BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644934|ref|NP_207104.1| glutamate-1-semialdehyde
2,1-aminomutase (hemL) [Helicobacter pylori 26695]
(430 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semial... 394 e-110
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2... 115 1e-26
pdb|1DGD| Dialkylglycine Decarboxylase (Pyruvate) (Dgd) (... 115 1e-26
pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxyla... 112 1e-25
pdb|2DKB| 2,2-Dialkylglycine Decarboxylase (Pyruvate) (Dg... 107 3e-24
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed Wi... 102 1e-22
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Comple... 102 1e-22
pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine... 57 3e-09
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargo... 57 5e-09
pdb|1GTX|A Chain A, 4-Aminobutyrate-Aminotransferase From P... 37 0.006
pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotryp... 31 0.24
pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vi... 27 4.4
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-S... 27 4.4
pdb|1BCH|1 Chain 1, Mannose-Binding Protein-A Mutant (Qpdwg... 26 7.6
pdb|1AFB|1 Chain 1, C-Type Lectin, Calcium-Binding Protein ... 26 7.6
pdb|1QNT|A Chain A, X-Ray Structure Of Human O6alkylguanine... 26 7.6
pdb|1KX0|A Chain A, Rat Mannose Protein A (H189v I207v) Com... 26 7.6
pdb|1EH6|A Chain A, Human O6-Alkylguanine-Dna Alkyltransferase 26 7.6
pdb|1BUU|A Chain A, One Ho3+ Form Of Rat Mannose-Binding Pr... 26 7.6
pdb|1FIH|A Chain A, N-Acetylgalactosamine Binding Mutant Of... 26 7.6
pdb|1KWT|A Chain A, Rat Mannose Binding Protein A (Native, ... 26 7.6
pdb|1KWZ|A Chain A, Rat Mannose Protein A (H189v) Complexed... 26 7.6
pdb|1EH8|A Chain A, Benzylated Human O6-Alkylguanine-Dna Al... 26 7.6
pdb|3KMB|1 Chain 1, Complex Of 3'-Sulfo-Lewis-X With A Sele... 26 7.6
pdb|1BCJ|1 Chain 1, Mannose-Binding Protein-A Mutant (Qpdwg... 26 7.6
pdb|1J6N|A Chain A, Crystal Structure Of Cysteine Synthase ... 26 9.9
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 394 bits (1012), Expect = e-110
Identities = 206/412 (50%), Positives = 272/412 (66%), Gaps = 3/412 (0%)
Query: 10 FNEAKQVIAGGVNSPVRAFKSVKGTPPFILKGKGAYLYDVDNNHYIDFVQSWGPLIFGHA 69
F A++++ GGV+SPVRAFKSV G P + K AY +DVD N YID+V +WGP I GHA
Sbjct: 15 FAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHA 74
Query: 70 DEEIEENIINALKKGTSFGAPTELETTLAKEIISCYEGLDKVRLVSSGTEATMSAIRLAR 129
E+ E + A++KGTSFGAP LE LA+ + ++ VR V+SGTEA M+ +RL R
Sbjct: 75 HPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMR 134
Query: 130 AYSQKDDLIKFEGCYHGHSDSLLVKAGSGCATFGSPSSLGVPNDFSKHTLVARYNDLNST 189
AY+ +D +IKFEGCYHGH+D LVKAGSG AT G PSS GVP + +TL YNDL +
Sbjct: 135 AYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAV 194
Query: 190 EECFKK--GNVGCVIIEPIAGNMGLVPAQKEFLLGLKALCEKYQAVLILDEVMSGFRASL 247
+ F + G + VI+EPI GN G + FL GL+ + ++ A+L+ DEVM+GFR +
Sbjct: 195 KALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAY 254
Query: 248 SGSQEFYGVVPDLVTFGKVIGAGLPLACFGGRAEIMDLLSPIGSVYQAGTLSGNPLAVCA 307
G QE +GV PDL T GK+IG GLP+ +GG+ EIM L++P G +YQAGTLSGNPLA+ A
Sbjct: 255 GGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTA 314
Query: 308 GLSALYKIKRDKTLYTRLDALAIRLTQGLQKSAQNYNIALETLNMGSMFGFFFNENAVHD 367
G+ L +++ T Y LD + RL+ GL AQ A + MFGFFF E VH+
Sbjct: 315 GIKTLELLRQPGT-YEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHN 373
Query: 368 FDDALKSDTEMFAKFHQKMLFKGVYLACSSFETGFICEPMTEEMIDLTIAKA 419
++DA KSD + F++FH+ ML +G+YLA S FE GF TEE ID T+A A
Sbjct: 374 YEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAA 425
>pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 115 bits (287), Expect = 1e-26
Identities = 94/342 (27%), Positives = 153/342 (44%), Gaps = 24/342 (7%)
Query: 35 PPFILKGKGAYLYDVDNNHYIDFVQSWGPLIFGHADEEIEENI------INALKKGTSFG 88
P I + KG+++YD D +DF + GH EI I ++ L G
Sbjct: 26 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLSR 85
Query: 89 APTELETTLAKEIISCYEGLDKVRLVSSGTEATMSAIRLARAYSQKDDLIKFEGCYHGHS 148
+L T LA GLD+ L+S+G E+ +AIR+A+ + K +++ F +HG +
Sbjct: 86 PVVDLATRLAN---ITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMT 142
Query: 149 DSLLVKAGSGCATFGSPSSLG---VPNDFSKHTLVAR---YNDLNSTEECF------KKG 196
+ S P+++G +P F+ R Y+ L + F G
Sbjct: 143 GAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSG 202
Query: 197 NVGCVIIEPIAGNMGLVPAQKEFLLGLKALCEKYQAVLILDEVMSGF-RASLSGSQEFYG 255
N+ I EPI + G++ ++ LK CE +LILDE +G R + + G
Sbjct: 203 NLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDG 262
Query: 256 VVPDLVTFGKVIGAGLPLACFGGRAEIMDLLSPIGSVYQAGTLSGNPLAVCAGLSALYKI 315
V PD++T K +GAGLPLA A I + +G ++ +S +PL GL L +
Sbjct: 263 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVS-DPLPAAVGLRVLDVV 321
Query: 316 KRDKTLYTRLDALAIRLTQGLQKSAQNYNIALETLNMGSMFG 357
+RD L R + + RL +GL + ++ + G + G
Sbjct: 322 QRD-GLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLG 362
>pdb|1DGD| Dialkylglycine Decarboxylase (Pyruvate) (Dgd) (E.C.4.1.1.64)
Mutant With Gln 15 Replaced By His (Q15h) Complexed With
Lithium+ In Metal-Binding Site 1
pdb|1DGE| Dialkylglycine Decarboxylase (Pyruvate) (Dgd) (E.C.4.1.1.64)
Mutant With Gln 15 Replaced By His (Q15h) Complexed With
Rubidium+ In Metal-Binding Sites I And 2
Length = 432
Score = 115 bits (287), Expect = 1e-26
Identities = 94/342 (27%), Positives = 153/342 (44%), Gaps = 24/342 (7%)
Query: 35 PPFILKGKGAYLYDVDNNHYIDFVQSWGPLIFGHADEEIEENI------INALKKGTSFG 88
P I + KG+++YD D +DF + GH EI I ++ L G
Sbjct: 25 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLSR 84
Query: 89 APTELETTLAKEIISCYEGLDKVRLVSSGTEATMSAIRLARAYSQKDDLIKFEGCYHGHS 148
+L T LA GLD+ L+S+G E+ +AIR+A+ + K +++ F +HG +
Sbjct: 85 PVVDLATRLAN---ITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMT 141
Query: 149 DSLLVKAGSGCATFGSPSSLG---VPNDFSKHTLVAR---YNDLNSTEECF------KKG 196
+ S P+++G +P F+ R Y+ L + F G
Sbjct: 142 GAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSG 201
Query: 197 NVGCVIIEPIAGNMGLVPAQKEFLLGLKALCEKYQAVLILDEVMSGF-RASLSGSQEFYG 255
N+ I EPI + G++ ++ LK CE +LILDE +G R + + G
Sbjct: 202 NLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDG 261
Query: 256 VVPDLVTFGKVIGAGLPLACFGGRAEIMDLLSPIGSVYQAGTLSGNPLAVCAGLSALYKI 315
V PD++T K +GAGLPLA A I + +G ++ +S +PL GL L +
Sbjct: 262 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVS-DPLPAAVGLRVLDVV 320
Query: 316 KRDKTLYTRLDALAIRLTQGLQKSAQNYNIALETLNMGSMFG 357
+RD L R + + RL +GL + ++ + G + G
Sbjct: 321 QRD-GLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLG 361
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
Length = 433
Score = 112 bits (279), Expect = 1e-25
Identities = 93/342 (27%), Positives = 152/342 (44%), Gaps = 24/342 (7%)
Query: 35 PPFILKGKGAYLYDVDNNHYIDFVQSWGPLIFGHADEEIEENI------INALKKGTSFG 88
P I + KG+++YD D +DF + GH EI I ++ L
Sbjct: 26 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 85
Query: 89 APTELETTLAKEIISCYEGLDKVRLVSSGTEATMSAIRLARAYSQKDDLIKFEGCYHGHS 148
+L T LA GLD+ L+S+G E+ +AIR+A+ + K +++ F +HG +
Sbjct: 86 PVVDLATRLAN---ITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMT 142
Query: 149 DSLLVKAGSGCATFGSPSSLG---VPNDFSKHTLVAR---YNDLNSTEECF------KKG 196
