BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644637|ref|NP_206805.1| 3-deoxy-d-manno-octulosonic
acid 8-phosphate synthetase (kdsA) [Helicobacter pylori 26695]
(276 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FXQ|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Comp... 248 5e-67
pdb|1G7V|A Chain A, Crystal Structures Of Kdo8p Synthase In... 199 2e-52
pdb|1G7U|A Chain A, Crystal Structures Of Kdo8p Synthase In... 198 5e-52
pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-Ph... 35 0.012
pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain 28 1.5
pdb|1J9M|A Chain A, K38h Mutant Of Streptomyces K15 Dd-Tran... 26 4.4
pdb|1ES3|A Chain A, C98a Mutant Of Streptomyces K15 Dd-Tran... 26 4.4
pdb|1ES2|A Chain A, S96a Mutant Of Streptomyces K15 Dd-Tran... 26 4.4
pdb|1ES4|A Chain A, C98n Mutant Of Streptomyces K15 Dd-Tran... 26 4.4
pdb|1ESI|A Chain A, R248l Mutant Of Streptomyces K15 Dd-Tra... 26 4.4
pdb|1SKF| Crystal Structure Of The Streptomyces K15 Dd-Tr... 26 4.4
pdb|1ES5|A Chain A, S216a Mutant Of Streptomyces K15 Dd-Tra... 26 4.4
pdb|1JKM|B Chain B, Brefeldin A Esterase, A Bacterial Homol... 25 7.4
pdb|1M9I|A Chain A, Crystal Structure Of Phosphorylation-Mi... 25 7.4
pdb|1JKM|A Chain A, Brefeldin A Esterase, A Bacterial Homol... 25 7.4
>pdb|1FXQ|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
A5p
pdb|1FWW|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, A5p
And Cadmium
pdb|1FWT|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, E4p
And Cadmium
pdb|1JCY|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With R5p, Pep
And Cadmium
pdb|1FXQ|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
A5p
pdb|1FY6|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
And A5p
pdb|1FWS|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
Cadmium
pdb|1FWS|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
Cadmium
pdb|1FWN|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep
pdb|1FWN|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep
pdb|1JCX|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Api And
Cadmium
pdb|1FWW|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, A5p
And Cadmium
pdb|1JCY|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With R5p, Pep
And Cadmium
pdb|1JCX|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Api And
Cadmium
pdb|1FY6|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
And A5p
pdb|1FWT|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, E4p
And Cadmium
pdb|1FXP|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
pdb|1FX6|A Chain A, Aquifex Aeolicus Kdo8p Synthase
pdb|1FXP|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
pdb|1FX6|B Chain B, Aquifex Aeolicus Kdo8p Synthase
Length = 267
Score = 248 bits (633), Expect = 5e-67
Identities = 132/267 (49%), Positives = 184/267 (68%), Gaps = 14/267 (5%)
Query: 10 KSVLIAGPCVIESLENLRSIATKLQPLANN-ERLDFYFKASFDKANRTSLESYRGPGLEK 68
