BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644935|ref|NP_207105.1| hypothetical protein
[Helicobacter pylori 26695]
(90 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1A7Q|H Chain H, Fv Fragment Of Mouse Monoclonal Antibod... 25 1.9
pdb|1DL7|H Chain H, The Structural Basis Of Repertoire Shif... 23 5.4
pdb|1ECP|A Chain A, Purine Nucleoside Phosphorylase >gi|163... 23 5.4
pdb|1K9S|A Chain A, Purine Nucleoside Phosphorylase From E.... 23 5.4
pdb|1FE8|H Chain H, Crystal Structure Of The Von Willebrand... 23 7.1
pdb|1LQT|A Chain A, A Covalent Modification Of Nadp+ Reveal... 23 7.1
pdb|1HLM| Hemoglobin (Cyano-Met) (Sea Cucumber) 22 9.2
>pdb|1A7Q|H Chain H, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) HIGH AFFINITY EXPRESSED VARIANT Containing
Ser26l->gly, Ile29l->thr, Glu81l->asp, Thr97l->ser,
Pro240h->leu, Asp258h->ala, Lys281h->glu, Asn283h->asp
And Leu312h->val
Length = 116
Score = 24.6 bits (52), Expect = 1.9
Identities = 19/69 (27%), Positives = 30/69 (42%), Gaps = 8/69 (11%)
Query: 20 SLGLSMVVAILMGVAIGYGLKKLTHI--SWLFWLGVIWGVLASFLNVYKAYKNMQKDYEE 77
S LS+ + GYG+ + + L WLG+IWG + AY + K
Sbjct: 15 SQSLSITCTVSGFSLTGYGVNWVRQLPGKGLEWLGMIWG------DGNTAYNSALKSRLS 68
Query: 78 LAKDPKYTQ 86
++KD +Q
Sbjct: 69 ISKDNSKSQ 77
>pdb|1DL7|H Chain H, The Structural Basis Of Repertoire Shift In An Immune
Response To Phosphocholine
Length = 112
Score = 23.1 bits (48), Expect = 5.4
Identities = 12/28 (42%), Positives = 17/28 (59%), Gaps = 1/28 (3%)
Query: 48 LFWLGVIWGVLASFLN-VYKAYKNMQKD 74
L WLG+IWG ++ N K+ N+ KD
Sbjct: 45 LEWLGMIWGDGSTDYNSALKSRLNISKD 72
>pdb|1ECP|A Chain A, Purine Nucleoside Phosphorylase
pdb|1ECP|B Chain B, Purine Nucleoside Phosphorylase
pdb|1ECP|C Chain C, Purine Nucleoside Phosphorylase
pdb|1ECP|D Chain D, Purine Nucleoside Phosphorylase
pdb|1ECP|E Chain E, Purine Nucleoside Phosphorylase
pdb|1ECP|F Chain F, Purine Nucleoside Phosphorylase
pdb|1A69|A Chain A, Purine Nucleoside Phosphorylase In Complex With Formycin B
And Sulphate (Phosphate)
pdb|1A69|C Chain C, Purine Nucleoside Phosphorylase In Complex With Formycin B
And Sulphate (Phosphate)
pdb|1A69|B Chain B, Purine Nucleoside Phosphorylase In Complex With Formycin B
And Sulphate (Phosphate)
Length = 238
Score = 23.1 bits (48), Expect = 5.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 18 YLSLGLSMVVAILMGVAIGYGLKKLT 43
Y LG+ M A + GVA +G K LT
Sbjct: 173 YGILGVEMEAAGIYGVAAEFGAKALT 198
>pdb|1K9S|A Chain A, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
pdb|1K9S|C Chain C, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
pdb|1K9S|B Chain B, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
pdb|1K9S|E Chain E, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
pdb|1K9S|D Chain D, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
pdb|1K9S|F Chain F, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
Length = 237
Score = 23.1 bits (48), Expect = 5.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 18 YLSLGLSMVVAILMGVAIGYGLKKLT 43
Y LG+ M A + GVA +G K LT
Sbjct: 173 YGILGVEMEAAGIYGVAAEFGAKALT 198
>pdb|1FE8|H Chain H, Crystal Structure Of The Von Willebrand Factor A3 Domain
In Complex With A Fab Fragment Of Igg Ru5 That Inhibits
Collagen Binding
pdb|1FE8|I Chain I, Crystal Structure Of The Von Willebrand Factor A3 Domain
In Complex With A Fab Fragment Of Igg Ru5 That Inhibits
Collagen Binding
pdb|1FE8|J Chain J, Crystal Structure Of The Von Willebrand Factor A3 Domain
In Complex With A Fab Fragment Of Igg Ru5 That Inhibits
Collagen Binding
Length = 210
Score = 22.7 bits (47), Expect = 7.1
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 48 LFWLGVIWG 56
L WLGVIWG
Sbjct: 45 LEWLGVIWG 53
>pdb|1LQT|A Chain A, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQT|B Chain B, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQU|A Chain A, Mycobacterium Tuberculosis Fpra In Complex With Nadph
pdb|1LQU|B Chain B, Mycobacterium Tuberculosis Fpra In Complex With Nadph
Length = 456
Score = 22.7 bits (47), Expect = 7.1
Identities = 11/41 (26%), Positives = 23/41 (55%), Gaps = 1/41 (2%)
Query: 45 ISWLFWLGVIWGVLASFLNV-YKAYKNMQKDYEELAKDPKY 84
+ L L WG++ S + + K++ K +E+ A+DP++
Sbjct: 36 VDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRF 76
>pdb|1HLM| Hemoglobin (Cyano-Met) (Sea Cucumber)
Length = 159
Score = 22.3 bits (46), Expect = 9.2
Identities = 13/42 (30%), Positives = 19/42 (44%), Gaps = 2/42 (4%)
Query: 17 NYLSLGLSMVVAILMGVAIGYGLKKLTHISWLFWLGVIWGVL 58
NY G ++ AI +G G K H +W ++ GVL
Sbjct: 114 NYDLFGKVLMEAIK--AELGVGFTKQVHDAWAKTFAIVQGVL 153
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.139 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 585,789
Number of Sequences: 13198
Number of extensions: 22227
Number of successful extensions: 48
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 7
length of query: 90
length of database: 2,899,336
effective HSP length: 66
effective length of query: 24
effective length of database: 2,028,268
effective search space: 48678432
effective search space used: 48678432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)