+ S P+++G +P F+ R Y+ L + F G
Sbjct: 143 GAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSG 202
Query: 197 NVGCVIIEPIAGNMGLVPAQKEFLLGLKALCEKYQAVLILDEVMSGF-RASLSGSQEFYG 255
N+ I EPI + G++ ++ LK CE +LILDE +G R + + G
Sbjct: 203 NLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDG 262
Query: 256 VVPDLVTFGKVIGAGLPLACFGGRAEIMDLLSPIGSVYQAGTLSGNPLAVCAGLSALYKI 315
V PD++T K +GAGLPLA A I + +G ++ +S +PL GL L +
Sbjct: 263 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVS-DPLPAAVGLRVLDVV 321
Query: 316 KRDKTLYTRLDALAIRLTQGLQKSAQNYNIALETLNMGSMFG 357
+RD L R + + RL +GL + ++ + G + G
Sbjct: 322 QRD-GLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLG 362
>pdb|2DKB| 2,2-Dialkylglycine Decarboxylase (Pyruvate) (Dgd) (E.C.4.1.1.64)
pdb|1DKA| 2,2-Dialkylglycine Decarboxylase (Pyruvate) (E.C.4.1.1.64)
Length = 432
Score = 107 bits (267), Expect = 3e-24
Identities = 93/343 (27%), Positives = 152/343 (44%), Gaps = 25/343 (7%)
Query: 35 PPFILKGKGAYLYDVDNNHYIDFVQSWGPLIFGHADEEIEENI------INALKKGTSFG 88
P I + KG+++YD D +DF + GH EI I ++ L
Sbjct: 24 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 83
Query: 89 APTELETTLAKEIISCYEGLDKVRLVSSGTEATMSAIRLARAYSQKDDLIKFEGCYHGHS 148
+L T LA GLD+ L+S+G E+ +AIR+A+ + K +++ F +HG +
Sbjct: 84 PVVDLATRLAN---ITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMT 140
Query: 149 DSLLVKAGSGCATFGSPSSLG---VPNDFSKHTLVAR---YNDLNSTEECF------KKG 196
+ S P+++G +P F+ R Y+ L + F G
Sbjct: 141 GAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSG 200
Query: 197 NVGCVIIEPIAGNMGLVPAQKEFLLGLKALCEKYQAVLILDEVMSGF-RASLSGSQEFYG 255
N+ I EPI + G++ ++ LK CE +LILDE +G R + + G
Sbjct: 201 NLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDG 260
Query: 256 VVPDLVTFGK-VIGAGLPLACFGGRAEIMDLLSPIGSVYQAGTLSGNPLAVCAGLSALYK 314
V PD++T K +GAGLPLA A I + +G ++ +S +PL GL L
Sbjct: 261 VTPDILTLSKXTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVS-DPLPAAVGLRVLDV 319
Query: 315 IKRDKTLYTRLDALAIRLTQGLQKSAQNYNIALETLNMGSMFG 357
++RD L R + + RL +GL + ++ + G + G
Sbjct: 320 VQRD-GLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLG 361
>pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
Length = 439
Score = 102 bits (253), Expect = 1e-22
Identities = 85/314 (27%), Positives = 142/314 (45%), Gaps = 20/314 (6%)
Query: 35 PPFILKGKGAYLYDVDNNHYIDFVQSWGPLIFGHADEEIEENIINALKKGTSFGAPTELE 94
P + +GKG YL+DV+ Y DF+ S+ + GH +I +NALK + T
Sbjct: 59 PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKI----VNALK--SQVDKLTLTS 112
Query: 95 TTLAKEIISCYE-------GLDKVRLVSSGTEATMSAIRLARAYSQK-DDLIKFEGCYHG 146
++ YE KV +++G EA +A +LAR + + K++
Sbjct: 113 RAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVF 172
Query: 147 HSDSLLVKAGSGCATFGSPSSLGVPNDFSKHTLVARYNDLNSTEECFKKGNVGCVIIEPI 206
+ + + S ++ P+S F + YNDL + E + NV ++EPI
Sbjct: 173 AAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPI 232
Query: 207 AGNMGLVPAQKEFLLGLKALCEKYQAVLILDEVMSGF-RASLSGSQEFYGVVPDLVTFGK 265
G G+V +L+G++ LC ++Q + I DE+ +G R + ++ V PD+V GK
Sbjct: 233 QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGK 292
Query: 266 VIGAGL-PLACFGGRAEIMDLLSPIGSVYQAGTLSGNPLAVCAGLSALYKIKRDKTLYTR 324
+ GL P++ +IM + P T GNPL ++AL ++ ++ L
Sbjct: 293 ALSGGLYPVSAVLCDDDIMLTIKP---GEHGSTYGGNPLGCRVAIAAL-EVLEEENLAEN 348
Query: 325 LDALAIRLTQGLQK 338
D L I L L K
Sbjct: 349 ADKLGIILRNELMK 362
>pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
Length = 402
Score = 102 bits (253), Expect = 1e-22
Identities = 85/314 (27%), Positives = 142/314 (45%), Gaps = 20/314 (6%)
Query: 35 PPFILKGKGAYLYDVDNNHYIDFVQSWGPLIFGHADEEIEENIINALKKGTSFGAPTELE 94