K ++IAGPC IES E L + +++ L+ + ++F FK+SFDKANR+S+ S+RG GLE
Sbjct: 3 KFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEY 62
Query: 69 GLEMLQTIKEEFGYKILTDVHESYQASVAAKVADILQIPAFLCRQTDLIVEVSQTNAIVN 128
G++ L+ +KEEFG KI TD+HES+QA A+VADI+QIPAFLCRQTDL++ ++T VN
Sbjct: 63 GVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVN 122
Query: 129 IKKGQFMNPKDMQYSVLKALKTRDKSIQSPTYETALKNGVWLCERGSSFGYGNLVVDMRS 188
+KKGQF+ P D + +V++ LK ++L ERG++FGY NLVVD RS
Sbjct: 123 VKKGQFLAPWDTK-NVVEKLKFGG------------AKEIYLTERGTTFGYNNLVVDFRS 169
Query: 189 LKIMREFAPVIFDATHSVQMPGGANGKSSGDSSFAPILARAAAAVGIDGLFAETHVDPKN 248
L IM+++A VI+DATHSVQ+PGG KS G F L RAA AVG DG+F ETH +P+
Sbjct: 170 LPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEK 229
Query: 249 ALSDGANMLKPDELEQLVTDMLKIQNL 275
ALSD + L +LE ++ +L+I+ +
Sbjct: 230 ALSDASTQLPLSQLEGIIEAILEIREV 256
>pdb|1G7V|A Chain A, Crystal Structures Of Kdo8p Synthase In Its Binary
Complexes With The Mechanism-Based Inhibitor
pdb|1D9E|A Chain A, Structure Of E. Coli Kdo8p Synthase
pdb|1D9E|B Chain B, Structure Of E. Coli Kdo8p Synthase
pdb|1D9E|C Chain C, Structure Of E. Coli Kdo8p Synthase
pdb|1D9E|D Chain D, Structure Of E. Coli Kdo8p Synthase
pdb|1GG0|A Chain A, Crystal Structure Analysis Of Kdop Synthase At 3.0 A
Length = 284
Score = 199 bits (507), Expect = 2e-52
Identities = 113/267 (42%), Positives = 157/267 (58%), Gaps = 16/267 (5%)
Query: 12 VLIAGPCVIESLENLRSIATKLQPLANNERLDFYFKASFDKANRTSLESYRGPGLEKGLE 71
VL G V+ES + I + + + FKASFDKANR+S+ SYRGPGLE+G++
Sbjct: 20 VLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMK 79
Query: 72 MLQTIKEEFGYKILTDVHESYQASVAAKVADILQIPAFLCRQTDLIVEVSQTNAIVNIKK 131
+ Q +K+ FG KI+TDVHE QA A V D++Q+PAFL RQTDL+ +++T A++N+KK
Sbjct: 80 IFQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKK 139
Query: 132 GQFMNPKDMQYSVLKALKTRDKSIQSPTYETALKNGVWLCERGSSFGYGNLVVDMRSLKI 191
QF++P M V K ++ V LC+RG++FGY NLVVDM I
Sbjct: 140 PQFVSPGQMGNIVDK-------------FKEGGNEKVILCDRGANFGYDNLVVDMLGFSI 186
Query: 192 MREF---APVIFDATHSVQMPGGANGKSSGDSSFAPILARAAAAVGIDGLFAETHVDPKN 248
M++ +PVIFD TH++Q S G + LARA AVG+ GLF E H DP++
Sbjct: 187 MKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEAHPDPEH 246
Query: 249 ALSDGANMLKPDELEQLVTDMLKIQNL 275
A DG + L +LE + M I +L
Sbjct: 247 AKCDGPSALPLAKLEPFLKQMKAIDDL 273
>pdb|1G7U|A Chain A, Crystal Structures Of Kdo8p Synthase In Its Binary Complex
With Substrate Phosphoenol Pyruvate
Length = 284
Score = 198 bits (504), Expect = 5e-52
Identities = 113/267 (42%), Positives = 157/267 (58%), Gaps = 16/267 (5%)
Query: 12 VLIAGPCVIESLENLRSIATKLQPLANNERLDFYFKASFDKANRTSLESYRGPGLEKGLE 71
VL G V+ES + I + + + FKASFDKANR+S+ SYRGPGLE+G++
Sbjct: 20 VLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMK 79
Query: 72 MLQTIKEEFGYKILTDVHESYQASVAAKVADILQIPAFLCRQTDLIVEVSQTNAIVNIKK 131
+ Q +K+ FG KI+TDVHE QA A V D++Q+PAFL RQTDL+ +++T A++N+KK
Sbjct: 80 IFQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKK 139
