BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644933|ref|NP_207103.1| hypothetical protein
[Helicobacter pylori 26695]
(184 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EUV|B Chain B, X-Ray Structure Of The C-Terminal Ulp1 ... 31 0.097
pdb|1L2N|A Chain A, Smt3 Solution Structure 31 0.097
pdb|1H61|A Chain A, Structure Of Pentaerythritol Tetranitra... 27 1.1
pdb|1IU4|A Chain A, Crystal Structure Analysis Of The Micro... 25 4.1
pdb|1FUX|B Chain B, Crystal Structure Of E.Coli Ybcl, A New... 25 5.3
pdb|2OCC|D Chain D, Bovine Heart Cytochrome C Oxidase At Th... 25 5.3
pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase >... 25 7.0
pdb|1KXR|B Chain B, Crystal Structure Of Calcium-Bound Prot... 25 7.0
pdb|1E8O|A Chain A, Core Of The Alu Domain Of The Mammalian... 24 9.1
pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalani... 24 9.1
>pdb|1EUV|B Chain B, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain
In Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 86
Score = 30.8 bits (68), Expect = 0.097
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 32 FKTKAKTPVNGSFESITYKLGKSQDSLKTLLEGASASMDSLKVNLGDELKNKNVKEA 88
FK K TP+ E+ + GK DSL+ L +G D +L ++++ ++ EA
Sbjct: 25 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL--DMEDNDIIEA 79
>pdb|1L2N|A Chain A, Smt3 Solution Structure
Length = 101
Score = 30.8 bits (68), Expect = 0.097
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 32 FKTKAKTPVNGSFESITYKLGKSQDSLKTLLEGASASMDSLKVNLGDELKNKNVKEA 88
FK K TP+ E+ + GK DSL+ L +G D +L ++++ ++ EA
Sbjct: 37 FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL--DMEDNDIIEA 91
>pdb|1H61|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Prednisone
pdb|1H50|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase And
Complexes
pdb|1H60|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Progesterone
pdb|1H63|A Chain A, Structure Of The Reduced Pentaerythritol Tetranitrate
Reductase
pdb|1H62|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With 1,4-Androstadien-3,17-Dione
Length = 364
Score = 27.3 bits (59), Expect = 1.1
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 23/122 (18%)
Query: 29 WTAFKTKAKTPVNGSFESITYKLGKSQDSLKTLLEGASASMDSLKVNLGDELKNKNVKEA 88
W+A + + G+F+++ + D+L + E A + L ++ D K EA
Sbjct: 225 WSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEA 284
Query: 89 FFALFKNTNIKVTFRNVIEGDHAGSLTAYVRMNEKLVKVPMQYTIAEDKIVVKGVLDLLN 148
F ++ F VI G AG+ TA EK AED ++ KG++D +
Sbjct: 285 F-----RQKVRERFHGVIIG--AGAYTA-----EK----------AED-LIGKGLIDAVA 321
Query: 149 FG 150
FG
Sbjct: 322 FG 323
>pdb|1IU4|A Chain A, Crystal Structure Analysis Of The Microbial
Transglutaminase
pdb|1IU4|B Chain B, Crystal Structure Analysis Of The Microbial
Transglutaminase
pdb|1IU4|C Chain C, Crystal Structure Analysis Of The Microbial
Transglutaminase
pdb|1IU4|D Chain D, Crystal Structure Analysis Of The Microbial
Transglutaminase
Length = 331
Score = 25.4 bits (54), Expect = 4.1
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 66 SASMDSLKVNLG---DELKNKNVKEAFFALFKNT 96
SA +D+LK L D L+N++ + F++ +NT
Sbjct: 144 SAYLDNLKKELANGNDALRNEDARSPFYSALRNT 177
>pdb|1FUX|B Chain B, Crystal Structure Of E.Coli Ybcl, A New Member Of The
Mammalian Pebp Family
pdb|1FUX|A Chain A, Crystal Structure Of E.Coli Ybcl, A New Member Of The
Mammalian Pebp Family
Length = 166
Score = 25.0 bits (53), Expect = 5.3
Identities = 14/53 (26%), Positives = 26/53 (48%)
Query: 65 ASASMDSLKVNLGDELKNKNVKEAFFALFKNTNIKVTFRNVIEGDHAGSLTAY 117
A + S ++ G++L +V F NT+ +T+ V EG + ++T Y