P + +GKG YL+DV+ Y DF+ S+ + GH +I +NALK + T
Sbjct: 22 PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKI----VNALK--SQVDKLTLTS 75
Query: 95 TTLAKEIISCYE-------GLDKVRLVSSGTEATMSAIRLARAYSQK-DDLIKFEGCYHG 146
++ YE KV +++G EA +A +LAR + + K++
Sbjct: 76 RAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVF 135
Query: 147 HSDSLLVKAGSGCATFGSPSSLGVPNDFSKHTLVARYNDLNSTEECFKKGNVGCVIIEPI 206
+ + + S ++ P+S F + YNDL + E + NV ++EPI
Sbjct: 136 AAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPI 195
Query: 207 AGNMGLVPAQKEFLLGLKALCEKYQAVLILDEVMSGF-RASLSGSQEFYGVVPDLVTFGK 265
G G+V +L+G++ LC ++Q + I DE+ +G R + ++ V PD+V GK
Sbjct: 196 QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGK 255
Query: 266 VIGAGL-PLACFGGRAEIMDLLSPIGSVYQAGTLSGNPLAVCAGLSALYKIKRDKTLYTR 324
+ GL P++ +IM + P T GNPL ++AL ++ ++ L
Sbjct: 256 ALSGGLYPVSAVLCDDDIMLTIKP---GEHGSTYGGNPLGCRVAIAAL-EVLEEENLAEN 311
Query: 325 LDALAIRLTQGLQK 338
D L I L L K
Sbjct: 312 ADKLGIILRNELMK 325
>pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-
Oxonanoate Aminotransferase With Pyridoxal Phosphate
Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of Adenosylmethionine-8-Amino-7-
Oxonanoate Aminotransferase With Pyridoxal Phosphate
Cofactor
Length = 429
Score = 57.4 bits (137), Expect = 3e-09
Identities = 74/303 (24%), Positives = 126/303 (41%), Gaps = 35/303 (11%)
Query: 38 ILKGKGAYLYDVDNNHYIDFVQSWGPLIFGHADEEIE---ENIINALKKGTSFGAPTELE 94
++ +G L D +D + SW I G+ ++ ++ I+A+ FG T
Sbjct: 29 VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSH-VMFGEITHAP 87
Query: 95 TT-LAKEIISCY-EGLDKVRLVSSGTEATMSAIRLARAY-----SQKDDLIKFEGCYHGH 147
L +++++ + L+ V L SG+ A A+++A Y +D + F YHG
Sbjct: 88 AIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWDAKGEARDRFLTFRNGYHGD 147
Query: 148 SDSLLVKAGSGCATFGSPSSLGVPNDFSKHTLVARYNDLNSTEECFKKGNVG-------- 199
+ + S C S SL + L A E ++ VG
Sbjct: 148 TFGAM----SVCDPDNSMHSLW--KGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH 201
Query: 200 -----CVIIEPIA-GNMGLVPAQKEFLLGLKALCEKYQAVLILDEVMSGF-RASLSGSQE 252
VIIEPI G G+ E+L ++ +C++ +LI DE+ +GF R + E
Sbjct: 202 RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACE 261
Query: 253 FYGVVPDLVTFGKVI-GAGLPLACFGGRAEIMDLLS--PIGSVYQAGTLSGNPLAVCAGL 309
+ PD++ GK + G + L+ E+ + +S G T GNPLA A
Sbjct: 262 HAEIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNPLACAAAN 321
Query: 310 SAL 312
++L
Sbjct: 322 ASL 324
>pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
Length = 429
Score = 56.6 bits (135), Expect = 5e-09
Identities = 72/302 (23%), Positives = 124/302 (40%), Gaps = 33/302 (10%)
Query: 38 ILKGKGAYLYDVDNNHYIDFVQSWGPLIFGHADEEIE---ENIINALKKGTSFGAPTELE 94
++ +G L D +D + SW I G+ ++ ++ I+A+ G
Sbjct: 29 VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPA 88
Query: 95 TTLAKEIISCY-EGLDKVRLVSSGTEATMSAIRLARAYSQ-----KDDLIKFEGCYHGHS 148
L +++++ + L+ V L SG+ A A+++A Y Q + + F YHG +
Sbjct: 89 IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDT 148
Query: 149 DSLLVKAGSGCATFGSPSSLGVPNDFSKHTLVARYNDLNSTEECFKKGNVG--------- 199
+ S C S SL + L A E ++ VG
Sbjct: 149 FGAM----SVCDPDNSMHSLW--KGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR 202
Query: 200 ----CVIIEPIA-GNMGLVPAQKEFLLGLKALCEKYQAVLILDEVMSGF-RASLSGSQEF 253
VIIEPI G G+ E+L ++ +C++ +LI DE+ +GF R + E
Sbjct: 203 HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEH 262
Query: 254 YGVVPDLVTFGKVI-GAGLPLACFGGRAEIMDLLS--PIGSVYQAGTLSGNPLAVCAGLS 310
+ PD++ GK + G + L+ E+ + +S G T GNPLA A +
Sbjct: 263 AEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANA 322
Query: 311 AL 312
