BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644932|ref|NP_207102.1| hypothetical protein
[Helicobacter pylori 26695]
(329 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase 29 0.64
pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase 29 0.64
pdb|1WHT|A Chain A, Serine Carboxypeptidase Ii (E.C.3.4.16.... 28 1.9
pdb|1WHS|A Chain A, Serine Carboxypeptidase Ii (E.C.3.4.16.... 28 1.9
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypept... 28 1.9
pdb|3SC2|A Chain A, Serine Carboxypeptidase Ii (E.C.3.4.16.... 28 1.9
pdb|1QAZ|A Chain A, Crystal Structure Of Alginate Lyase A1-... 27 2.4
pdb|1EZM| Elastase (E.C.3.4.24.26) (Zinc Metalloprotease) 27 3.2
pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclo... 27 4.2
pdb|6ALD|A Chain A, Rabbit Muscle Aldolase AFRUCTOSE-1,6-Bi... 26 7.1
pdb|1EWD|A Chain A, Fructose 1,6-Bisphosphate Aldolase From... 26 7.1
pdb|1J4E|A Chain A, Fructose-1,6-Bisphosphate Aldolase Cova... 26 7.1
pdb|1EWG|A Chain A, Fructose 1,6-Bisphosphate Aldolase From... 26 7.1
pdb|1EWE|A Chain A, Fructose 1,6-Bisphosphate Aldolase From... 26 7.1
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal ... 26 7.1
pdb|1EX5|A Chain A, Fructose 1,6-Bisphosphate Aldolase From... 26 7.1
pdb|1ADO|A Chain A, Fructose 1,6-Bisphosphate Aldolase From... 26 7.1
pdb|1ALD| Aldolase A (E.C.4.1.2.13) >gi|4930167|pdb|2ALD|... 26 7.1
>pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase
Length = 343
Score = 29.3 bits (64), Expect = 0.64
Identities = 22/86 (25%), Positives = 39/86 (44%), Gaps = 5/86 (5%)
Query: 76 KSALMSYDLALGYLVSKNKQYGLKAIEILNAWAKELQSVDTYQSEDNINFYMPYMNMAYW 135
+S+ + D +L Y+V+KN A ++N + + + TY F P + + +
Sbjct: 125 QSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPV-----FVKPARSGSSF 179
Query: 136 FVKKAFPSPEYEDFIKRMRQYSQSAL 161
VKK + E + I+ RQY L
Sbjct: 180 GVKKVNSADELDYAIESARQYDSKIL 205
>pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase
Length = 343
Score = 29.3 bits (64), Expect = 0.64
Identities = 22/86 (25%), Positives = 39/86 (44%), Gaps = 5/86 (5%)
Query: 76 KSALMSYDLALGYLVSKNKQYGLKAIEILNAWAKELQSVDTYQSEDNINFYMPYMNMAYW 135
+S+ + D +L Y+V+KN A ++N + + + TY F P + + +
Sbjct: 125 QSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPV-----FVKPARSGSSF 179
Query: 136 FVKKAFPSPEYEDFIKRMRQYSQSAL 161
VKK + E + I+ RQY L
Sbjct: 180 GVKKVNSADELDYAIESARQYDSKIL 205
>pdb|1WHT|A Chain A, Serine Carboxypeptidase Ii (E.C.3.4.16.1) Complexed With
L-Benzylsuccinate
Length = 256
Score = 27.7 bits (60), Expect = 1.9
Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 2/37 (5%)
Query: 113 SVDTYQSEDNINFYMPYMNMAYWFVKKAFPSPEYEDF 149
S D Y S DN + Y +A WF + FP +Y DF
Sbjct: 114 SSDIYTSGDNRTAHDSYAFLAKWF--ERFPHYKYRDF 148
>pdb|1WHS|A Chain A, Serine Carboxypeptidase Ii (E.C.3.4.16.1) (Native Form)
Length = 255
Score = 27.7 bits (60), Expect = 1.9
Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 2/37 (5%)
Query: 113 SVDTYQSEDNINFYMPYMNMAYWFVKKAFPSPEYEDF 149
S D Y S DN + Y +A WF + FP +Y DF
Sbjct: 113 SSDIYTSGDNRTAHDSYAFLAKWF--ERFPHYKYRDF 147
>pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
Length = 263
Score = 27.7 bits (60), Expect = 1.9
Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 2/37 (5%)
Query: 113 SVDTYQSEDNINFYMPYMNMAYWFVKKAFPSPEYEDF 149
S D Y S DN + Y +A WF + FP +Y DF
Sbjct: 118 SSDIYTSGDNRTAHDSYAFLAKWF--ERFPHYKYRDF 152