Sbjct: 1 AEFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVY 53
>pdb|2OCC|D Chain D, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2OCC|Q Chain Q, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1OCR|D Chain D, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCR|Q Chain Q, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCO|D Chain D, Bovine Heart Cytochrome C Oxidase In Carbon
Monoxide-Bound State
pdb|1OCO|Q Chain Q, Bovine Heart Cytochrome C Oxidase In Carbon
Monoxide-Bound State
pdb|1OCC|D Chain D, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCC|Q Chain Q, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCZ|D Chain D, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|1OCZ|Q Chain Q, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
Length = 147
Score = 25.0 bits (53), Expect = 5.3
Identities = 15/41 (36%), Positives = 21/41 (50%)
Query: 57 SLKTLLEGASASMDSLKVNLGDELKNKNVKEAFFALFKNTN 97
S K L E AS SL ++ EL KE+F + ++TN
Sbjct: 36 SQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTN 76
>pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|D Chain D, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|A Chain A, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|C Chain C, Structure Of Gamma-Glutamyl Hydrolase
Length = 315
Score = 24.6 bits (52), Expect = 7.0
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 58 LKTLLEGASASMDSLKVNLGDELKNKNVKEAFFALFKNTNIKVTFRNVIEG 108
L +E +A+ +++ + N+ +K+ F L NT+ K+ F + +EG
Sbjct: 180 LSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEG 230
>pdb|1KXR|B Chain B, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
pdb|1KXR|A Chain A, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
Length = 339
Score = 24.6 bits (52), Expect = 7.0
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 29 WTAFKTKAKTPVNGSFESITYKLGKSQDSLKTLLEGASASMDSLKVNLGDELKNKNVKEA 88
W+A KA VNGS+E+++ G + ++ + G + D K E
Sbjct: 162 WSALLEKAYAKVNGSYEALSG--GCTSEAFEDFTGGVTEWYDLQKAPSDLYQIILKALER 219
Query: 89 FFALFKNTNIK-------VTFRNVIEGDHAGSLT 115
L + NI +TF+N++ G HA S+T
Sbjct: 220 GSLLGCSINISDIRDLEAITFKNLVRG-HAYSVT 252
>pdb|1E8O|A Chain A, Core Of The Alu Domain Of The Mammalian Srp
pdb|1E8O|C Chain C, Core Of The Alu Domain Of The Mammalian Srp
pdb|1E8S|A Chain A, Alu Domain Of The Mammalian Srp (Potential Alu
Retroposition Intermediate)
Length = 85
Score = 24.3 bits (51), Expect = 9.1
Identities = 13/44 (29%), Positives = 22/44 (49%)
Query: 126 KVPMQYTIAEDKIVVKGVLDLLNFGLKNELASLAKRCESFHEGL 169
+V ++Y ++ + VK DL+ K + A K+ E FH L
Sbjct: 25 RVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFHSQL 68
>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase
pdb|2PHM|A Chain A, Structure Of Phenylalanine Hydroxylase Dephosphorylated
Length = 429
Score = 24.3 bits (51), Expect = 9.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 120 MNEKLVKVPMQYTIAEDKIVVKGVLDLLNFGLKNELASLAKRCESFHE 167
++ KL + + ED G + L+ F LK E+ +LAK F E
Sbjct: 11 LSRKLSDFGQETSYIEDNSNQNGAISLI-FSLKEEVGALAKVLRLFEE 57
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.132 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 915,365
Number of Sequences: 13198
Number of extensions: 33208
Number of successful extensions: 75
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 10
length of query: 184
length of database: 2,899,336
effective HSP length: 83
effective length of query: 101
effective length of database: 1,803,902
effective search space: 182194102
effective search space used: 182194102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)