+L
Sbjct: 323 SL 324
>pdb|1GTX|A Chain A, 4-Aminobutyrate-Aminotransferase From Pig
pdb|1GTX|B Chain B, 4-Aminobutyrate-Aminotransferase From Pig
pdb|1GTX|C Chain C, 4-Aminobutyrate-Aminotransferase From Pig
pdb|1GTX|D Chain D, 4-Aminobutyrate-Aminotransferase From Pig
Length = 472
Score = 36.6 bits (83), Expect = 0.006
Identities = 58/284 (20%), Positives = 101/284 (35%), Gaps = 53/284 (18%)
Query: 40 KGKGAYLYDVDNNHYIDFVQSWGPLIFGHADEEI-----------------------EEN 76
+ +G YL DVD N +D + G++ + EN
Sbjct: 51 ESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPEN 110
Query: 77 IINALKKGTSFGAPTELETTLAKEIISCYEG----------LDKVRLVSSGTEATMSAIR 126
+ L++ AP + + SC K R S+ ++ +
Sbjct: 111 FVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCM 170
Query: 127 LARAYSQKD-DLIKFEGCYHGHSDSLLVKAGSGCA------TFGSPSS----LGVP-NDF 174
+ +A D ++ F G +HG + L S +F P + L P +F
Sbjct: 171 INQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEF 230
Query: 175 SKHTLVARYNDLNSTEECF-----KKGNVGCVIIEPIAGNMGLVPAQKEFLLGLKALCEK 229
K L E+ KK V +I+EPI G A +F L+ + K
Sbjct: 231 VKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK 290
Query: 230 YQAVLILDEVMSGFRAS-LSGSQEFYGV--VPDLVTFGKVIGAG 270
+ ++DEV +G ++ + E +G+ D++TF K + G
Sbjct: 291 HGCAFLVDEVQTGGGSTGKFWAHEHWGLDDAADVMTFSKKMMTG 334
>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
pdb|1EQ9|B Chain B, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
Length = 222
Score = 31.2 bits (69), Expect = 0.24
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 141 EGCYHGHSDSLLVKAGS--GCATFGSPSSLGVPNDFSK 176
EG HG S LV G+ G +FGSP +LG P+ +++
Sbjct: 171 EGACHGDSGGPLVANGAQIGIVSFGSPCALGEPDVYTR 208
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 26.9 bits (58), Expect = 4.4
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 186 LNSTEECFKKGNV--GCVIIEPIAGNMGLVPAQKEFLLGLKALCEKYQAVLILDEVMS 241
L E+ + G + G IIEP +GN G+ L L A Y+ ++++ E MS
Sbjct: 81 LRMIEDAERDGTLKPGDTIIEPTSGNTGIG-------LALAAAVRGYRCIIVMPEKMS 131
>pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
Length = 435
Score = 26.9 bits (58), Expect = 4.4
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 186 LNSTEECFKKGNV--GCVIIEPIAGNMGLVPAQKEFLLGLKALCEKYQAVLILDEVMS 241
L E+ + G + G IIEP +GN G+ L L A Y+ ++++ E MS
Sbjct: 146 LRMIEDAERDGTLKPGDTIIEPTSGNTGIG-------LALAAAVRGYRCIIVMPEKMS 196
>pdb|1BCH|1 Chain 1, Mannose-Binding Protein-A Mutant (Qpdwgh) Complexed With
N-Acetyl-D-Galactosamine
pdb|1BCH|2 Chain 2, Mannose-Binding Protein-A Mutant (Qpdwgh) Complexed With
N-Acetyl-D-Galactosamine
pdb|1BCH|3 Chain 3, Mannose-Binding Protein-A Mutant (Qpdwgh) Complexed With
N-Acetyl-D-Galactosamine
Length = 154
Score = 26.2 bits (56), Expect = 7.6
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 363 NAVHDFDDALKSDTEMFAKFHQKMLFKGVYLACSSFETGFICEPMTEE 410
N +H F KS + F H++M F V CS G + P E
Sbjct: 24 NKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELR-GTVAIPRNAE 70
>pdb|1AFB|1 Chain 1, C-Type Lectin, Calcium-Binding Protein Mol_id: 1;
Molecule: Mannose-Binding Protein-A; Chain: 1, 2, 3;
Fragment: Clostripain Fragment (Residues 73 - 226);
Synonym: Cl-Qpdwg; Engineered: Yes; Mutation: E185q,
N187d, H189w, G190y, S191g, Ins(H192, G193, L194, G195,
G196); Heterogen: N-Acetyl-D-Galactosamine;
Other_details: Ph 8.0, Data Collected At 100k, 20%
2-Methyl,2-4 Pentanediol (Cryoprotectant)
pdb|1AFB|2 Chain 2, C-Type Lectin, Calcium-Binding Protein Mol_id: 1;
Molecule: Mannose-Binding Protein-A; Chain: 1, 2, 3;
Fragment: Clostripain Fragment (Residues 73 - 226);
Synonym: Cl-Qpdwg; Engineered: Yes; Mutation: E185q,