>pdb|3SC2|A Chain A, Serine Carboxypeptidase Ii (E.C.3.4.16.1) (Cpdw-Ii)
Length = 259
Score = 27.7 bits (60), Expect = 1.9
Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 2/37 (5%)
Query: 113 SVDTYQSEDNINFYMPYMNMAYWFVKKAFPSPEYEDF 149
S D Y S DN + Y +A WF + FP +Y DF
Sbjct: 118 SSDIYTSGDNRTAHDSYAFLAKWF--ERFPHYKYRDF 152
>pdb|1QAZ|A Chain A, Crystal Structure Of Alginate Lyase A1-Iii From
Sphingomonas Species A1 At 1.78a Resolution
pdb|1HV6|A Chain A, Crystal Structure Of Alginate Lyase A1-Iii Complexed With
Trisaccharide Product
Length = 351
Score = 27.3 bits (59), Expect = 2.4
Identities = 29/117 (24%), Positives = 47/117 (39%), Gaps = 16/117 (13%)
Query: 164 NHGAW-GILFDVSSALALDDNALLHNSANRWQEWVFKAIDENGVIASAITRSDTSDYHGG 222
NH W G + ++ DD L R+ + I+E+G +TR + S
Sbjct: 188 NHSYWRGQEATIIGVISKDDE-LFRWGLGRYVQ-AMGLINEDGSFVHEMTRHEQS----- 240
Query: 223 PTKGIKGIAYTNFALLALTISGELLFENGYDLWG-SGAGKRLSVAYNKVATWILNPE 278
+ Y N+A+L LT+ E G DL+ G+ + A V + NP+
Sbjct: 241 -------LHYQNYAMLPLTMIAETASRQGIDLYAYKENGRDIHSARKFVFAAVKNPD 290
>pdb|1EZM| Elastase (E.C.3.4.24.26) (Zinc Metalloprotease)
Length = 301
Score = 26.9 bits (58), Expect = 3.2
Identities = 27/101 (26%), Positives = 43/101 (41%), Gaps = 22/101 (21%)
Query: 83 DLALGYLVSKNKQYGLKAIEILNAWAKELQSVDT----YQSED--------NINFYMPYM 130
D +GY + K G A+ ++ +++ +S+D Y D N FY+
Sbjct: 183 DFLIGYDIKK----GSGALRYMDQPSRDGRSIDNASQYYNGIDVHHSSGVYNRAFYL-LA 237
Query: 131 NMAYWFVKKAFPSPEYEDFIKRMRQYSQSALNTNHGAWGIL 171
N W +KAF E F+ R Y + N N GA G++
Sbjct: 238 NSPGWDTRKAF-----EVFVDANRYYWTATSNYNSGACGVI 273
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
Length = 302
Score = 26.6 bits (57), Expect = 4.2
Identities = 14/53 (26%), Positives = 24/53 (44%), Gaps = 4/53 (7%)
Query: 82 YDLALGYLVSKNKQYGLKAIEILNAWAKELQS----VDTYQSEDNINFYMPYM 130
Y G+ V + + G + LNAWA LQ+ + ++ + YM Y+
Sbjct: 229 YSSNAGWKVERYHRIGANYVPTLNAWADALQAHKDEAIALKGQETCDIYMHYL 281
>pdb|6ALD|A Chain A, Rabbit Muscle Aldolase AFRUCTOSE-1,6-Bisphosphate Complex
pdb|6ALD|B Chain B, Rabbit Muscle Aldolase AFRUCTOSE-1,6-Bisphosphate Complex
pdb|6ALD|C Chain C, Rabbit Muscle Aldolase AFRUCTOSE-1,6-Bisphosphate Complex
pdb|6ALD|D Chain D, Rabbit Muscle Aldolase AFRUCTOSE-1,6-Bisphosphate Complex
Length = 363
Score = 25.8 bits (55), Expect = 7.1
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 98 LKAIEILNAWAKELQSVDTYQSEDNINFY 126
L A E + AK LQS+ T +E+N FY
Sbjct: 30 LAADESTGSIAKRLQSIGTENTEENRRFY 58
>pdb|1EWD|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EWD|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EWD|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EWD|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
Length = 363
Score = 25.8 bits (55), Expect = 7.1
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 98 LKAIEILNAWAKELQSVDTYQSEDNINFY 126
L A E + AK LQS+ T +E+N FY
Sbjct: 30 LAADESTGSIAKRLQSIGTENTEENRRFY 58
>pdb|1J4E|A Chain A, Fructose-1,6-Bisphosphate Aldolase Covalently Bound To The
Substrate Dihydroxyacetone Phosphate
pdb|1J4E|B Chain B, Fructose-1,6-Bisphosphate Aldolase Covalently Bound To The
Substrate Dihydroxyacetone Phosphate
pdb|1J4E|C Chain C, Fructose-1,6-Bisphosphate Aldolase Covalently Bound To The
Substrate Dihydroxyacetone Phosphate
pdb|1J4E|D Chain D, Fructose-1,6-Bisphosphate Aldolase Covalently Bound To The
Substrate Dihydroxyacetone Phosphate