Query: 132 GQFMNPKDMQYSVLKALKTRDKSIQSPTYETALKNGVWLCERGSSFGYGNLVVDMRSLKI 191
QF++P M V K ++ V LC+RG++FGY NLVVDM I
Sbjct: 140 PQFVSPGQMGNIVDK-------------FKEGGNEKVILCDRGANFGYDNLVVDMLGFSI 186
Query: 192 MREF---APVIFDATHSVQMPGGANGKSSGDSSFAPILARAAAAVGIDGLFAETHVDPKN 248
M++ +PVIFD TH++Q S G + LARA AVG+ GLF E H DP++
Sbjct: 187 MKKVSGNSPVIFDVTHALQCRDPFVAASGGRRAQVAELARAGMAVGLAGLFIEAHPDPEH 246
Query: 249 ALSDGANMLKPDELEQLVTDMLKIQNL 275
A DG + L +LE + M I +L
Sbjct: 247 AKCDGPSALPLAKLEPFLKQMKAIDDL 273
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-Phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-Phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 34.7 bits (78), Expect = 0.012
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Query: 129 IKKGQFMNPKDMQYSVLKALKTRDKSIQSPTYETALKNGVWLCERGSSFGYGNLVVDMRS 188
+K Q ++P D+ +L+ LK + +A KNG +L ER + GY + + D
Sbjct: 81 VKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGYFDAIADPAE 140
Query: 189 LKIMREFAPVIFDATHSVQM-PGGANGKSSGDSSFAPILARAAAAVGI 235
+ + + A H+V + P + G + I A +G+
Sbjct: 141 VAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSGALPIGV 188
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
Length = 316
Score = 27.7 bits (60), Expect = 1.5
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 214 GKSSGDSSFAPILARAAAAVGIDGLFAETHVDPKNALSDGANMLKPDELEQLVTDML 270
GK G+ F ++ A AVGID PK A++ MLK D E+ ++D++
Sbjct: 32 GKPLGEGCFGQVVM--AEAVGID------KDKPKEAVTVAVKMLKDDATEKDLSDLV 80
>pdb|1J9M|A Chain A, K38h Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 26.2 bits (56), Expect = 4.4
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 210 GGANGKSSGDSSFAPILARAAAAVGIDGLFAETHVDPKNALSDGANMLKPDELEQLVTDM 269
G + +++ SF + AA +G+ TH D + + +GAN P +L ++ +
Sbjct: 109 GSGSTRAARVKSFIGKMNTAATNLGLHN----THFDSFDGIGNGANYSTPRDLTKIASSA 164
Query: 270 LK 271
+K
Sbjct: 165 MK 166
>pdb|1ES3|A Chain A, C98a Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 26.2 bits (56), Expect = 4.4
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 210 GGANGKSSGDSSFAPILARAAAAVGIDGLFAETHVDPKNALSDGANMLKPDELEQLVTDM 269
G + +++ SF + AA +G+ TH D + + +GAN P +L ++ +
Sbjct: 109 GSGSTRAARVKSFIGKMNTAATNLGLHN----THFDSFDGIGNGANYSTPRDLTKIASSA 164
Query: 270 LK 271
+K
Sbjct: 165 MK 166
>pdb|1ES2|A Chain A, S96a Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 26.2 bits (56), Expect = 4.4
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 210 GGANGKSSGDSSFAPILARAAAAVGIDGLFAETHVDPKNALSDGANMLKPDELEQLVTDM 269
G + +++ SF + AA +G+ TH D + + +GAN P +L ++ +
Sbjct: 109 GSGSTRAARVKSFIGKMNTAATNLGLHN----THFDSFDGIGNGANYSTPRDLTKIASSA 164
Query: 270 LK 271
+K
Sbjct: 165 MK 166
>pdb|1ES4|A Chain A, C98n Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 26.2 bits (56), Expect = 4.4
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 210 GGANGKSSGDSSFAPILARAAAAVGIDGLFAETHVDPKNALSDGANMLKPDELEQLVTDM 269