N187d, H189w, G190y, S191g, Ins(H192, G193, L194, G195,
G196); Heterogen: N-Acetyl-D-Galactosamine;
Other_details: Ph 8.0, Data Collected At 100k, 20%
2-Methyl,2-4 Pentanediol (Cryoprotectant)
pdb|1AFB|3 Chain 3, C-Type Lectin, Calcium-Binding Protein Mol_id: 1;
Molecule: Mannose-Binding Protein-A; Chain: 1, 2, 3;
Fragment: Clostripain Fragment (Residues 73 - 226);
Synonym: Cl-Qpdwg; Engineered: Yes; Mutation: E185q,
N187d, H189w, G190y, S191g, Ins(H192, G193, L194, G195,
G196); Heterogen: N-Acetyl-D-Galactosamine;
Other_details: Ph 8.0, Data Collected At 100k, 20%
2-Methyl,2-4 Pentanediol (Cryoprotectant)
pdb|1AFA|1 Chain 1, C-Type Lectin, Calcium-Binding Protein Mol_id: 1;
Molecule: Mannose-Binding Protein-A; Chain: 1, 2, 3;
Fragment: Clostripain Fragment (Residues 73 - 226);
Synonym: Cl-Qpdwg; Engineered: Yes; Mutation: E185q,
N187d, H189w, G190y, S191g, Ins(H192, G193, L194, G195,
G196); Heterogen: Beta-Methyl-D-Galactoside;
Other_details: Ph 8.0, Data Collected At 100k, 20%
2-Methyl,2-4 Pentanediol (Cryoprotectant)
pdb|1AFA|2 Chain 2, C-Type Lectin, Calcium-Binding Protein Mol_id: 1;
Molecule: Mannose-Binding Protein-A; Chain: 1, 2, 3;
Fragment: Clostripain Fragment (Residues 73 - 226);
Synonym: Cl-Qpdwg; Engineered: Yes; Mutation: E185q,
N187d, H189w, G190y, S191g, Ins(H192, G193, L194, G195,
G196); Heterogen: Beta-Methyl-D-Galactoside;
Other_details: Ph 8.0, Data Collected At 100k, 20%
2-Methyl,2-4 Pentanediol (Cryoprotectant)
pdb|1AFA|3 Chain 3, C-Type Lectin, Calcium-Binding Protein Mol_id: 1;
Molecule: Mannose-Binding Protein-A; Chain: 1, 2, 3;
Fragment: Clostripain Fragment (Residues 73 - 226);
Synonym: Cl-Qpdwg; Engineered: Yes; Mutation: E185q,
N187d, H189w, G190y, S191g, Ins(H192, G193, L194, G195,
G196); Heterogen: Beta-Methyl-D-Galactoside;
Other_details: Ph 8.0, Data Collected At 100k, 20%
2-Methyl,2-4 Pentanediol (Cryoprotectant)
pdb|1AFD|1 Chain 1, C-Type Lectin, Calcium-Binding Protein Mol_id: 1;
Molecule: Mannose-Binding Protein-A; Chain: 1, 2, 3;
Fragment: Clostripain Fragment (Residues 73 - 226);
Synonym: Cl-Qpdwg; Engineered: Yes; Mutation: E185q,
N187d, H189w, G190y, S191g, Ins(H192, G193, L194, G195,
G196); Other_details: Ph 8.0, Data Collected At 100k,
20% 2-Methyl,2-4 Pentanediol (Cryoprotectant)
pdb|1AFD|2 Chain 2, C-Type Lectin, Calcium-Binding Protein Mol_id: 1;
Molecule: Mannose-Binding Protein-A; Chain: 1, 2, 3;
Fragment: Clostripain Fragment (Residues 73 - 226);
Synonym: Cl-Qpdwg; Engineered: Yes; Mutation: E185q,
N187d, H189w, G190y, S191g, Ins(H192, G193, L194, G195,
G196); Other_details: Ph 8.0, Data Collected At 100k,
20% 2-Methyl,2-4 Pentanediol (Cryoprotectant)
pdb|1AFD|3 Chain 3, C-Type Lectin, Calcium-Binding Protein Mol_id: 1;
Molecule: Mannose-Binding Protein-A; Chain: 1, 2, 3;
Fragment: Clostripain Fragment (Residues 73 - 226);
Synonym: Cl-Qpdwg; Engineered: Yes; Mutation: E185q,
N187d, H189w, G190y, S191g, Ins(H192, G193, L194, G195,
G196); Other_details: Ph 8.0, Data Collected At 100k,
20% 2-Methyl,2-4 Pentanediol (Cryoprotectant)
Length = 154
Score = 26.2 bits (56), Expect = 7.6
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 363 NAVHDFDDALKSDTEMFAKFHQKMLFKGVYLACSSFETGFICEPMTEE 410
N +H F KS + F H++M F V CS G + P E
Sbjct: 24 NKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELR-GTVAIPRNAE 70
>pdb|1QNT|A Chain A, X-Ray Structure Of Human O6alkylguanine-Dna
Alkyltransferase
Length = 176
Score = 26.2 bits (56), Expect = 7.6
Identities = 12/31 (38%), Positives = 20/31 (63%), Gaps = 1/31 (3%)