Length = 363
Score = 25.8 bits (55), Expect = 7.1
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 98 LKAIEILNAWAKELQSVDTYQSEDNINFY 126
L A E + AK LQS+ T +E+N FY
Sbjct: 30 LAADESTGSIAKRLQSIGTENTEENRRFY 58
>pdb|1EWG|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EWG|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EWG|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EWG|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
Length = 363
Score = 25.8 bits (55), Expect = 7.1
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 98 LKAIEILNAWAKELQSVDTYQSEDNINFY 126
L A E + AK LQS+ T +E+N FY
Sbjct: 30 LAADESTGSIAKRLQSIGTENTEENRRFY 58
>pdb|1EWE|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EWE|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EWE|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EWE|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
Length = 363
Score = 25.8 bits (55), Expect = 7.1
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 98 LKAIEILNAWAKELQSVDTYQSEDNINFY 126
L A E + AK LQS+ T +E+N FY
Sbjct: 30 LAADESTGSIAKRLQSIGTENTEENRRFY 58
>pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle D-
Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle D-
Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 334
Score = 25.8 bits (55), Expect = 7.1
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 222 GPTKGIKGIAYTNFALLALTISGELLFENGYDLWGSGAGKRLSVAYNKVATWILN 276
GP KGI G YT +++ +G N ++ +GAG L+ + K+ +W N
Sbjct: 267 GPLKGILG--YTEDEVVSDDFNGS----NHSSIFDAGAGIELNDTFVKLVSWYDN 315
>pdb|1EX5|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EX5|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EX5|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EX5|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
Length = 363
Score = 25.8 bits (55), Expect = 7.1
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 98 LKAIEILNAWAKELQSVDTYQSEDNINFY 126
L A E + AK LQS+ T +E+N FY
Sbjct: 30 LAADESTGSIAKRLQSIGTENTEENRRFY 58
>pdb|1ADO|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1ADO|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1ADO|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1ADO|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
Length = 363
Score = 25.8 bits (55), Expect = 7.1
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 98 LKAIEILNAWAKELQSVDTYQSEDNINFY 126
L A E + AK LQS+ T +E+N FY
Sbjct: 30 LAADESTGSIAKRLQSIGTENTEENRRFY 58
>pdb|1ALD| Aldolase A (E.C.4.1.2.13)
pdb|2ALD|A Chain A, Human Muscle Aldolase
pdb|4ALD| Human Muscle Fructose 1,6-Bisphosphate Aldolase Complexed With
Fructose 1,6-Bisphosphate
Length = 363
Score = 25.8 bits (55), Expect = 7.1
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 98 LKAIEILNAWAKELQSVDTYQSEDNINFY 126
L A E + AK LQS+ T +E+N FY
Sbjct: 30 LAADESTGSIAKRLQSIGTENTEENRRFY 58
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,040,987
Number of Sequences: 13198
Number of extensions: 87671
Number of successful extensions: 233
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 18
length of query: 329
length of database: 2,899,336
effective HSP length: 89
effective length of query: 240
effective length of database: 1,724,714
effective search space: 413931360
effective search space used: 413931360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)