G + +++ SF + AA +G+ TH D + + +GAN P +L ++ +
Sbjct: 109 GSGSTRAARVKSFIGKMNTAATNLGLHN----THFDSFDGIGNGANYSTPRDLTKIASSA 164
Query: 270 LK 271
+K
Sbjct: 165 MK 166
>pdb|1ESI|A Chain A, R248l Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 26.2 bits (56), Expect = 4.4
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 210 GGANGKSSGDSSFAPILARAAAAVGIDGLFAETHVDPKNALSDGANMLKPDELEQLVTDM 269
G + +++ SF + AA +G+ TH D + + +GAN P +L ++ +
Sbjct: 109 GSGSTRAARVKSFIGKMNTAATNLGLHN----THFDSFDGIGNGANYSTPRDLTKIASSA 164
Query: 270 LK 271
+K
Sbjct: 165 MK 166
>pdb|1SKF| Crystal Structure Of The Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 26.2 bits (56), Expect = 4.4
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 210 GGANGKSSGDSSFAPILARAAAAVGIDGLFAETHVDPKNALSDGANMLKPDELEQLVTDM 269
G + +++ SF + AA +G+ TH D + + +GAN P +L ++ +
Sbjct: 109 GSGSTRAARVKSFIGKMNTAATNLGLHN----THFDSFDGIGNGANYSTPRDLTKIASSA 164
Query: 270 LK 271
+K
Sbjct: 165 MK 166
>pdb|1ES5|A Chain A, S216a Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 26.2 bits (56), Expect = 4.4
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 210 GGANGKSSGDSSFAPILARAAAAVGIDGLFAETHVDPKNALSDGANMLKPDELEQLVTDM 269
G + +++ SF + AA +G+ TH D + + +GAN P +L ++ +
Sbjct: 109 GSGSTRAARVKSFIGKMNTAATNLGLHN----THFDSFDGIGNGANYSTPRDLTKIASSA 164
Query: 270 LK 271
+K
Sbjct: 165 MK 166
>pdb|1JKM|B Chain B, Brefeldin A Esterase, A Bacterial Homologue Of Human
Hormone Sensitive Lipase
Length = 361
Score = 25.4 bits (54), Expect = 7.4
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 209 PGGANGKSSG---DSSFAPILARAAAAVGIDGLFAETHVDPKNAL 250
PG +SSG D F+P + A A G+D + A V + L
Sbjct: 4 PGRLGDESSGPRTDPRFSPAMVEALATFGLDAVAAAPPVSASDDL 48
>pdb|1M9I|A Chain A, Crystal Structure Of Phosphorylation-Mimicking Mutant
T356d Of Annexin Vi
Length = 672
Score = 25.4 bits (54), Expect = 7.4
Identities = 10/38 (26%), Positives = 19/38 (49%)
Query: 71 EMLQTIKEEFGYKILTDVHESYQASVAAKVADILQIPA 108
++ QT K FG ++TD+ +A + ++ PA
Sbjct: 399 QIRQTFKSHFGRDLMTDLKSEISGDLARLILGLMMPPA 436
>pdb|1JKM|A Chain A, Brefeldin A Esterase, A Bacterial Homologue Of Human
Hormone Sensitive Lipase
Length = 358
Score = 25.4 bits (54), Expect = 7.4
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 209 PGGANGKSSG---DSSFAPILARAAAAVGIDGLFAETHVDPKNAL 250
PG +SSG D F+P + A A G+D + A V + L
Sbjct: 1 PGRLGDESSGPRTDPRFSPAMVEALATFGLDAVAAAPPVSASDDL 45
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.133 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,486,111
Number of Sequences: 13198
Number of extensions: 58209
Number of successful extensions: 176
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 15
length of query: 276
length of database: 2,899,336
effective HSP length: 87
effective length of query: 189
effective length of database: 1,751,110
effective search space: 330959790
effective search space used: 330959790
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)