Query: 91 TELETTLAK-EIISCYEGLDKVRLVSSGTEA 120
T L++ L K E+ C +GL +++L+ GT A
Sbjct: 10 TTLDSPLGKLELSGCEQGLHEIKLLGKGTSA 40
>pdb|1KX0|A Chain A, Rat Mannose Protein A (H189v I207v) Complexed With
Man-A13- Man
pdb|1KX0|B Chain B, Rat Mannose Protein A (H189v I207v) Complexed With
Man-A13- Man
pdb|1KX0|C Chain C, Rat Mannose Protein A (H189v I207v) Complexed With
Man-A13- Man
Length = 149
Score = 26.2 bits (56), Expect = 7.6
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 363 NAVHDFDDALKSDTEMFAKFHQKMLFKGVYLACSSFETGFICEPMTEE 410
N +H F KS + F H++M F V CS G + P E
Sbjct: 24 NKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELR-GTVAIPRNAE 70
>pdb|1EH6|A Chain A, Human O6-Alkylguanine-Dna Alkyltransferase
Length = 207
Score = 26.2 bits (56), Expect = 7.6
Identities = 12/31 (38%), Positives = 20/31 (63%), Gaps = 1/31 (3%)
Query: 91 TELETTLAK-EIISCYEGLDKVRLVSSGTEA 120
T L++ L K E+ C +GL +++L+ GT A
Sbjct: 10 TTLDSPLGKLELSGCEQGLHEIKLLGKGTSA 40
>pdb|1BUU|A Chain A, One Ho3+ Form Of Rat Mannose-Binding Protein A
Length = 168
Score = 26.2 bits (56), Expect = 7.6
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 363 NAVHDFDDALKSDTEMFAKFHQKMLFKGVYLACSSFETGFICEPMTEE 410
N +H F KS + F H++M F V CS G + P E
Sbjct: 43 NKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELR-GTVAIPRNAE 89
>pdb|1FIH|A Chain A, N-Acetylgalactosamine Binding Mutant Of Mannose-Binding
Protein A (Qpdwg-Hdrpy), Complex With
N-Acetylgalactosamine
pdb|1FIH|B Chain B, N-Acetylgalactosamine Binding Mutant Of Mannose-Binding
Protein A (Qpdwg-Hdrpy), Complex With
N-Acetylgalactosamine
pdb|1FIH|C Chain C, N-Acetylgalactosamine Binding Mutant Of Mannose-Binding
Protein A (Qpdwg-Hdrpy), Complex With
N-Acetylgalactosamine
pdb|1FIF|A Chain A, N-Acetylgalactosamine-Selective Mutant Of Mannose-Binding
Protein-A (Qpdwg-Hdrpy)
pdb|1FIF|B Chain B, N-Acetylgalactosamine-Selective Mutant Of Mannose-Binding
Protein-A (Qpdwg-Hdrpy)
pdb|1FIF|C Chain C, N-Acetylgalactosamine-Selective Mutant Of Mannose-Binding
Protein-A (Qpdwg-Hdrpy)
Length = 154
Score = 26.2 bits (56), Expect = 7.6
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 363 NAVHDFDDALKSDTEMFAKFHQKMLFKGVYLACSSFETGFICEPMTEE 410
N +H F KS + F H++M F V CS G + P E
Sbjct: 24 NKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELR-GTVAIPRNAE 70
>pdb|1KWT|A Chain A, Rat Mannose Binding Protein A (Native, Mpd)
pdb|1KWT|B Chain B, Rat Mannose Binding Protein A (Native, Mpd)
pdb|1KWT|C Chain C, Rat Mannose Binding Protein A (Native, Mpd)
pdb|1KWU|A Chain A, Rat Mannose Binding Protein A Complexed With A-Me-Man
pdb|1KWU|B Chain B, Rat Mannose Binding Protein A Complexed With A-Me-Man
pdb|1KWU|C Chain C, Rat Mannose Binding Protein A Complexed With A-Me-Man
pdb|1KWV|A Chain A, Rat Mannose Binding Protein A Complexed With A-Me-Glcnac
pdb|1KWV|B Chain B, Rat Mannose Binding Protein A Complexed With A-Me-Glcnac
pdb|1KWV|C Chain C, Rat Mannose Binding Protein A Complexed With A-Me-Glcnac
pdb|1KWW|A Chain A, Rat Mannose Protein A Complexed With A-Me-Fuc.
pdb|1KWW|B Chain B, Rat Mannose Protein A Complexed With A-Me-Fuc.
pdb|1KWW|C Chain C, Rat Mannose Protein A Complexed With A-Me-Fuc.
pdb|1KWX|A Chain A, Rat Mannose Protein A Complexed With B-Me-Fuc.
pdb|1KWX|B Chain B, Rat Mannose Protein A Complexed With B-Me-Fuc.
pdb|1KWX|C Chain C, Rat Mannose Protein A Complexed With B-Me-Fuc.
pdb|1KWY|A Chain A, Rat Mannose Protein A Complexed With Man-A13-Man.
pdb|1KWY|B Chain B, Rat Mannose Protein A Complexed With Man-A13-Man.
pdb|1KWY|C Chain C, Rat Mannose Protein A Complexed With Man-A13-Man.
