+ H + +T++L + + + R
Sbjct: 75 RAYLSQQQTPPFAT--PVWHY-------LTLHQH---DKTRTELLNDVAGALALDDKLGR 122
Query: 149 YPHQFSGGQRQRIGIARALI-----LHPS--VVICDEPVSALDVSIQAQVLNLLLDLQKE 201
+Q SGG+ QR+ +A ++ +P+ +++ DEP ++LDV+ Q L+ +L +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVA-QQSALDKILSALCQ 181
Query: 202 MGLTYIFISHDLGVVEHISDKIIVMNQGQIVETGDVDSVISAP 244
GL + SHDL + + ++ G+ + +G + V++ P
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPP 224
>pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed With Mupirocin
pdb|1ILE| Isoleucyl-Trna Synthetase
pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
Length = 821
Score = 26.9 bits (58), Expect = 2.4
Identities = 26/124 (20%), Positives = 50/124 (39%), Gaps = 20/124 (16%)
Query: 7 KELKKSYAIDRGLFKPKRVIHALNGISFEVEQNEVLSIVGESGCGKSTTAKILAGIERQD 66
K+L Y RG + P+R +G+ E+E + L + KS GIER +
Sbjct: 64 KDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGL-------KSKREIEAYGIERFN 116
Query: 67 SGAIYFNGKRHLHFSKQDWFDYRKKVQ--MIFQDPYSSLNPR------WKVGEIIAEPLL 118
+ + +++W + +++ + +D Y++L P W + + LL
Sbjct: 117 QAC-----RESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLL 171
Query: 119 LNSH 122
H
Sbjct: 172 YRDH 175
>pdb|1ESM|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
Length = 316
Score = 25.8 bits (55), Expect = 5.4
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 41 VLSIVGESGCGKSTTAKILAGI 62
++SI G GKSTTA++L +
Sbjct: 90 IISIAGSVAVGKSTTARVLQAL 111
>pdb|1FTS| Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 25.4 bits (54), Expect = 7.1
Identities = 42/195 (21%), Positives = 85/195 (43%), Gaps = 24/195 (12%)
Query: 41 VLSIVGESGCGKSTT-AKILAGIERQDSGAIYFNGK--RHLHFSKQDWFDYRKKVQMIFQ 97
V+ +VG +G GK+TT K+ E+Q + G R + + R + +I Q
Sbjct: 95 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQ 154
Query: 98 ----DPYSSLNPRWKVGEIIAEPLLLNSHFSKKEIKTKVLEIMQKVGLKLEWID-RYPHQ 152
D S + + + +L+ + + K+ ++E ++K+ ++ +D PH+
Sbjct: 155 HTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHE 214
Query: 153 F------SGGQRQRIGIARALILHPSVVICDEPVSALDVSIQAQVLNLLLDLQKEMGLTY 206
S GQ +++A + H +V + ++ LD + + V+ + D + G+
Sbjct: 215 VMLTIDASTGQN---AVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVAD---QFGIPI 268
Query: 207 IFISHDLGVVEHISD 221
+I GV E I D
Sbjct: 269 RYI----GVGERIED 279
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 25.4 bits (54), Expect = 7.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 38 QNEVLSIVGESGCGKSTTAK 57
QN+ L I GESG GK+ K
Sbjct: 171 QNQSLLITGESGAGKTENTK 190
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 25.4 bits (54), Expect = 7.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 38 QNEVLSIVGESGCGKSTTAK 57
QN+ L I GESG GK+ K
Sbjct: 171 QNQSLLITGESGAGKTENTK 190
>pdb|1MMG| X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes
Of The Dictyostelium Discoideum Myosin Motor Domain
Length = 762
Score = 25.4 bits (54), Expect = 7.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 38 QNEVLSIVGESGCGKSTTAK 57
QN+ L I GESG GK+ K
Sbjct: 171 QNQSLLITGESGAGKTENTK 190
>pdb|1LVK| X-Ray Crystal Structure Of The Mg (Dot)
2'(3')-O-(N-Methylanthraniloyl) Nucleotide Bound To
Dictyostelium Discoideum Myosin Motor Domain
Length = 762
Score = 25.4 bits (54), Expect = 7.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 38 QNEVLSIVGESGCGKSTTAK 57
QN+ L I GESG GK+ K
Sbjct: 171 QNQSLLITGESGAGKTENTK 190
>pdb|1MMA| X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes
Of The Dictyostelium Discoideum Myosin Motor Domain
Length = 762
Score = 25.4 bits (54), Expect = 7.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 38 QNEVLSIVGESGCGKSTTAK 57
QN+ L I GESG GK+ K
Sbjct: 171 QNQSLLITGESGAGKTENTK 190
>pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride.
pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride
Length = 761
Score = 25.4 bits (54), Expect = 7.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 38 QNEVLSIVGESGCGKSTTAK 57
QN+ L I GESG GK+ K
Sbjct: 171 QNQSLLITGESGAGKTENTK 190
>pdb|1MMD| Truncated Head Of Myosin From Dictyostelium Discoideum Complexed
With Mgadp-Bef3
pdb|1MNE| Truncated Head Of Myosin From Dictyostelium Discoideum Complexed
With Mg-Pyrophosphate
pdb|1VOM| Complex Between Dictyostelium Myosin And Mgadp And Vanadate At
1.9a Resolution
pdb|1MND| Truncated Head Of Myosin From Dictyostelium Discoideum Complexed
With Mgadp-Alf4
Length = 762
Score = 25.4 bits (54), Expect = 7.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 38 QNEVLSIVGESGCGKSTTAK 57
QN+ L I GESG GK+ K
Sbjct: 171 QNQSLLITGESGAGKTENTK 190
>pdb|1MMN| X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes
Of The Dictyostelium Discoideum Myosin Motor Domain
Length = 762
Score = 25.4 bits (54), Expect = 7.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 38 QNEVLSIVGESGCGKSTTAK 57
QN+ L I GESG GK+ K
Sbjct: 171 QNQSLLITGESGAGKTENTK 190
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 25.4 bits (54), Expect = 7.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 38 QNEVLSIVGESGCGKSTTAK 57
QN+ L I GESG GK+ K
Sbjct: 182 QNQSLLITGESGAGKTENTK 201
>pdb|1MHC|A Chain A, Model Of Mhc Class I H2-M3 With Nonapeptide From Rat Nd1
Refined At 2.3 Angstroms Resolution
pdb|1MHC|D Chain D, Model Of Mhc Class I H2-M3 With Nonapeptide From Rat Nd1
Refined At 2.3 Angstroms Resolution
Length = 282
Score = 25.0 bits (53), Expect = 9.3
Identities = 13/31 (41%), Positives = 16/31 (50%)
Query: 126 KEIKTKVLEIMQKVGLKLEWIDRYPHQFSGG 156
KE+K KV I Q L + RY +Q GG
Sbjct: 61 KELKLKVKNIAQSARANLRTLLRYYNQSEGG 91
>pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bond Conformation Of
Phoq Kinase Domain
Length = 152
Score = 25.0 bits (53), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 169 LHPSVVICDEPVSALDVSIQAQVLNLLLDLQKEM 202
LHP + D SAL+ Q + +N+ LD+ E+
Sbjct: 3 LHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI 36
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,489,720
Number of Sequences: 13198
Number of extensions: 59979
Number of successful extensions: 239
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 36
length of query: 268
length of database: 2,899,336
effective HSP length: 87
effective length of query: 181
effective length of database: 1,751,110
effective search space: 316950910
effective search space used: 316950910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)