pdb|1KX1|A Chain A, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|B Chain B, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|C Chain C, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|D Chain D, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|E Chain E, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1KX1|F Chain F, Rat Mannose Protein A Complexed With Man6-Glcnac2-Asn
pdb|1RTM|1 Chain 1, Mannose-Binding Protein A (Clostripain Fragment)
(Cl-Mbp-A)
pdb|1RTM|2 Chain 2, Mannose-Binding Protein A (Clostripain Fragment)
(Cl-Mbp-A)
pdb|1RTM|3 Chain 3, Mannose-Binding Protein A (Clostripain Fragment)
(Cl-Mbp-A)
Length = 149
Score = 26.2 bits (56), Expect = 7.6
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 363 NAVHDFDDALKSDTEMFAKFHQKMLFKGVYLACSSFETGFICEPMTEE 410
N +H F KS + F H++M F V CS G + P E
Sbjct: 24 NKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELR-GTVAIPRNAE 70
>pdb|1KWZ|A Chain A, Rat Mannose Protein A (H189v) Complexed With Man-A13-Man
pdb|1KWZ|B Chain B, Rat Mannose Protein A (H189v) Complexed With Man-A13-Man
pdb|1KWZ|C Chain C, Rat Mannose Protein A (H189v) Complexed With Man-A13-Man
Length = 149
Score = 26.2 bits (56), Expect = 7.6
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 363 NAVHDFDDALKSDTEMFAKFHQKMLFKGVYLACSSFETGFICEPMTEE 410
N +H F KS + F H++M F V CS G + P E
Sbjct: 24 NKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELR-GTVAIPRNAE 70
>pdb|1EH8|A Chain A, Benzylated Human O6-Alkylguanine-Dna Alkyltransferase
pdb|1EH7|A Chain A, Methylated Human O6-Alkylguanine-Dna Alkyltransferase
Length = 207
Score = 26.2 bits (56), Expect = 7.6
Identities = 12/31 (38%), Positives = 20/31 (63%), Gaps = 1/31 (3%)
Query: 91 TELETTLAK-EIISCYEGLDKVRLVSSGTEA 120
T L++ L K E+ C +GL +++L+ GT A
Sbjct: 10 TTLDSPLGKLELSGCEQGLHEIKLLGKGTSA 40
>pdb|3KMB|1 Chain 1, Complex Of 3'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|3KMB|2 Chain 2, Complex Of 3'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|3KMB|3 Chain 3, Complex Of 3'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|2KMB|1 Chain 1, Complex Of 3'-Neuac-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|2KMB|2 Chain 2, Complex Of 3'-Neuac-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|2KMB|3 Chain 3, Complex Of 3'-Neuac-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|4KMB|1 Chain 1, Complex Of 4'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|4KMB|2 Chain 2, Complex Of 4'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|4KMB|3 Chain 3, Complex Of 4'-Sulfo-Lewis-X With A Selectin-Like Mutant Of
Mannose-Binding Protein A
pdb|1KMB|1 Chain 1, Selectin-Like Mutant Of Mannose-Binding Protein A
pdb|1KMB|2 Chain 2, Selectin-Like Mutant Of Mannose-Binding Protein A
pdb|1KMB|3 Chain 3, Selectin-Like Mutant Of Mannose-Binding Protein A
Length = 149
Score = 26.2 bits (56), Expect = 7.6
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 363 NAVHDFDDALKSDTEMFAKFHQKMLFKGVYLACSSFETGFICEPMTEE 410
N +H F KS + F H++M F V CS G + P E
Sbjct: 24 NKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELR-GTVAIPRNAE 70
>pdb|1BCJ|1 Chain 1, Mannose-Binding Protein-A Mutant (Qpdwghv) Complexed With
N-Acetyl-D-Galactosamine
pdb|1BCJ|2 Chain 2, Mannose-Binding Protein-A Mutant (Qpdwghv) Complexed With
N-Acetyl-D-Galactosamine
pdb|1BCJ|3 Chain 3, Mannose-Binding Protein-A Mutant (Qpdwghv) Complexed With
N-Acetyl-D-Galactosamine
Length = 154
Score = 26.2 bits (56), Expect = 7.6
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 363 NAVHDFDDALKSDTEMFAKFHQKMLFKGVYLACSSFETGFICEPMTEE 410
N +H F KS + F H++M F V CS G + P E
Sbjct: 24 NKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELR-GTVAIPRNAE 70
>pdb|1J6N|A Chain A, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
pdb|1J6N|B Chain B, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
pdb|1J6N|C Chain C, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
pdb|1J6N|D Chain D, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
Length = 303
Score = 25.8 bits (55), Expect = 9.9
Identities = 16/48 (33%), Positives = 27/48 (55%), Gaps = 7/48 (14%)
Query: 194 KKGNVGCVIIEPIAGNMGLVPAQKEFLLGLKALCEKYQAVLILDEVMS 241
K+G + I+EP +GNMG+ A ++G K ++ +L + E MS
Sbjct: 60 KRGLLKNGIVEPTSGNMGIAIA----MIGAK---RGHRVILTMPETMS 100
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,536,510
Number of Sequences: 13198
Number of extensions: 110607
Number of successful extensions: 262
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 27
length of query: 430
length of database: 2,899,336
effective HSP length: 91
effective length of query: 339
effective length of database: 1,698,318
effective search space: 575729802
effective search space used: 575729802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)